BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022898
         (243 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28722.3| unnamed protein product [Vitis vinifera]               77   2e-12
ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containi...    77   2e-12
ref|XP_002524751.1| pentatricopeptide repeat-containing protein,...    70   2e-10
ref|NP_171809.1| pentatricopeptide repeat-containing protein [Ar...    60   1e-07
ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07

>emb|CBI28722.3| unnamed protein product [Vitis vinifera]
          Length = 1361

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 40/74 (54%), Positives = 51/74 (68%)
 Frame = +2

Query: 2    FYNYLLTCHLNFGDLSSASQMVLEMLSKAKKARNYLASATLTLEAAGTSKFSSPTVNSRQ 181
            FYN LLTCHL FGDL SAS MVLEML KA++ARN L++ATL  EA G+   S+    S +
Sbjct: 901  FYNCLLTCHLKFGDLDSASHMVLEMLRKAREARNSLSAATLMFEAVGSGNTSTQEQVSEK 960

Query: 182  ARGLKKSDVLKQPK 223
            +   +KSD L+  +
Sbjct: 961  SLSHRKSDGLENAR 974


>ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
           mitochondrial-like [Vitis vinifera]
          Length = 784

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 40/74 (54%), Positives = 51/74 (68%)
 Frame = +2

Query: 2   FYNYLLTCHLNFGDLSSASQMVLEMLSKAKKARNYLASATLTLEAAGTSKFSSPTVNSRQ 181
           FYN LLTCHL FGDL SAS MVLEML KA++ARN L++ATL  EA G+   S+    S +
Sbjct: 324 FYNCLLTCHLKFGDLDSASHMVLEMLRKAREARNSLSAATLMFEAVGSGNTSTQEQVSEK 383

Query: 182 ARGLKKSDVLKQPK 223
           +   +KSD L+  +
Sbjct: 384 SLSHRKSDGLENAR 397


>ref|XP_002524751.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535935|gb|EEF37594.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 787

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 40/76 (52%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
 Frame = +2

Query: 2   FYNYLLTCHLNFGDLSSASQMVLEMLSKAKKARNYLASATLTLEAAGTS---KFSSPTVN 172
           FYN LL+CHL FGDL SAS MVL+ML KAK+ARN LA+A    +A   S   + S  +VN
Sbjct: 330 FYNCLLSCHLKFGDLDSASDMVLKMLWKAKEARNSLAAAKFVYQADSKSSHEQISPDSVN 389

Query: 173 SRQARGLKKSDVLKQP 220
            R+  GL KS   + P
Sbjct: 390 HREPDGLNKSRPNRTP 405


>ref|NP_171809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75200246|sp|Q9SA60.1|PPR6_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g03100, mitochondrial; Flags: Precursor
           gi|4587568|gb|AAD25799.1|AC006550_7 Contains PF|00637
           Clathrin 7-fold repeat. EST gb|AA721862 comes from this
           gene [Arabidopsis thaliana] gi|44917465|gb|AAS49057.1|
           At1g03100 [Arabidopsis thaliana]
           gi|332189408|gb|AEE27529.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 793

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 30/59 (50%), Positives = 38/59 (64%)
 Frame = +2

Query: 2   FYNYLLTCHLNFGDLSSASQMVLEMLSKAKKARNYLASATLTLEAAGTSKFSSPTVNSR 178
           FYN LL CHL FGDL SAS+MVLEML + K ARN L +A L  + A   +  +  V+ +
Sbjct: 333 FYNCLLMCHLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTADDGRLYTKRVSGK 391


>ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|222856234|gb|EEE93781.1|
           predicted protein [Populus trichocarpa]
          Length = 750

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 35/67 (52%), Positives = 42/67 (62%)
 Frame = +2

Query: 2   FYNYLLTCHLNFGDLSSASQMVLEMLSKAKKARNYLASATLTLEAAGTSKFSSPTVNSRQ 181
           FYN LLTCHL FGDL +AS MVL ML KA++ARN  A+A L        K SSP   S +
Sbjct: 293 FYNCLLTCHLKFGDLDAASNMVLIMLRKAREARNSFATAALLFP---IDKKSSPGPVSEE 349

Query: 182 ARGLKKS 202
           +   K+S
Sbjct: 350 SLSHKES 356