BLASTX nr result

ID: Coptis24_contig00022674 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022674
         (215 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004160655.1| PREDICTED: SWI/SNF-related matrix-associated...    94   5e-21
ref|XP_004147667.1| PREDICTED: SWI/SNF-related matrix-associated...    94   5e-21
gb|ADN34041.1| chromatin remodelling complex ATPase chain isw-1 ...    93   1e-20
ref|XP_003550580.1| PREDICTED: SWI/SNF-related matrix-associated...    97   1e-18
ref|XP_002269671.1| PREDICTED: SWI/SNF-related matrix-associated...    97   1e-18

>ref|XP_004160655.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Cucumis sativus]
          Length = 725

 Score = 94.4 bits (233), Expect(2) = 5e-21
 Identities = 47/57 (82%), Positives = 52/57 (91%)
 Frame = -3

Query: 171 FRRKKASKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDIIQAEDRVHHIGQVASV 1
           F++K +  AAVLSIKAGGVGLTLTAASTVIFAELSWTPGD+IQAEDR H IGQV+SV
Sbjct: 588 FQQKDSIMAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSV 644



 Score = 31.6 bits (70), Expect(2) = 5e-21
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -2

Query: 214 GGTPASSRQALVTNFQEKEGI 152
           GGTP + RQALV+ FQ+K+ I
Sbjct: 574 GGTPPAMRQALVSEFQQKDSI 594


>ref|XP_004147667.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Cucumis sativus]
          Length = 725

 Score = 94.4 bits (233), Expect(2) = 5e-21
 Identities = 47/57 (82%), Positives = 52/57 (91%)
 Frame = -3

Query: 171 FRRKKASKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDIIQAEDRVHHIGQVASV 1
           F++K +  AAVLSIKAGGVGLTLTAASTVIFAELSWTPGD+IQAEDR H IGQV+SV
Sbjct: 588 FQQKDSIMAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSV 644



 Score = 31.6 bits (70), Expect(2) = 5e-21
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -2

Query: 214 GGTPASSRQALVTNFQEKEGI 152
           GGTP + RQALV+ FQ+K+ I
Sbjct: 574 GGTPPAMRQALVSEFQQKDSI 594


>gb|ADN34041.1| chromatin remodelling complex ATPase chain isw-1 [Cucumis melo
           subsp. melo]
          Length = 385

 Score = 92.8 bits (229), Expect(2) = 1e-20
 Identities = 46/57 (80%), Positives = 51/57 (89%)
 Frame = -3

Query: 171 FRRKKASKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDIIQAEDRVHHIGQVASV 1
           F++K +  AAVLSIKAGGVGLTLTAASTVIF ELSWTPGD+IQAEDR H IGQV+SV
Sbjct: 248 FQQKDSIMAAVLSIKAGGVGLTLTAASTVIFTELSWTPGDLIQAEDRAHRIGQVSSV 304



 Score = 32.0 bits (71), Expect(2) = 1e-20
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = -2

Query: 214 GGTPASSRQALVTNFQEKEGI 152
           GGTP + RQALV++FQ+K+ I
Sbjct: 234 GGTPPAMRQALVSDFQQKDSI 254


>ref|XP_003550580.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Glycine max]
          Length = 751

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 49/57 (85%), Positives = 52/57 (91%)
 Frame = -3

Query: 171 FRRKKASKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDIIQAEDRVHHIGQVASV 1
           F+ K A KAAVLSIKAGGVGLTLTAASTVIFAELSWTPGD+IQAEDR H IGQV+SV
Sbjct: 594 FQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSV 650


>ref|XP_002269671.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1 [Vitis
           vinifera] gi|297736823|emb|CBI26024.3| unnamed protein
           product [Vitis vinifera]
          Length = 677

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 49/57 (85%), Positives = 52/57 (91%)
 Frame = -3

Query: 171 FRRKKASKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDIIQAEDRVHHIGQVASV 1
           F+ K   KAAVLSIKAGGVGLTLTAASTVIFAELSWTPGD+IQAEDRVH IGQV+SV
Sbjct: 543 FQEKDTIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSV 599


Top