BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022894
         (214 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003619770.1| Pentatricopeptide repeat-containing protein ...    49   3e-08
ref|XP_003620177.1| Pentatricopeptide repeat-containing protein ...    44   3e-07
ref|XP_003594869.1| Pentatricopeptide repeat-containing protein ...    47   6e-07
ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containi...    44   6e-07
ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    45   1e-06

>ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355494785|gb|AES75988.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 582

 Score = 48.5 bits (114), Expect(2) = 3e-08
 Identities = 21/50 (42%), Positives = 33/50 (66%)
 Frame = +3

Query: 63  LLENGYPCDEVSYGTVMNGICKSVNSTAALQFMRAMEKKQFTPNVHIYTM 212
           ++  G+  D+VSYGT++NG+CK    TAALQ ++ ++ K   PN  +Y M
Sbjct: 166 VVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNM 215



 Score = 34.3 bits (77), Expect(2) = 3e-08
 Identities = 13/18 (72%), Positives = 17/18 (94%)
 Frame = +2

Query: 14  FAVFGSILKRGFEPNAVT 67
           F+VFG ILK+GF+PNA+T
Sbjct: 125 FSVFGKILKKGFDPNAIT 142


>ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355495192|gb|AES76395.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 612

 Score = 44.3 bits (103), Expect(2) = 3e-07
 Identities = 19/44 (43%), Positives = 31/44 (70%)
 Frame = +3

Query: 75  GYPCDEVSYGTVMNGICKSVNSTAALQFMRAMEKKQFTPNVHIY 206
           G+  ++V YGT++NG+CK   ++AALQ +R ++ K   PNV +Y
Sbjct: 156 GFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMY 199



 Score = 34.7 bits (78), Expect(2) = 3e-07
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +2

Query: 8   FGFAVFGSILKRGFEPNAVT 67
           F F+VF +ILK+G+EPNA+T
Sbjct: 109 FSFSVFANILKKGYEPNAIT 128


>ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355483917|gb|AES65120.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 545

 Score = 46.6 bits (109), Expect(2) = 6e-07
 Identities = 19/49 (38%), Positives = 34/49 (69%)
 Frame = +3

Query: 63  LLENGYPCDEVSYGTVMNGICKSVNSTAALQFMRAMEKKQFTPNVHIYT 209
           ++  G+  D+VSYGT++NG+C+   + AA+Q +R ++ K   PNV +Y+
Sbjct: 154 VVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYS 202



 Score = 31.6 bits (70), Expect(2) = 6e-07
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 2   VDFGFAVFGSILKRGFEPNAVT 67
           + F F+VF  ILK+G+ P+AVT
Sbjct: 109 IKFSFSVFAKILKKGYHPDAVT 130


>ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 43.5 bits (101), Expect(2) = 6e-07
 Identities = 17/49 (34%), Positives = 32/49 (65%)
 Frame = +3

Query: 63  LLENGYPCDEVSYGTVMNGICKSVNSTAALQFMRAMEKKQFTPNVHIYT 209
           ++  G+  D+VSYGT++NG+CK+  + A  + +R +E     P++ +YT
Sbjct: 157 VVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYT 205



 Score = 34.7 bits (78), Expect(2) = 6e-07
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +2

Query: 2   VDFGFAVFGSILKRGFEPNAVT 67
           + F F+VF +ILKRG+ PNA+T
Sbjct: 112 ITFAFSVFANILKRGYHPNAIT 133


>ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score = 45.1 bits (105), Expect(2) = 1e-06
 Identities = 19/48 (39%), Positives = 32/48 (66%)
 Frame = +3

Query: 63  LLENGYPCDEVSYGTVMNGICKSVNSTAALQFMRAMEKKQFTPNVHIY 206
           LL  G   D+VSYGT++NG+CK  ++  A++ +R ++ +   PNV +Y
Sbjct: 166 LLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMY 213



 Score = 32.3 bits (72), Expect(2) = 1e-06
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 2   VDFGFAVFGSILKRGFEPNAVT 67
           ++FGF+V   ILKRG++P+ +T
Sbjct: 121 INFGFSVLAKILKRGYQPHTIT 142