BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022716
         (1106 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266159.1| PREDICTED: phytochrome A-associated F-box pr...   406   e-111
emb|CAN81258.1| hypothetical protein VITISV_000965 [Vitis vinifera]   406   e-111
ref|XP_004173063.1| PREDICTED: phytochrome A-associated F-box pr...   389   e-106
ref|XP_002320346.1| f-box family protein [Populus trichocarpa] g...   388   e-105
ref|XP_002523077.1| Phytochrome A-associated F-box protein, puta...   379   e-103

>ref|XP_002266159.1| PREDICTED: phytochrome A-associated F-box protein-like [Vitis
            vinifera]
          Length = 330

 Score =  406 bits (1043), Expect = e-111
 Identities = 199/339 (58%), Positives = 242/339 (71%), Gaps = 4/339 (1%)
 Frame = -3

Query: 1017 TMSSTALIFTLTDDIILNILFNLEDDPKSWSSLACVCTKFSYXXXXXXXXXXXXXXIPXX 838
            TM +  +   L+DD++L+ILF LEDDP+ W+ LACVCTKFS               IP  
Sbjct: 2    TMGNETVFSKLSDDVVLSILFKLEDDPRYWARLACVCTKFSSLIRNVCWKTKCSQTIPSI 61

Query: 837  XXXXXXXXXXLEPPGGWVSLFKLSVCCPGLHHAGVLLENSDFGLERDLGPDENFQQSEQV 658
                        PPGGW +L KLSVCCPGL H+GVLLENSDFGLER+LGPDE+++++   
Sbjct: 62   VADLFSGPGDSSPPGGWAALHKLSVCCPGLLHSGVLLENSDFGLERELGPDEDYRKAGSF 121

Query: 657  DLSHFDQ----VPSTSHQECNLVXXXXXXXXXXTWSLYDDLYFDTVYDVSEMKEEVVQPV 490
             ++  D     V S+SH + N            +WSL+DDLYFDT+Y+VSE  +E     
Sbjct: 122  QITVGDATTPAVASSSHHDGN-----SEVSDSCSWSLFDDLYFDTLYNVSETMDETQ--- 173

Query: 489  LGDEELSGVVVKVGDFSISNKKRKKCTRSIQTHLATGVWNLNREPGNKLLASRFRGDCLY 310
            +G E  +G V   GD  +S  K  K  R +++HLA+GVWNL+RE GNKLLASRFRGDCLY
Sbjct: 174  IGVEVENGAVKVGGDLPVS--KTVKSCRPLRSHLASGVWNLSREQGNKLLASRFRGDCLY 231

Query: 309  ICDWPGCVHTEEKRSYKLFRGVFKNFKKSQVWRTINDGNRSKISLDCAFCNCKETWDLHS 130
            ICDWPGCVH EEKR+Y LFRGVFKNFK+S+VWRTINDGNRSK+ L+CAFC CKETWDLHS
Sbjct: 232  ICDWPGCVHVEEKRNYMLFRGVFKNFKRSRVWRTINDGNRSKVDLNCAFCPCKETWDLHS 291

Query: 129  AFCLKRVFGFHDDGEPVVRAYVCENGHVSGAWTDRPMYS 13
            AFCL+R FG+HDDGEPVVRAYVCENGHVSGAWT+ P+Y+
Sbjct: 292  AFCLRRGFGYHDDGEPVVRAYVCENGHVSGAWTEYPLYT 330


>emb|CAN81258.1| hypothetical protein VITISV_000965 [Vitis vinifera]
          Length = 720

 Score =  406 bits (1043), Expect = e-111
 Identities = 198/339 (58%), Positives = 241/339 (71%), Gaps = 4/339 (1%)
 Frame = -3

Query: 1017 TMSSTALIFTLTDDIILNILFNLEDDPKSWSSLACVCTKFSYXXXXXXXXXXXXXXIPXX 838
            TM +  +   L+DD++L+ILF LEDDP+ W+ LACVCTKFS                P  
Sbjct: 392  TMGNETVFSKLSDDVVLSILFKLEDDPRYWARLACVCTKFSSLIRNVCWKTKCSQTXPSI 451

Query: 837  XXXXXXXXXXLEPPGGWVSLFKLSVCCPGLHHAGVLLENSDFGLERDLGPDENFQQSEQV 658
                        PPGGW +L KLSVCCPGL H+GVLLENSDFGLER+LGPDE+++++   
Sbjct: 452  VADLFSGPGDSSPPGGWAALHKLSVCCPGLLHSGVLLENSDFGLERELGPDEDYRKAGSF 511

Query: 657  DLSHFDQ----VPSTSHQECNLVXXXXXXXXXXTWSLYDDLYFDTVYDVSEMKEEVVQPV 490
             ++  D     V S+SH + N            +WSL+DDLYFDT+Y+VSE  +E     
Sbjct: 512  QITVGDATTPAVASSSHHDGN-----SEVSDSCSWSLFDDLYFDTLYNVSETMDETQ--- 563

Query: 489  LGDEELSGVVVKVGDFSISNKKRKKCTRSIQTHLATGVWNLNREPGNKLLASRFRGDCLY 310
            +G E  +G V   GD  +S  K  K  R +++HLA+GVWNL+RE GNKLLASRFRGDCLY
Sbjct: 564  IGVEVENGAVKVGGDLPVS--KTVKSCRPLRSHLASGVWNLSREQGNKLLASRFRGDCLY 621

Query: 309  ICDWPGCVHTEEKRSYKLFRGVFKNFKKSQVWRTINDGNRSKISLDCAFCNCKETWDLHS 130
            ICDWPGCVH EEKR+Y LFRGVFKNFK+S+VWRTINDGNRSK+ L+CAFC CKETWDLHS
Sbjct: 622  ICDWPGCVHVEEKRNYMLFRGVFKNFKRSRVWRTINDGNRSKVDLNCAFCPCKETWDLHS 681

Query: 129  AFCLKRVFGFHDDGEPVVRAYVCENGHVSGAWTDRPMYS 13
            AFCL+R FG+HDDGEPVVRAYVCENGHVSGAWT+ P+Y+
Sbjct: 682  AFCLRRGFGYHDDGEPVVRAYVCENGHVSGAWTEYPLYT 720


>ref|XP_004173063.1| PREDICTED: phytochrome A-associated F-box protein-like [Cucumis
            sativus]
          Length = 379

 Score =  389 bits (999), Expect = e-106
 Identities = 201/360 (55%), Positives = 244/360 (67%), Gaps = 9/360 (2%)
 Frame = -3

Query: 1065 SICLSSSFLHSFLPQQTM---SSTALIFTLTDDIILNILFNLEDDPKSWSSLACVCTKFS 895
            S+  SSS     LP  T     + +L  TL DDI+LNI F LEDDP++W+ LACV TKFS
Sbjct: 25   SLSSSSSSSSLSLPFSTPLFPMADSLFSTLPDDILLNIFFKLEDDPRNWARLACVSTKFS 84

Query: 894  YXXXXXXXXXXXXXXIPXXXXXXXXXXXXLEPPGGWVSLFKLSVCCPGLHHAGVLLENSD 715
                           IP              P GGW SL KL+VCCPGL H+GVLLENSD
Sbjct: 85   CTIRNICWKTKCSNAIPSLVSDLLVGDSI--PAGGWASLHKLAVCCPGLVHSGVLLENSD 142

Query: 714  FGLERDLGPDENFQQSEQVDLSHFDQVPSTS-----HQECNLVXXXXXXXXXXTWSLYDD 550
            FGLER+LGPDEN+ +      S  +  PS++     + + +             WSLYDD
Sbjct: 143  FGLERELGPDENYMKLGSSQYSQPESNPSSTALFEVNSDLSASASASASASDCAWSLYDD 202

Query: 549  LYFDTVYDVSEMKEEVVQPVLGDEELS-GVVVKVGDFSISNKKRKKCTRSIQTHLATGVW 373
            LY DT+Y+ SE  + V+ P +G  ++  GV +   +F +S  KR+K  RS+++HLA+GVW
Sbjct: 203  LYLDTMYNDSEAPD-VLDPQIGSTKVEKGVFMTDREFCVS--KRRKICRSMRSHLASGVW 259

Query: 372  NLNREPGNKLLASRFRGDCLYICDWPGCVHTEEKRSYKLFRGVFKNFKKSQVWRTINDGN 193
            NL+RE GNKLL SRFRGD LYICDWPGCVH EEKR+Y LFRG+FKNFK S VWRTI DGN
Sbjct: 260  NLSREQGNKLLRSRFRGDSLYICDWPGCVHIEEKRNYMLFRGIFKNFKGSHVWRTIKDGN 319

Query: 192  RSKISLDCAFCNCKETWDLHSAFCLKRVFGFHDDGEPVVRAYVCENGHVSGAWTDRPMYS 13
            R+KI L+CAFC+CKETWDLHSAFCL+RVFG+HDDGEPVVRAYVCENGHVSGAWTD P+Y+
Sbjct: 320  RNKIDLNCAFCSCKETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT 379


>ref|XP_002320346.1| f-box family protein [Populus trichocarpa]
            gi|222861119|gb|EEE98661.1| f-box family protein [Populus
            trichocarpa]
          Length = 334

 Score =  388 bits (997), Expect = e-105
 Identities = 197/343 (57%), Positives = 240/343 (69%), Gaps = 9/343 (2%)
 Frame = -3

Query: 1014 MSSTALIFTLTDDIILNILFNLEDDPKSWSSLACVCTKFSYXXXXXXXXXXXXXXIPXXX 835
            M+ T     L++D++LNIL  LEDDP++W+ LACVC++FS               IP   
Sbjct: 1    MTVTTDFSRLSEDVVLNILSKLEDDPRNWARLACVCSRFSSLVRDICWRSKCNKTIPSVV 60

Query: 834  XXXXXXXXXLEPPGGWVSLFKLSVCCPGLHHAGVLLENSDFGLERDLGPDENFQQSEQVD 655
                       P GGW +L+KL+VCCPGL HAGVLLE SDFGLER+LGPD+ F++S+   
Sbjct: 61   ADLLPSPDSSFP-GGWSALYKLAVCCPGLLHAGVLLELSDFGLERELGPDDYFRKSKTTP 119

Query: 654  LSHFDQVPSTSHQECNLVXXXXXXXXXXTWSLYDDLYFDTVYDVSEMKEEVVQPVLGDEE 475
                   P  +   C+ +           WSL+DDLY+DTVY+VSE ++       G+E+
Sbjct: 120  --PIPHQPQQASDSCSNLENCDSS-----WSLFDDLYYDTVYNVSESQDGPAASCEGNED 172

Query: 474  LSG--------VVVKVG-DFSISNKKRKKCTRSIQTHLATGVWNLNREPGNKLLASRFRG 322
            + G        VV K G DFS+S K+RK C RS ++HLA+GVWNL RE GNKLLASRFRG
Sbjct: 173  VIGDNDDKSVDVVDKAGVDFSVS-KRRKVCCRSSRSHLASGVWNLCREQGNKLLASRFRG 231

Query: 321  DCLYICDWPGCVHTEEKRSYKLFRGVFKNFKKSQVWRTINDGNRSKISLDCAFCNCKETW 142
            DCLYICDWPGCVHTEEKRSY LFRG+FKNFKKS+VWRT++DGNRSK  L+CAFC CKETW
Sbjct: 232  DCLYICDWPGCVHTEEKRSYMLFRGIFKNFKKSRVWRTVHDGNRSKTDLNCAFCECKETW 291

Query: 141  DLHSAFCLKRVFGFHDDGEPVVRAYVCENGHVSGAWTDRPMYS 13
            DL+SAFCLKR  G+HDDGEPVVRAYVCENGHVSGAWTD P+Y+
Sbjct: 292  DLNSAFCLKRGCGYHDDGEPVVRAYVCENGHVSGAWTDWPLYT 334


>ref|XP_002523077.1| Phytochrome A-associated F-box protein, putative [Ricinus communis]
            gi|223537639|gb|EEF39262.1| Phytochrome A-associated
            F-box protein, putative [Ricinus communis]
          Length = 332

 Score =  379 bits (974), Expect = e-103
 Identities = 192/344 (55%), Positives = 235/344 (68%), Gaps = 10/344 (2%)
 Frame = -3

Query: 1014 MSSTALIFTLTDDIILNILFNLEDDPKSWSSLACVCTKFSYXXXXXXXXXXXXXXIPXXX 835
            M  +++   L DDI+L I F LEDDP++W+ LACVCTKF+               IP   
Sbjct: 1    MVDSSIFSKLADDIVLTIFFKLEDDPRNWARLACVCTKFTSLIRNICFKAKCHRTIPSVV 60

Query: 834  XXXXXXXXXLEPPGGWVSLFKLSVCCPGLHHAGVLLENSDFGLERDLGPDENFQQSEQVD 655
                       P GGW SL KLSVCCPGL HAG LLE+SDFGLER+LGPD+N+ ++  V 
Sbjct: 61   SDLLASSDGAIP-GGWSSLHKLSVCCPGLLHAGFLLEHSDFGLERELGPDDNYHKTS-VS 118

Query: 654  LSHFDQVPSTS----HQECNLVXXXXXXXXXXTWSLYDDLYFDTVYDVSEMKEEVVQPVL 487
             +   Q P         +C+             WSL+DDLY+DT+YDVSE ++     V 
Sbjct: 119  RTTSSQPPPPPPPGPSSDCSNTNNNTQNNDCS-WSLFDDLYYDTIYDVSESED-----VN 172

Query: 486  GDEELSGV------VVKVGDFSISNKKRKKCTRSIQTHLATGVWNLNREPGNKLLASRFR 325
            G  ++  +      V+K G       KR+K +RS+++HLA+GVWNL+RE GNKLLASRFR
Sbjct: 173  GSADVVSINRDDKTVLKGGGVC----KRRKISRSLRSHLASGVWNLSREQGNKLLASRFR 228

Query: 324  GDCLYICDWPGCVHTEEKRSYKLFRGVFKNFKKSQVWRTINDGNRSKISLDCAFCNCKET 145
            GD LYICDWPGCVH EEKR+Y LFRG+FKNFK+S+VWRTINDGNR KI L+CAFC CKET
Sbjct: 229  GDSLYICDWPGCVHMEEKRNYMLFRGIFKNFKRSRVWRTINDGNRRKIDLNCAFCGCKET 288

Query: 144  WDLHSAFCLKRVFGFHDDGEPVVRAYVCENGHVSGAWTDRPMYS 13
            WDLHSAFCL+RVFG+HDDGEP+VRAYVCENGHVSGAWTD P+Y+
Sbjct: 289  WDLHSAFCLRRVFGYHDDGEPIVRAYVCENGHVSGAWTDVPLYT 332