BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022750
         (482 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    80   2e-13
ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula] g...    67   2e-09
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    66   3e-09
ref|XP_002524702.1| nuclease, putative [Ricinus communis] gi|223...    65   7e-09
ref|XP_002304990.1| predicted protein [Populus trichocarpa] gi|2...    64   2e-08

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 49/131 (37%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
 Frame = +2

Query: 2   GNPGRSGWGFVFRNYKGEFLGAAAGGMGTSTNYMAETMAIVQAIKQALELGWRYIWVECD 181
           G P     G VFRN++   LG  A  +G +T + AE  A + AI++++E   R IW+E D
Sbjct: 21  GAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIEYNLRDIWLETD 80

Query: 182 SSSVVQAFQNNK-MHWRVKEICKSLMGQAKWINV--TPSWRETNLGADSCAKQGAALSQG 352
           S  VV+AF +++ + W+++    + +  A+ I    T   RE N GADS AK G +L+  
Sbjct: 81  SKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGNAGADSLAKNGKSLALL 140

Query: 353 DSIWWESRPSF 385
            S WW S P F
Sbjct: 141 TSQWWSSSPLF 151


>ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula]
           gi|355506707|gb|AES87849.1| GDSL esterase/lipase
           [Medicago truncatula]
          Length = 1004

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
 Frame = +2

Query: 17  SGWGFVFRNYKGEFLGAAAGGMGTSTNYMAETMAIVQAIKQALELGWRYIWVECDSSSVV 196
           S  G VFR+    FL   A  +G  + Y  E  AI++ ++ A +  WR IW+E DS+ VV
Sbjct: 246 SSCGGVFRDQNANFLSCFAKNLGGGSAYQPELAAIMRVVEIAYQRNWRNIWIESDSALVV 305

Query: 197 QAFQNNKM---HWRVKEI-CKSLMGQAKWINVTPSWRETNLGADSCAKQGAALSQGDSIW 364
            AF+   M     R + I C+ L+ +  ++ +T  +RE N  AD  A +G  + +G +IW
Sbjct: 306 MAFKKMSMIPCRLRNRWINCRKLLCRMNFV-ITHIYREDNRCADKLASKGLDI-EGVTIW 363

Query: 365 WESRPSFMKNLENH 406
             + P F+ N   H
Sbjct: 364 L-NMPDFINNFVIH 376


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
 Frame = +2

Query: 11   GRSGWGFVFRNYKGEFLGAAAGGMGTSTNYMAETMAIVQAIKQALELGWRYIWVECDSSS 190
            G +  G +FR+  G FLGA +  +G ++ + AET+A + A++ A   GWR +W+E DS+S
Sbjct: 1034 GLAACGGLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTS 1093

Query: 191  VVQAFQNNKM-HWRVKEICKSLMGQAKWINVTPSWRETNLGADSCAKQGAALSQGDSIWW 367
             +  F N+ +  W ++    +       +  +    E N  AD+ A  G  + QG SIW 
Sbjct: 1094 ALMIFSNSSLVQWLLRNRWHNAQRLGIQVISSHILHEGNRCADNLANMGHGI-QG-SIWL 1151

Query: 368  ESRPS 382
            E+ P+
Sbjct: 1152 ETLPT 1156


>ref|XP_002524702.1| nuclease, putative [Ricinus communis] gi|223536063|gb|EEF37721.1|
           nuclease, putative [Ricinus communis]
          Length = 201

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
 Frame = +2

Query: 2   GNPGRSGWGFVFRNYKGEFLGAAAGGMGTSTNYMAETMAIVQAIKQALELGWRYIWVECD 181
           G  G+   G VFRN+K EFL   A  +G ST+ +AE  A+ + ++  LE GW  +W+E D
Sbjct: 52  GREGKGSIGGVFRNHKAEFLLGYAESIGRSTSTIAELAALRRGLELVLENGWSNVWLEGD 111

Query: 182 SSSVVQAFQNNKMHWRVKEICKSLMGQAKWIN----------VTPSWRETNLGADSCAKQ 331
           + ++++         R K  C  +      IN          V+  +RE N  AD  A+ 
Sbjct: 112 AKTLLEIIVK-----RRKVRCAQMQRHVSDINLIIPELDNCIVSHVYREGNRAADKLAQI 166

Query: 332 GAALSQGDSIWWESRP 379
           G  L Q   IWW   P
Sbjct: 167 GHQL-QKPKIWWHIPP 181


>ref|XP_002304990.1| predicted protein [Populus trichocarpa] gi|222847954|gb|EEE85501.1|
           predicted protein [Populus trichocarpa]
          Length = 202

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 45/131 (34%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
 Frame = +2

Query: 2   GNPGRSGWGFVFRNYKGEFLGAAAGGMGTSTNYMAETMAIVQAIKQALELGWRYIWVECD 181
           G  G++  G VFRN++ EFL   A  +G +T+ +AE  A+ + ++  LE GW  +W+E D
Sbjct: 53  GTAGKASIGGVFRNHEAEFLLGYAEPIGGTTSTIAELAALRRGLELVLENGWSNVWLEGD 112

Query: 182 SSSVVQAFQNNKMHWRVKEICKSLMGQAKWIN----------VTPSWRETNLGADSCAKQ 331
           S S+V      K     +  CK    Q   IN          VT  +RE N  AD  A+ 
Sbjct: 113 SKSLVDIIVKRK-----QVRCKEAQRQVSHINLIMPELQNCVVTHVFREGNRAADKLARI 167

Query: 332 GAALSQGDSIW 364
           G  L Q   IW
Sbjct: 168 GHQL-QKPKIW 177