BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022708
         (1137 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522236.1| pentatricopeptide repeat-containing protein,...   363   3e-98
ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containi...   355   1e-95
ref|XP_003629790.1| Pentatricopeptide repeat-containing protein ...   354   2e-95
ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containi...   352   1e-94
ref|XP_003608008.1| Pentatricopeptide repeat-containing protein ...   350   5e-94

>ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223538489|gb|EEF40094.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 640

 Score =  363 bits (933), Expect = 3e-98
 Identities = 183/330 (55%), Positives = 241/330 (73%)
 Frame = +2

Query: 146  NKEICRLCELGNLQKAVFTLSNTCTSEIEVSTYCSLLQLCAEQKSLQHGKKVHSVINSSC 325
            N++IC LCE+G+L+ A+  L     S I+ +TYCS+LQLCAE  SLQ GKKVHS I+SS 
Sbjct: 70   NRKICELCEVGSLKNAIELLDMYPKSNIDSNTYCSILQLCAELNSLQEGKKVHSFISSSG 129

Query: 326  NVVVLDSVLGSKLVFMYLNCGDLREGRRVFNRIKKEKVFLWNFIISEYAKIGDYKESVLL 505
              + +D +LG+KLVFMY+NCGD+REGR +F++I  EKVFLWN ++S YAKIG ++ESV L
Sbjct: 130  --IFVDGLLGTKLVFMYVNCGDIREGRVIFDKIANEKVFLWNLMLSGYAKIGAFEESVYL 187

Query: 506  FREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVGNALIAFYSK 685
            FR+M  LG++ N +T SC+LKCF  LGS  EGE  HGY+L+LG+G  N V N+LI+FY K
Sbjct: 188  FRKMLDLGIQVNSHTVSCILKCFAALGSVKEGEWVHGYLLKLGFGSYNTVVNSLISFYFK 247

Query: 686  CKKMEKARRVFDELSDRDVISWNSIISGYSSNGLSEKALQIFSMMRFSGFEVDVVTMVSV 865
             +K+E A  VFDEL +RD++SWNS+ISG  +N L EK +Q+F  M + G   D+VT+V+V
Sbjct: 248  TRKIEAAYEVFDELKNRDIVSWNSMISGTVANDLPEKGIQVFKEMLYLGVSFDLVTLVNV 307

Query: 866  LPACAERGSLLLGKALHGHVIKAESFDGEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRS 1045
            L ACA  G+  LG+ LH   IKA+  D  +   NTL+DMY+K GDLN+A+RVF K+  RS
Sbjct: 308  LAACANSGNFPLGRVLHAFAIKAQ-LDQRMTFVNTLLDMYSKCGDLNNAIRVFQKMGERS 366

Query: 1046 VVSWTSMLAGYARLGEYDRAIELFWEMQAE 1135
            VVSWTS++AGYAR G     I LF EM+ E
Sbjct: 367  VVSWTSLIAGYAREGLSGEGIRLFHEMERE 396



 Score =  159 bits (403), Expect = 9e-37
 Identities = 96/288 (33%), Positives = 148/288 (51%), Gaps = 6/288 (2%)
 Frame = +2

Query: 230  EVSTYCSLLQLCAEQKSLQHGKKVHSVINSSCNVVVLDSVLGSKLVF------MYLNCGD 391
            ++ T  ++L  CA   +   G+ +H+          + + L  ++ F      MY  CGD
Sbjct: 300  DLVTLVNVLAACANSGNFPLGRVLHAF--------AIKAQLDQRMTFVNTLLDMYSKCGD 351

Query: 392  LREGRRVFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFREMRKLGVEGNYYTFSCVLKC 571
            L    RVF ++ +  V  W  +I+ YA+ G   E + LF EM + GV  + +T + VL  
Sbjct: 352  LNNAIRVFQKMGERSVVSWTSLIAGYAREGLSGEGIRLFHEMEREGVRPDNFTVTAVLHA 411

Query: 572  FGGLGSFVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCKKMEKARRVFDELSDRDVISW 751
                GS   G++ H YV          V N+L+  Y+KC  ME A  VF E+ ++D++SW
Sbjct: 412  CACSGSLEIGKDVHDYVKENNMQKDRIVCNSLMDMYAKCGSMEDANLVFLEMPNKDIVSW 471

Query: 752  NSIISGYSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLPACAERGSLLLGKALHGHVIK 931
            N++I GYS NG   + L +F  M     + D  TM  +LPACA   +L  G+ +HG++ +
Sbjct: 472  NTMIGGYSKNGRPNETLHLFVAM-VQELKPDGRTMACILPACASLAALDRGREIHGYIQR 530

Query: 932  AESFDGEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAG 1075
               FD ++ V N L+DMY K G L  A   F  I  + ++SWT M+AG
Sbjct: 531  NGCFD-DLHVANALIDMYAKCGALALARLFFDMIPVKDLISWTVMIAG 577



 Score =  157 bits (397), Expect = 5e-36
 Identities = 100/328 (30%), Positives = 164/328 (50%), Gaps = 6/328 (1%)
 Frame = +2

Query: 170  ELGNLQKAVFTLSNTCTSEIEVS--TYCSLLQLCAEQKSLQHGKKVHSVINS----SCNV 331
            ++G  +++V+         I+V+  T   +L+  A   S++ G+ VH  +      S N 
Sbjct: 177  KIGAFEESVYLFRKMLDLGIQVNSHTVSCILKCFAALGSVKEGEWVHGYLLKLGFGSYNT 236

Query: 332  VVLDSVLGSKLVFMYLNCGDLREGRRVFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFR 511
            VV      + L+  Y     +     VF+ +K   +  WN +IS        ++ + +F+
Sbjct: 237  VV------NSLISFYFKTRKIEAAYEVFDELKNRDIVSWNSMISGTVANDLPEKGIQVFK 290

Query: 512  EMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCK 691
            EM  LGV  +  T   VL      G+F  G   H + ++          N L+  YSKC 
Sbjct: 291  EMLYLGVSFDLVTLVNVLAACANSGNFPLGRVLHAFAIKAQLDQRMTFVNTLLDMYSKCG 350

Query: 692  KMEKARRVFDELSDRDVISWNSIISGYSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLP 871
             +  A RVF ++ +R V+SW S+I+GY+  GLS + +++F  M   G   D  T+ +VL 
Sbjct: 351  DLNNAIRVFQKMGERSVVSWTSLIAGYAREGLSGEGIRLFHEMEREGVRPDNFTVTAVLH 410

Query: 872  ACAERGSLLLGKALHGHVIKAESFDGEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVV 1051
            ACA  GSL +GK +H +V K  +   + IV N+L+DMY K G +  A  VF ++ N+ +V
Sbjct: 411  ACACSGSLEIGKDVHDYV-KENNMQKDRIVCNSLMDMYAKCGSMEDANLVFLEMPNKDIV 469

Query: 1052 SWTSMLAGYARLGEYDRAIELFWEMQAE 1135
            SW +M+ GY++ G  +  + LF  M  E
Sbjct: 470  SWNTMIGGYSKNGRPNETLHLFVAMVQE 497


>ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 785

 Score =  355 bits (911), Expect = 1e-95
 Identities = 178/330 (53%), Positives = 244/330 (73%)
 Frame = +2

Query: 146  NKEICRLCELGNLQKAVFTLSNTCTSEIEVSTYCSLLQLCAEQKSLQHGKKVHSVINSSC 325
            N +IC+ CE+G+L+ A+  LS +  SE+E++TYCS+LQLCAE KSL+ GK+VHS+I+S  
Sbjct: 28   NAKICKFCEMGDLRNAMKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHSIISS-- 85

Query: 326  NVVVLDSVLGSKLVFMYLNCGDLREGRRVFNRIKKEKVFLWNFIISEYAKIGDYKESVLL 505
            N + +D VLG+KLVFMY+NCGDL +GRR+F+ I  +K+FLWN ++SEYAKIG+Y+ESV L
Sbjct: 86   NGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGL 145

Query: 506  FREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVGNALIAFYSK 685
            F +M++LG+ G+ YTF+CVLK F       E +  HGYVL+LG+G  N V N+LIA Y K
Sbjct: 146  FEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFK 205

Query: 686  CKKMEKARRVFDELSDRDVISWNSIISGYSSNGLSEKALQIFSMMRFSGFEVDVVTMVSV 865
            C ++E AR +FDELSDRDV+SWNS+ISG + NG S   L+ F  M   G +VD  T+V+V
Sbjct: 206  CGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNV 265

Query: 866  LPACAERGSLLLGKALHGHVIKAESFDGEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRS 1045
            L ACA  G+L LG+ALH + +KA  F G ++ NNTL+DMY+K G+LN A  VF K+   +
Sbjct: 266  LVACANVGNLTLGRALHAYGVKA-GFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETT 324

Query: 1046 VVSWTSMLAGYARLGEYDRAIELFWEMQAE 1135
            +VSWTS++A + R G +  AI LF EMQ++
Sbjct: 325  IVSWTSIIAAHVREGLHYEAIGLFDEMQSK 354



 Score =  167 bits (423), Expect = 4e-39
 Identities = 98/303 (32%), Positives = 166/303 (54%), Gaps = 1/303 (0%)
 Frame = +2

Query: 224  EIEVSTYCSLLQLCAEQKSLQHGKKVHSV-INSSCNVVVLDSVLGSKLVFMYLNCGDLRE 400
            +++ +T  ++L  CA   +L  G+ +H+  + +  +  V+     + L+ MY  CG+L  
Sbjct: 256  DVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVM---FNNTLLDMYSKCGNLNG 312

Query: 401  GRRVFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGG 580
               VF ++ +  +  W  II+ + + G + E++ LF EM+  G+  + Y  + V+     
Sbjct: 313  ANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACAC 372

Query: 581  LGSFVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCKKMEKARRVFDELSDRDVISWNSI 760
              S  +G E H ++ +   G +  V NAL+  Y+KC  ME+A  +F +L  ++++SWN++
Sbjct: 373  SNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTM 432

Query: 761  ISGYSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLPACAERGSLLLGKALHGHVIKAES 940
            I GYS N L  +ALQ+F  M+    + D VTM  VLPACA   +L  G+ +HGH+++   
Sbjct: 433  IGGYSQNSLPNEALQLFLDMQ-KQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGY 491

Query: 941  FDGEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFW 1120
            F  ++ V   LVDMY K G L  A ++F  I  + ++ WT M+AGY   G    AI  F 
Sbjct: 492  FS-DLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFE 550

Query: 1121 EMQ 1129
            +M+
Sbjct: 551  KMR 553



 Score =  152 bits (384), Expect = 1e-34
 Identities = 88/303 (29%), Positives = 152/303 (50%), Gaps = 4/303 (1%)
 Frame = +2

Query: 239  TYCSLLQLCAEQKSLQHGKKVHSVINS----SCNVVVLDSVLGSKLVFMYLNCGDLREGR 406
            T+  +L+  A    ++  K+VH  +      S N VV      + L+  Y  CG++   R
Sbjct: 160  TFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVV------NSLIAAYFKCGEVESAR 213

Query: 407  RVFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLG 586
             +F+ +    V  WN +IS     G  +  +  F +M  LGV+ +  T   VL     +G
Sbjct: 214  ILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVG 273

Query: 587  SFVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCKKMEKARRVFDELSDRDVISWNSIIS 766
            +   G   H Y ++ G+       N L+  YSKC  +  A  VF ++ +  ++SW SII+
Sbjct: 274  NLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIA 333

Query: 767  GYSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLPACAERGSLLLGKALHGHVIKAESFD 946
             +   GL  +A+ +F  M+  G   D+  + SV+ ACA   SL  G+ +H H IK  +  
Sbjct: 334  AHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNH-IKKNNMG 392

Query: 947  GEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEM 1126
              + V+N L++MY K G +  A  +F ++  +++VSW +M+ GY++    + A++LF +M
Sbjct: 393  SNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDM 452

Query: 1127 QAE 1135
            Q +
Sbjct: 453  QKQ 455



 Score =  132 bits (331), Expect = 2e-28
 Identities = 78/283 (27%), Positives = 146/283 (51%), Gaps = 1/283 (0%)
 Frame = +2

Query: 230  EVSTYCSLLQLCAEQKSLQHGKKVHSVINSSCNVVVLDSVLGSKLVFMYLNCGDLREGRR 409
            ++    S++  CA   SL  G++VH+ I    N +  +  + + L+ MY  CG + E   
Sbjct: 359  DIYAVTSVVHACACSNSLDKGREVHNHIKK--NNMGSNLPVSNALMNMYAKCGSMEEANL 416

Query: 410  VFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGS 589
            +F+++  + +  WN +I  Y++     E++ LF +M+K  ++ +  T +CVL    GL +
Sbjct: 417  IFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAA 475

Query: 590  FVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCKKMEKARRVFDELSDRDVISWNSIISG 769
              +G E HG++LR GY     V  AL+  Y KC  +  A+++FD +  +D+I W  +I+G
Sbjct: 476  LEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAG 535

Query: 770  YSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLPACAERGSLLLGKALHGHVIKAESFDG 949
            Y  +G  ++A+  F  MR +G E +  +  S+L AC   G L  G  L   +    + + 
Sbjct: 536  YGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEP 595

Query: 950  EIIVNNTLVDMYTKRGDLNSAMRVFGKIDNR-SVVSWTSMLAG 1075
            ++     +VD+  + G+L+ A +    +  +     W ++L+G
Sbjct: 596  KLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSG 638


>ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355523812|gb|AET04266.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  354 bits (909), Expect = 2e-95
 Identities = 181/340 (53%), Positives = 248/340 (72%), Gaps = 1/340 (0%)
 Frame = +2

Query: 119  NTIHPKT-GPNKEICRLCELGNLQKAVFTLSNTCTSEIEVSTYCSLLQLCAEQKSLQHGK 295
            NT H  T   N +I + CE+G+L+ A+  L+ + + E+ +++YCS+LQLCAE+KSL+ GK
Sbjct: 55   NTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGK 114

Query: 296  KVHSVINSSCNVVVLDSVLGSKLVFMYLNCGDLREGRRVFNRIKKEKVFLWNFIISEYAK 475
            +VHSVI S  N + +D  LG+KLVFMY+NCGDL +GR++F++I  +KVFLWN ++SEYAK
Sbjct: 115  RVHSVIIS--NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAK 172

Query: 476  IGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRV 655
            IG+++ESV LF++M+KLGV GN YTF+CVLKCF  LG   E +  HGYVL+LG+G +  V
Sbjct: 173  IGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAV 232

Query: 656  GNALIAFYSKCKKMEKARRVFDELSDRDVISWNSIISGYSSNGLSEKALQIFSMMRFSGF 835
             N+LIA Y K   +E A  +FDELS+ DV+SWNS+I+G   NG S   L+IF  M   G 
Sbjct: 233  VNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV 292

Query: 836  EVDVVTMVSVLPACAERGSLLLGKALHGHVIKAESFDGEIIVNNTLVDMYTKRGDLNSAM 1015
            EVD+ T+VSVL ACA  G+L LG+ALHG  +KA  F  E++ +NTL+DMY+K G+LN A 
Sbjct: 293  EVDLTTLVSVLVACANIGNLSLGRALHGFGVKA-CFSEEVVFSNTLLDMYSKCGNLNGAT 351

Query: 1016 RVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQAE 1135
             VF K+ + ++VSWTS++A Y R G Y  AI LF EMQ++
Sbjct: 352  EVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSK 391



 Score =  188 bits (478), Expect = 2e-45
 Identities = 108/302 (35%), Positives = 170/302 (56%)
 Frame = +2

Query: 224  EIEVSTYCSLLQLCAEQKSLQHGKKVHSVINSSCNVVVLDSVLGSKLVFMYLNCGDLREG 403
            E++++T  S+L  CA   +L  G+ +H     +C     + V  + L+ MY  CG+L   
Sbjct: 293  EVDLTTLVSVLVACANIGNLSLGRALHGFGVKAC--FSEEVVFSNTLLDMYSKCGNLNGA 350

Query: 404  RRVFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGL 583
              VF ++    +  W  II+ Y + G Y +++ LF EM+  GV  + YT + ++      
Sbjct: 351  TEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACS 410

Query: 584  GSFVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCKKMEKARRVFDELSDRDVISWNSII 763
             S  +G + H YV++ G G +  V NALI  Y+KC  +E+AR VF ++  +D++SWN++I
Sbjct: 411  SSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMI 470

Query: 764  SGYSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLPACAERGSLLLGKALHGHVIKAESF 943
             GYS N L  +AL++F  M+   F+ D +TM  VLPACA   +L  G+ +HGH+++   F
Sbjct: 471  GGYSQNLLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF 529

Query: 944  DGEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWE 1123
              ++ V   LVDMY K G L  A  +F  I  + ++SWT M+AGY   G  + AI  F E
Sbjct: 530  -SDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNE 588

Query: 1124 MQ 1129
            M+
Sbjct: 589  MR 590



 Score =  146 bits (369), Expect = 8e-33
 Identities = 89/302 (29%), Positives = 149/302 (49%), Gaps = 3/302 (0%)
 Frame = +2

Query: 239  TYCSLLQLCAEQKSLQHGKKVHSVI---NSSCNVVVLDSVLGSKLVFMYLNCGDLREGRR 409
            T+  +L+  A    ++  K+VH  +       N  V++S++ +     Y   G +     
Sbjct: 197  TFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAA-----YFKFGGVESAHN 251

Query: 410  VFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGS 589
            +F+ + +  V  WN +I+     G     + +F +M  LGVE +  T   VL     +G+
Sbjct: 252  LFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGN 311

Query: 590  FVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCKKMEKARRVFDELSDRDVISWNSIISG 769
               G   HG+ ++  +       N L+  YSKC  +  A  VF ++ D  ++SW SII+ 
Sbjct: 312  LSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAA 371

Query: 770  YSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLPACAERGSLLLGKALHGHVIKAESFDG 949
            Y   GL   A+ +F  M+  G   D+ T+ S++ ACA   SL  G+ +H +VIK      
Sbjct: 372  YVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK-NGMGS 430

Query: 950  EIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQ 1129
             + V N L++MY K G +  A  VF KI  + +VSW +M+ GY++    + A+ELF +MQ
Sbjct: 431  NLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQ 490

Query: 1130 AE 1135
             +
Sbjct: 491  KQ 492



 Score =  133 bits (335), Expect = 7e-29
 Identities = 82/283 (28%), Positives = 145/283 (51%), Gaps = 1/283 (0%)
 Frame = +2

Query: 230  EVSTYCSLLQLCAEQKSLQHGKKVHSVINSSCNVVVLDSVLGSKLVFMYLNCGDLREGRR 409
            ++ T  S++  CA   SL  G+ VHS +    N +  +  + + L+ MY  CG + E R 
Sbjct: 396  DIYTVTSIVHACACSSSLDKGRDVHSYVIK--NGMGSNLPVTNALINMYAKCGSVEEARL 453

Query: 410  VFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGS 589
            VF++I  + +  WN +I  Y++     E++ LF +M+K   + +  T +CVL    GL +
Sbjct: 454  VFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAA 512

Query: 590  FVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCKKMEKARRVFDELSDRDVISWNSIISG 769
              +G E HG++LR GY     V  AL+  Y+KC  +  A+ +FD +  +D+ISW  +I+G
Sbjct: 513  LDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAG 572

Query: 770  YSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLPACAERGSLLLGKALHGHVIKAESFDG 949
            Y  +G   +A+  F+ MR +G E D  +  ++L AC+  G L  G      +      + 
Sbjct: 573  YGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEP 632

Query: 950  EIIVNNTLVDMYTKRGDLNSAMRVFGKIDNR-SVVSWTSMLAG 1075
            ++     +VD+  + G+L+ A +    +  +     W  +L+G
Sbjct: 633  KLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 675


>ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  352 bits (902), Expect = 1e-94
 Identities = 178/335 (53%), Positives = 242/335 (72%), Gaps = 1/335 (0%)
 Frame = +2

Query: 134  KTGPNKEICRLCELGNLQKAVFTLSNTCTSEIEVSTYCSLLQLCAEQKSLQHGKKVHSVI 313
            K   N +IC+ CE+G+L+ AV  L  +  SE++++ Y S+LQLCAE K LQ GK VHSVI
Sbjct: 418  KLDENTKICKFCEVGDLRNAVELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVI 477

Query: 314  NSSCNVVVLDSVLGSKLVFMYLNCGDLREGRRVFNRIKKE-KVFLWNFIISEYAKIGDYK 490
            +S  N + ++ VLG+KLVFMY++CG LREGRR+F+ I  + KVFLWN ++SEYAKIGDY+
Sbjct: 478  SS--NGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYR 535

Query: 491  ESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVGNALI 670
            ES+ LF++M+KLG+ GN YTFSC+LKCF  LG   E +  HG V +LG+G  N V N+LI
Sbjct: 536  ESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLI 595

Query: 671  AFYSKCKKMEKARRVFDELSDRDVISWNSIISGYSSNGLSEKALQIFSMMRFSGFEVDVV 850
            A Y K  +++ A ++FDEL DRDV+SWNS+ISG   NG S  AL+ F  M      VD+ 
Sbjct: 596  ATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLA 655

Query: 851  TMVSVLPACAERGSLLLGKALHGHVIKAESFDGEIIVNNTLVDMYTKRGDLNSAMRVFGK 1030
            T+V+ + ACA  GSL LG+ALHG  +KA  F  E++ NNTL+DMY+K G+LN A++ F K
Sbjct: 656  TLVNSVAACANVGSLSLGRALHGQGVKA-CFSREVMFNNTLLDMYSKCGNLNDAIQAFEK 714

Query: 1031 IDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQAE 1135
            +  ++VVSWTS++A Y R G YD AI LF+EM+++
Sbjct: 715  MGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESK 749



 Score =  172 bits (436), Expect = 1e-40
 Identities = 93/301 (30%), Positives = 163/301 (54%)
 Frame = +2

Query: 227  IEVSTYCSLLQLCAEQKSLQHGKKVHSVINSSCNVVVLDSVLGSKLVFMYLNCGDLREGR 406
            ++++T  + +  CA   SL  G+ +H     +C     + +  + L+ MY  CG+L +  
Sbjct: 652  VDLATLVNSVAACANVGSLSLGRALHGQGVKAC--FSREVMFNNTLLDMYSKCGNLNDAI 709

Query: 407  RVFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLG 586
            + F ++ ++ V  W  +I+ Y + G Y +++ LF EM   GV  + Y+ + VL       
Sbjct: 710  QAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGN 769

Query: 587  SFVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCKKMEKARRVFDELSDRDVISWNSIIS 766
            S  +G + H Y+ +        V NAL+  Y+KC  ME+A  VF ++  +D++SWN++I 
Sbjct: 770  SLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIG 829

Query: 767  GYSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLPACAERGSLLLGKALHGHVIKAESFD 946
            GYS N L  +AL++F+ M+      D +TM  +LPAC    +L +G+ +HG +++   + 
Sbjct: 830  GYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILR-NGYS 887

Query: 947  GEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEM 1126
             E+ V N L+DMY K G L  A  +F  I  + +++WT M++G    G  + AI  F +M
Sbjct: 888  SELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKM 947

Query: 1127 Q 1129
            +
Sbjct: 948  R 948



 Score =  143 bits (360), Expect = 9e-32
 Identities = 88/283 (31%), Positives = 143/283 (50%), Gaps = 1/283 (0%)
 Frame = +2

Query: 230  EVSTYCSLLQLCAEQKSLQHGKKVHSVINSSCNVVVLDSVLGSKLVFMYLNCGDLREGRR 409
            +V +  S+L  CA   SL  G+ VH+ I    N + L   + + L+ MY  CG + E   
Sbjct: 754  DVYSMTSVLHACACGNSLDKGRDVHNYIRK--NNMALCLPVSNALMDMYAKCGSMEEAYL 811

Query: 410  VFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGS 589
            VF++I  + +  WN +I  Y+K     E++ LF EM+K     +  T +C+L   G L +
Sbjct: 812  VFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAA 870

Query: 590  FVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCKKMEKARRVFDELSDRDVISWNSIISG 769
               G   HG +LR GY     V NALI  Y KC  +  AR +FD + ++D+I+W  +ISG
Sbjct: 871  LEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISG 930

Query: 770  YSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLPACAERGSLLLGKALHGHVIKAESFDG 949
               +GL  +A+  F  MR +G + D +T  S+L AC+  G L  G      +I   + + 
Sbjct: 931  CGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEP 990

Query: 950  EIIVNNTLVDMYTKRGDLNSAMRVFGKIDNR-SVVSWTSMLAG 1075
            ++     +VD+  + G+L+ A  +   +  +     W ++L G
Sbjct: 991  KLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCG 1033



 Score =  135 bits (340), Expect = 2e-29
 Identities = 88/303 (29%), Positives = 147/303 (48%), Gaps = 4/303 (1%)
 Frame = +2

Query: 239  TYCSLLQLCAEQKSLQHGKKVHSVINS----SCNVVVLDSVLGSKLVFMYLNCGDLREGR 406
            T+  +L+  A    +   K++H  +      S N VV      + L+  Y   G++    
Sbjct: 555  TFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVV------NSLIATYFKSGEVDSAH 608

Query: 407  RVFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLG 586
            ++F+ +    V  WN +IS     G    ++  F +M  L V  +  T    +     +G
Sbjct: 609  KLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVG 668

Query: 587  SFVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCKKMEKARRVFDELSDRDVISWNSIIS 766
            S   G   HG  ++  +       N L+  YSKC  +  A + F+++  + V+SW S+I+
Sbjct: 669  SLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIA 728

Query: 767  GYSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLPACAERGSLLLGKALHGHVIKAESFD 946
             Y   GL + A+++F  M   G   DV +M SVL ACA   SL  G+ +H + I+  +  
Sbjct: 729  AYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNY-IRKNNMA 787

Query: 947  GEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEM 1126
              + V+N L+DMY K G +  A  VF +I  + +VSW +M+ GY++    + A++LF EM
Sbjct: 788  LCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEM 847

Query: 1127 QAE 1135
            Q E
Sbjct: 848  QKE 850


>ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355509063|gb|AES90205.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  350 bits (897), Expect = 5e-94
 Identities = 180/340 (52%), Positives = 246/340 (72%), Gaps = 1/340 (0%)
 Frame = +2

Query: 119  NTIHPKT-GPNKEICRLCELGNLQKAVFTLSNTCTSEIEVSTYCSLLQLCAEQKSLQHGK 295
            NT H  T   N +I + CE+G+L+ A+  L+ + + E+ +++YCS+LQLCAE+KSL+ GK
Sbjct: 330  NTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGK 389

Query: 296  KVHSVINSSCNVVVLDSVLGSKLVFMYLNCGDLREGRRVFNRIKKEKVFLWNFIISEYAK 475
            +VHSVI S  N + +D  LG+KLVFMY+NCGDL +GR++F++I  +KVFLWN ++SEYAK
Sbjct: 390  RVHSVIIS--NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAK 447

Query: 476  IGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRV 655
            IG+++ESV LF++M+KLGV GN YTF+CVLKCF  LG   E +  HGYVL+LG+G +  V
Sbjct: 448  IGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAV 507

Query: 656  GNALIAFYSKCKKMEKARRVFDELSDRDVISWNSIISGYSSNGLSEKALQIFSMMRFSGF 835
             N+LIA Y K   +E A  +FDELS+ DV+SWNS+I+G   NG S   L+IF  M   G 
Sbjct: 508  VNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV 567

Query: 836  EVDVVTMVSVLPACAERGSLLLGKALHGHVIKAESFDGEIIVNNTLVDMYTKRGDLNSAM 1015
            EVD+ T+VSVL A A  G+L LG+ALHG  +KA  F  E++ +NTL+DMY+K G+LN A 
Sbjct: 568  EVDLTTLVSVLVAWANIGNLSLGRALHGFGVKA-CFSEEVVFSNTLLDMYSKCGNLNGAT 626

Query: 1016 RVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQAE 1135
             VF K+ + ++VSWTS +A Y R G Y  AI LF EMQ++
Sbjct: 627  EVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSK 666



 Score =  184 bits (466), Expect = 5e-44
 Identities = 106/302 (35%), Positives = 168/302 (55%)
 Frame = +2

Query: 224  EIEVSTYCSLLQLCAEQKSLQHGKKVHSVINSSCNVVVLDSVLGSKLVFMYLNCGDLREG 403
            E++++T  S+L   A   +L  G+ +H     +C     + V  + L+ MY  CG+L   
Sbjct: 568  EVDLTTLVSVLVAWANIGNLSLGRALHGFGVKAC--FSEEVVFSNTLLDMYSKCGNLNGA 625

Query: 404  RRVFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGL 583
              VF ++    +  W   I+ Y + G Y +++ LF EM+  GV  + YT + ++      
Sbjct: 626  TEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACS 685

Query: 584  GSFVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCKKMEKARRVFDELSDRDVISWNSII 763
             S  +G + H YV++ G G +  V NALI  Y+KC  +E+AR VF ++  +D++SWN++I
Sbjct: 686  SSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMI 745

Query: 764  SGYSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLPACAERGSLLLGKALHGHVIKAESF 943
             GYS N L  +AL++F  M+   F+ D +TM  VLPACA   +L  G+ +HGH+++   F
Sbjct: 746  GGYSQNSLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF 804

Query: 944  DGEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWE 1123
              ++ V   LVDMY K G L  A  +F  I  + ++SWT M+AGY   G  + AI  F E
Sbjct: 805  -SDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNE 863

Query: 1124 MQ 1129
            M+
Sbjct: 864  MR 865



 Score =  147 bits (371), Expect = 5e-33
 Identities = 88/302 (29%), Positives = 149/302 (49%), Gaps = 3/302 (0%)
 Frame = +2

Query: 239  TYCSLLQLCAEQKSLQHGKKVHSVI---NSSCNVVVLDSVLGSKLVFMYLNCGDLREGRR 409
            T+  +L+  A    ++  K+VH  +       N  V++S++ +     Y   G +     
Sbjct: 472  TFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAA-----YFKFGGVESAHN 526

Query: 410  VFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGS 589
            +F+ + +  V  WN +I+     G     + +F +M  LGVE +  T   VL  +  +G+
Sbjct: 527  LFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGN 586

Query: 590  FVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCKKMEKARRVFDELSDRDVISWNSIISG 769
               G   HG+ ++  +       N L+  YSKC  +  A  VF ++ D  ++SW S I+ 
Sbjct: 587  LSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAA 646

Query: 770  YSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLPACAERGSLLLGKALHGHVIKAESFDG 949
            Y   GL   A+ +F  M+  G   D+ T+ S++ ACA   SL  G+ +H +VIK      
Sbjct: 647  YVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK-NGMGS 705

Query: 950  EIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQ 1129
             + V N L++MY K G +  A  VF KI  + +VSW +M+ GY++    + A+ELF +MQ
Sbjct: 706  NLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ 765

Query: 1130 AE 1135
             +
Sbjct: 766  KQ 767



 Score =  134 bits (336), Expect = 5e-29
 Identities = 82/283 (28%), Positives = 144/283 (50%), Gaps = 1/283 (0%)
 Frame = +2

Query: 230  EVSTYCSLLQLCAEQKSLQHGKKVHSVINSSCNVVVLDSVLGSKLVFMYLNCGDLREGRR 409
            ++ T  S++  CA   SL  G+ VHS +    N +  +  + + L+ MY  CG + E R 
Sbjct: 671  DIYTVTSIVHACACSSSLDKGRDVHSYVIK--NGMGSNLPVTNALINMYAKCGSVEEARL 728

Query: 410  VFNRIKKEKVFLWNFIISEYAKIGDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGS 589
            VF++I  + +  WN +I  Y++     E++ LF +M+K   + +  T +CVL    GL +
Sbjct: 729  VFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAA 787

Query: 590  FVEGEETHGYVLRLGYGCSNRVGNALIAFYSKCKKMEKARRVFDELSDRDVISWNSIISG 769
              +G E HG++LR GY     V  AL+  Y+KC  +  A+ +FD +  +D+ISW  +I+G
Sbjct: 788  LDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAG 847

Query: 770  YSSNGLSEKALQIFSMMRFSGFEVDVVTMVSVLPACAERGSLLLGKALHGHVIKAESFDG 949
            Y  +G   +A+  F+ MR +G E D  +   +L AC+  G L  G      +      + 
Sbjct: 848  YGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEP 907

Query: 950  EIIVNNTLVDMYTKRGDLNSAMRVFGKIDNR-SVVSWTSMLAG 1075
            ++     +VD+  + G+L+ A +    +  +     W  +L+G
Sbjct: 908  KLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 950