BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022793
         (548 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containi...    93   3e-17
ref|XP_002528404.1| pentatricopeptide repeat-containing protein,...    92   4e-17
ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containi...    92   5e-17
ref|XP_003595651.1| Pentatricopeptide repeat-containing protein ...    88   1e-15
ref|XP_002307852.1| predicted protein [Populus trichocarpa] gi|2...    86   3e-15

>ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
            chloroplastic-like [Vitis vinifera]
            gi|297745081|emb|CBI38673.3| unnamed protein product
            [Vitis vinifera]
          Length = 900

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 42/54 (77%), Positives = 50/54 (92%)
 Frame = -3

Query: 546  AGMVEEAVDVVKEMREKGIEPDHITYINLVHALQRNDNFLEAVKWSLWMKQMGM 385
            AGMVE+AV +VKEMRE GI+PD ITYINL++AL++ND FLEAVKWSLWMKQMG+
Sbjct: 847  AGMVEDAVVLVKEMRENGIQPDRITYINLINALRKNDEFLEAVKWSLWMKQMGL 900


>ref|XP_002528404.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223532192|gb|EEF33997.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 955

 Score = 92.4 bits (228), Expect = 4e-17
 Identities = 41/54 (75%), Positives = 49/54 (90%)
 Frame = -3

Query: 546  AGMVEEAVDVVKEMREKGIEPDHITYINLVHALQRNDNFLEAVKWSLWMKQMGM 385
            AGMVE+A+D+VKEMRE GIEPD ITY NL+ ALQ+ND +LEAVKWSLWMKQ+G+
Sbjct: 902  AGMVEDAIDLVKEMRENGIEPDKITYSNLITALQKNDKYLEAVKWSLWMKQLGL 955


>ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
           chloroplastic-like [Cucumis sativus]
          Length = 894

 Score = 92.0 bits (227), Expect = 5e-17
 Identities = 43/52 (82%), Positives = 46/52 (88%)
 Frame = -3

Query: 546 AGMVEEAVDVVKEMREKGIEPDHITYINLVHALQRNDNFLEAVKWSLWMKQM 391
           AGMVEEA  +VKEMREK IEPD ITYIN++ ALQRND FLEAVKWSLWMKQM
Sbjct: 841 AGMVEEAAQLVKEMREKRIEPDRITYINMIRALQRNDQFLEAVKWSLWMKQM 892


>ref|XP_003595651.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355484699|gb|AES65902.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 785

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 39/52 (75%), Positives = 47/52 (90%)
 Frame = -3

Query: 546 AGMVEEAVDVVKEMREKGIEPDHITYINLVHALQRNDNFLEAVKWSLWMKQM 391
           AGMVEEAV+++KEMR+ GIEPD  TY NL++AL+RND FLEAVKWSLWMKQ+
Sbjct: 732 AGMVEEAVELIKEMRKNGIEPDQTTYTNLINALKRNDKFLEAVKWSLWMKQI 783


>ref|XP_002307852.1| predicted protein [Populus trichocarpa] gi|222853828|gb|EEE91375.1|
           predicted protein [Populus trichocarpa]
          Length = 670

 Score = 86.3 bits (212), Expect = 3e-15
 Identities = 38/54 (70%), Positives = 46/54 (85%)
 Frame = -3

Query: 546 AGMVEEAVDVVKEMREKGIEPDHITYINLVHALQRNDNFLEAVKWSLWMKQMGM 385
           AGMVE+AV +VKEMR+ G+EPD ITY NL+  LQ+ND +LEAVKWSLWMKQ G+
Sbjct: 617 AGMVEDAVGLVKEMRQNGVEPDKITYTNLITTLQKNDKYLEAVKWSLWMKQRGL 670