BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022688
         (1197 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36837.3| unnamed protein product [Vitis vinifera]              377   e-102
ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2...   362   1e-97
ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|2...   358   1e-96
ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [...   355   1e-95
ref|XP_004136035.1| PREDICTED: mismatch repair endonuclease PMS2...   346   8e-93

>emb|CBI36837.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  377 bits (969), Expect = e-102
 Identities = 193/314 (61%), Positives = 230/314 (73%), Gaps = 5/314 (1%)
 Frame = -3

Query: 1132 DALTDKDPQSIPQVLSIADTSNAVLDAP----PVPSSGLDLCSVLQFSMKDLIISR-QKL 968
            D  T         +  ++  ++AV D P    P+PSS L +CS LQFS ++L   R Q+L
Sbjct: 518  DVATTASLSEEKNISDLSGVASAVQDTPVLDTPMPSSDLKICSTLQFSFEELRTRRHQRL 577

Query: 967  SRLRSSGFSNESKKINRCFTAATLELSQPDNXXXXXXXXXXXXXXXXRLFNKQDFGRMKV 788
            SRL+SS +        RC++AATLE SQP+N                +LF KQDFGRMKV
Sbjct: 578  SRLQSSSYKCGRTTTERCYSAATLEFSQPENEERKVRALAAATTELEKLFKKQDFGRMKV 637

Query: 787  IGQFNLGFIIGRLDQDLFIIDQHAADEKHNFERLSQSTIXXXXXXXXXXXXXXXXXXEIV 608
            IGQFNLGFIIG+LDQDLFI+DQHAADEK+NFE L+QST+                  E++
Sbjct: 638  IGQFNLGFIIGKLDQDLFIVDQHAADEKYNFEHLAQSTVLNQQPLLRPLRLDLSPEEEVI 697

Query: 607  ATMHMDIIRKNGFTLVDELDAPPGQRFKLKAVPFSKNITFGAEDVKELISTLSDSQGECT 428
            A++HMDIIRKNGF L ++L APPGQRFKLKAVPFSKNITFG EDVKELISTL+D QGEC+
Sbjct: 698  ASIHMDIIRKNGFALEEDLHAPPGQRFKLKAVPFSKNITFGVEDVKELISTLADGQGECS 757

Query: 427  MMSSYKMDSLDSICPSRVRAMLASRACRSSVMIGDPLGKNEMQKILEHLAKLKSPWNCPH 248
            ++ +YKMD+ DSICPSRVRAMLASRACRSSVMIGDPLG+ EMQ+ILEHL+ LKSPWNCPH
Sbjct: 758  ILGTYKMDTCDSICPSRVRAMLASRACRSSVMIGDPLGRKEMQRILEHLSDLKSPWNCPH 817

Query: 247  GRPTMRHLIDLTTI 206
            GRPTMRHL+DLTTI
Sbjct: 818  GRPTMRHLVDLTTI 831


>ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2-like [Vitis vinifera]
          Length = 937

 Score =  362 bits (928), Expect = 1e-97
 Identities = 185/313 (59%), Positives = 222/313 (70%), Gaps = 4/313 (1%)
 Frame = -3

Query: 1132 DALTDKDPQSIPQVLSIADTSNAVLDAP----PVPSSGLDLCSVLQFSMKDLIISRQKLS 965
            D  T         +  ++  ++AV D P    P+PSS L +CS LQFS ++L        
Sbjct: 619  DVATTASLSEEKNISDLSGVASAVQDTPVLDTPMPSSDLKICSTLQFSFEEL-------- 670

Query: 964  RLRSSGFSNESKKINRCFTAATLELSQPDNXXXXXXXXXXXXXXXXRLFNKQDFGRMKVI 785
                      +++  RC++AATLE SQP+N                +LF KQDFGRMKVI
Sbjct: 671  ---------RTRRHQRCYSAATLEFSQPENEERKVRALAAATTELEKLFKKQDFGRMKVI 721

Query: 784  GQFNLGFIIGRLDQDLFIIDQHAADEKHNFERLSQSTIXXXXXXXXXXXXXXXXXXEIVA 605
            GQFNLGFIIG+LDQDLFI+DQHAADEK+NFE L+QST+                  E++A
Sbjct: 722  GQFNLGFIIGKLDQDLFIVDQHAADEKYNFEHLAQSTVLNQQPLLRPLRLDLSPEEEVIA 781

Query: 604  TMHMDIIRKNGFTLVDELDAPPGQRFKLKAVPFSKNITFGAEDVKELISTLSDSQGECTM 425
            ++HMDIIRKNGF L ++L APPGQRFKLKAVPFSKNITFG EDVKELISTL+D QGEC++
Sbjct: 782  SIHMDIIRKNGFALEEDLHAPPGQRFKLKAVPFSKNITFGVEDVKELISTLADGQGECSI 841

Query: 424  MSSYKMDSLDSICPSRVRAMLASRACRSSVMIGDPLGKNEMQKILEHLAKLKSPWNCPHG 245
            + +YKMD+ DSICPSRVRAMLASRACRSSVMIGDPLG+ EMQ+ILEHL+ LKSPWNCPHG
Sbjct: 842  LGTYKMDTCDSICPSRVRAMLASRACRSSVMIGDPLGRKEMQRILEHLSDLKSPWNCPHG 901

Query: 244  RPTMRHLIDLTTI 206
            RPTMRHL+DLTTI
Sbjct: 902  RPTMRHLVDLTTI 914


>ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|222861786|gb|EEE99328.1|
            predicted protein [Populus trichocarpa]
          Length = 915

 Score =  358 bits (919), Expect = 1e-96
 Identities = 191/308 (62%), Positives = 226/308 (73%), Gaps = 2/308 (0%)
 Frame = -3

Query: 1108 QSIPQVLSIADTSNAVLDAPPVPSSGLDLCSVLQFSMKDLIISR-QKLSRLRSSGFS-NE 935
            + +P     A +S  +LDAP VP S   +CS LQFS +DL   R Q+LSRL+S  F+   
Sbjct: 603  EDLPVASPPAQSSIELLDAP-VPFSAQQICSTLQFSFQDLHSRRMQRLSRLQSGKFTFGG 661

Query: 934  SKKINRCFTAATLELSQPDNXXXXXXXXXXXXXXXXRLFNKQDFGRMKVIGQFNLGFIIG 755
            SK+ +R + AATLELSQPDN                RLF K+DFGRMKVIGQFNLGFIIG
Sbjct: 662  SKRSHRSYAAATLELSQPDNEERKLRALAAATTELERLFRKEDFGRMKVIGQFNLGFIIG 721

Query: 754  RLDQDLFIIDQHAADEKHNFERLSQSTIXXXXXXXXXXXXXXXXXXEIVATMHMDIIRKN 575
            +LDQDLFI+DQHAADEK+NFERL QSTI                  E+VA+M++DIIRKN
Sbjct: 722  KLDQDLFIVDQHAADEKYNFERLCQSTILNQQPLLRPLRLELSPEEEVVASMNLDIIRKN 781

Query: 574  GFTLVDELDAPPGQRFKLKAVPFSKNITFGAEDVKELISTLSDSQGECTMMSSYKMDSLD 395
            GF L ++  A PG  FKLKAVPFSKNITFG EDVK+LISTL+DSQGEC+++S YKMD+ D
Sbjct: 782  GFALEEDPHALPGHHFKLKAVPFSKNITFGVEDVKDLISTLADSQGECSIISRYKMDTAD 841

Query: 394  SICPSRVRAMLASRACRSSVMIGDPLGKNEMQKILEHLAKLKSPWNCPHGRPTMRHLIDL 215
            S+CPSRV AM ASRACRSSVMIGD LG+NEMQKILEHL  LKSPWNCPHGRPTMRHLID+
Sbjct: 842  SVCPSRVHAMFASRACRSSVMIGDALGRNEMQKILEHLVDLKSPWNCPHGRPTMRHLIDM 901

Query: 214  TTINNKQE 191
            ++I  + +
Sbjct: 902  SSIYERPD 909


>ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [Ricinus communis]
            gi|223537618|gb|EEF39241.1| DNA mismatch repair protein
            pms2, putative [Ricinus communis]
          Length = 924

 Score =  355 bits (912), Expect = 1e-95
 Identities = 191/337 (56%), Positives = 238/337 (70%), Gaps = 7/337 (2%)
 Frame = -3

Query: 1195 GYEEEISEHQKKSLLDVDVTMDALTDKDPQSIPQVLSIA----DTSNAVLDAPPVPSSGL 1028
            G  ++ SE  +K     DV  D    +  +++ + L +      +S+A+LD P    S  
Sbjct: 579  GKPKDDSEGAEKLSFIADVAPDTSPSRGLENMSEDLILTAPPLQSSSALLDVPK--PSAH 636

Query: 1027 DLCSVLQFSMKDLIISRQ-KLSRLRSSGFSNESKKI--NRCFTAATLELSQPDNXXXXXX 857
            ++CS LQF+ ++L   RQ + S L+ SG+++   K+  +R + AATLELSQPDN      
Sbjct: 637  EICSTLQFNFQELKAKRQQRRSILQFSGYASGGMKMKSHRTYAAATLELSQPDNEERKAR 696

Query: 856  XXXXXXXXXXRLFNKQDFGRMKVIGQFNLGFIIGRLDQDLFIIDQHAADEKHNFERLSQS 677
                      R+F KQDFGRMKVIGQFNLGFIIG+LDQDLFI+DQHAADEK+NFE L QS
Sbjct: 697  ALAAATTELERIFRKQDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFEHLCQS 756

Query: 676  TIXXXXXXXXXXXXXXXXXXEIVATMHMDIIRKNGFTLVDELDAPPGQRFKLKAVPFSKN 497
            TI                  E+VA+M+M++IRKNGF L ++  APPG RFKLKAVPFSKN
Sbjct: 757  TILNQQPLLRSLRLELSPEEEVVASMNMELIRKNGFALEEDPHAPPGHRFKLKAVPFSKN 816

Query: 496  ITFGAEDVKELISTLSDSQGECTMMSSYKMDSLDSICPSRVRAMLASRACRSSVMIGDPL 317
            ITFG EDVK+LISTL+DSQG+C+++ SYKMD  DS+CPSRVR MLASRACRSSVMIGDPL
Sbjct: 817  ITFGVEDVKDLISTLADSQGDCSIIGSYKMDKSDSVCPSRVRTMLASRACRSSVMIGDPL 876

Query: 316  GKNEMQKILEHLAKLKSPWNCPHGRPTMRHLIDLTTI 206
            G+NEMQKILEHLA L SPWNCPHGRPTMRHL+D+T+I
Sbjct: 877  GRNEMQKILEHLADLNSPWNCPHGRPTMRHLVDMTSI 913


>ref|XP_004136035.1| PREDICTED: mismatch repair endonuclease PMS2-like [Cucumis sativus]
            gi|449498483|ref|XP_004160549.1| PREDICTED: mismatch
            repair endonuclease PMS2-like [Cucumis sativus]
          Length = 921

 Score =  346 bits (887), Expect = 8e-93
 Identities = 176/286 (61%), Positives = 212/286 (74%), Gaps = 1/286 (0%)
 Frame = -3

Query: 1039 SSGLDLCSVLQFSMKDLIISR-QKLSRLRSSGFSNESKKINRCFTAATLELSQPDNXXXX 863
            S  L LCS   F   +L   R Q+  R + +G++ E KK+   + AATL+LSQ DN    
Sbjct: 633  SPQLKLCSTFHFDFHELKKRRFQRQLRFKLNGYTCERKKLKCHYAAATLKLSQTDNEDRK 692

Query: 862  XXXXXXXXXXXXRLFNKQDFGRMKVIGQFNLGFIIGRLDQDLFIIDQHAADEKHNFERLS 683
                        RLF K+DF RMKVIGQFNLGFIIG+LDQDLFI+DQHAADEK+NFERLS
Sbjct: 693  ARALEAAARELDRLFRKKDFSRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLS 752

Query: 682  QSTIXXXXXXXXXXXXXXXXXXEIVATMHMDIIRKNGFTLVDELDAPPGQRFKLKAVPFS 503
            QSTI                  E+V ++HMD+ RKNGFT+ ++  + PG RF+LKAVPFS
Sbjct: 753  QSTILNQQPLLRPLGLELSAEEEVVVSIHMDVFRKNGFTIEEDPRSLPGNRFRLKAVPFS 812

Query: 502  KNITFGAEDVKELISTLSDSQGECTMMSSYKMDSLDSICPSRVRAMLASRACRSSVMIGD 323
            KNITFG EDVK+LISTL+DS+GEC+++ SY+MD+ DS+CPSRVRAMLASRACRSSVMIGD
Sbjct: 813  KNITFGVEDVKDLISTLADSEGECSIIGSYRMDTADSVCPSRVRAMLASRACRSSVMIGD 872

Query: 322  PLGKNEMQKILEHLAKLKSPWNCPHGRPTMRHLIDLTTINNKQELE 185
            PLG+NEMQKILEHLA+LKSPWNCPHGRPTMRHL+DLTT+   +E E
Sbjct: 873  PLGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTTVKRSEESE 918