BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022665
         (1361 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319944.1| f-box family protein [Populus trichocarpa] g...    82   4e-13
ref|XP_002276216.1| PREDICTED: putative F-box/FBD/LRR-repeat pro...    79   4e-12
ref|NP_173374.1| FBD / Leucine Rich Repeat domains containing pr...    72   3e-10
ref|XP_002522710.1| conserved hypothetical protein [Ricinus comm...    71   7e-10
ref|XP_002865315.1| F-box family protein [Arabidopsis lyrata sub...    67   8e-09

>ref|XP_002319944.1| f-box family protein [Populus trichocarpa]
            gi|222858320|gb|EEE95867.1| f-box family protein [Populus
            trichocarpa]
          Length = 511

 Score = 81.6 bits (200), Expect = 4e-13
 Identities = 98/348 (28%), Positives = 158/348 (45%), Gaps = 30/348 (8%)
 Frame = +3

Query: 3    NVQEIHLKLSS----ELPQCIFNWKSLRVLKLKG-VDGFLWLRNP-HSVDLPLLKSLHLT 164
            NVQE+ +++++      P+ +   +SLRVLKL+    GF  L +   ++  P L +L L+
Sbjct: 133  NVQELDVEVATGDYFNFPRGVITSESLRVLKLRSRYPGFRLLPSSVMTIGFPSLHTLSLS 192

Query: 165  RVVL-DMTLVNDCL--SKCPALEVLSLKCCEFMH--------LEDLIVSSP-QLKKLVII 308
             V+L + + + D    S  P L+ L+L  C  M         LEDL + +  QL  L I 
Sbjct: 193  LVILYEQSSLLDLFTESSFPCLKNLNLDACFGMKHLKVCCRALEDLTIENCFQLHSLDIC 252

Query: 309  TYDQNY----GCFKHYDTKIW----APKLTFLKVR-DYISKRFSLDNLSSLESAVIDLKV 461
            +          CF  Y  K W    AP+L  +    + I+   SL NL+SL  A +   +
Sbjct: 253  SAKLENLRVASCFDAYSDKTWFKVNAPRLRGISWEYNSITASSSLVNLTSLHEASVGFSL 312

Query: 462  NEHFVPLGTKQENAKRVIQVLEGLCHXXXXXXXXXXXXMFSSALKIQRMSSQFSNLRHFK 641
                + +    E  + V   L GL H            + S+   I  +   F+NL+  +
Sbjct: 313  LHENLSV----EKLQSVCNFLSGLSHVHSLTLDSQCVEILSNKNDIINLLHPFNNLKVLE 368

Query: 642  LTSS--PNDACDLLQLLMDSPNIKTLLLKMTWTNFNSYQGRLYWDEPSFYSTIMEANWEE 815
            L +    N+   L  L   SP + TL+LK+   +F + + +   D     ++  E  WE 
Sbjct: 369  LHTGFEKNNVPGLAFLFRSSPTLHTLILKII-NDFKTERRQWNRDLWDLSTSAEEQYWES 427

Query: 816  WLQ-FQCLLEHLESVEIRNFLGCENEVRLLIVLLQKATALRKIKIVLA 956
             LQ  +  L+HL+ V+I  FL CENEV L   LL+    L+++ +  A
Sbjct: 428  QLQALRPFLDHLKVVKIHGFLECENEVSLAKFLLKHGKDLQEMTLCTA 475


>ref|XP_002276216.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220-like
            [Vitis vinifera]
          Length = 513

 Score = 78.6 bits (192), Expect = 4e-12
 Identities = 96/356 (26%), Positives = 159/356 (44%), Gaps = 43/356 (12%)
 Frame = +3

Query: 3    NVQEIHLKLSSE----LPQCIFNWKSLRVLKLK-GVDGFLWLRNPHSVDL----PLLKSL 155
            NVQ++ + + ++    LP+C+   +SL+ L LK    GF   R P S+ +      L++L
Sbjct: 137  NVQDLDIDVCTDDYFNLPRCVVMSESLKALSLKFRPPGF---RLPPSMVMRGGFQSLQTL 193

Query: 156  HLTRVV-------LDM-------TLVNDCLSKCPALEVLSLKCCEFM--------HLEDL 269
             L+ +V       LD+        L    L  C  ++ L + C             L  L
Sbjct: 194  SLSHMVFYKKHYLLDLFAGSAFPVLRKLTLDSCRGIKFLDVGCRVLQDLTVENCFQLHGL 253

Query: 270  IVSSPQLKKLVIITYDQNYGCFKHYDTKIW----APKLTFLK-VRDYISKRFSLDNLSSL 434
             VS P+L++L +++      CF+    K W    AP+L  +    + I++   L+NL+S+
Sbjct: 254  TVSGPRLERLRVVS------CFESSSEKSWVKIIAPRLRVMHWEHNAITETSCLENLASM 307

Query: 435  ESAVIDLKVNEHFVPLGTKQENAKRVIQVLEGLCHXXXXXXXXXXXXMFSSALKIQRMSS 614
            E A I     +      T+ E  K V  +L GL H            + S+         
Sbjct: 308  EEAFIGFFALDE----DTRAEKYKSVSNILSGLSHAHCLTLQSQCIQILSNNHYSTISLH 363

Query: 615  QFSNLRHFKLTS--SPNDACDLLQLLMDSPNIKTLLLKMTWTNFNSYQGRLY----WDEP 776
             F NL+  KL +    N+   LL L   SP + TL+LK+  T+F + + + +    WD  
Sbjct: 364  PFHNLKTMKLHTVLDKNNIRGLLCLFRSSPTLHTLILKII-THFKAEKTKAWNKALWDHM 422

Query: 777  SFYSTIMEANWEEWLQ-FQCLLEHLESVEIRNFLGCENEVRLLIVLLQKATALRKI 941
            S  S+  E  WE   Q F+  L+HL+ V +   +  ENE+ L+  LL+   AL+++
Sbjct: 423  S--SSEQEQYWESRSQTFKSFLQHLKVVRMEGLVESENEIGLIKFLLKHGMALQEM 476


>ref|NP_173374.1| FBD / Leucine Rich Repeat domains containing protein [Arabidopsis
           thaliana] gi|332191729|gb|AEE29850.1| FBD / Leucine Rich
           Repeat domains containing protein [Arabidopsis thaliana]
          Length = 435

 Score = 72.0 bits (175), Expect = 3e-10
 Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 15/233 (6%)
 Frame = +3

Query: 66  SLRVLKLKGV----DGFLWLRNPHSVDLPLLKSLHLTRVV-LDMTLVNDCLSKCPALEVL 230
           SL+ L L+GV    + F  L   H+V  P LKSLHL  V+  D   +   L+ CP LE L
Sbjct: 125 SLKNLLLQGVRYVDESFQLLDESHTVCFPSLKSLHLKEVISSDERYLRSLLANCPVLEEL 184

Query: 231 SLKCCEFMHLEDLIVSSPQLKKLVI-ITYDQNYGCFKHYDTKIWAPKLTFLKVRDYISKR 407
            ++  E+  L  + +  P LK L + I  D++         +I AP L ++K+ D+   +
Sbjct: 185 VMELDEYDTLGAVHIIVPSLKSLSLDIDCDRSSNV-----VEIVAPSLEYIKLNDHSDNK 239

Query: 408 FSLDNLSSLESAVIDLKVNEH--FVPLGTKQENAKRVIQVLEGLCHXXXXXXXXXXXXMF 581
           F ++N+  LE A ID  + E+  F+   T  +  +    ++ G                 
Sbjct: 240 FLIENMPKLEEAYIDANIFEYEKFLGAFTSVKRLRASPSIVSGRISGDG----------L 289

Query: 582 SSALKIQRMSSQ------FSNLRHFKL-TSSPNDACDLLQLLMDSPNIKTLLL 719
           +  L +QR  ++      F+ L   K+ T  P  +  LL+LL  SPN+K L L
Sbjct: 290 NLCLMLQRSEARNVSAICFNQLESLKICTCKPYWSIILLRLLKGSPNLKVLEL 342


>ref|XP_002522710.1| conserved hypothetical protein [Ricinus communis]
            gi|223538060|gb|EEF39672.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 501

 Score = 70.9 bits (172), Expect = 7e-10
 Identities = 101/356 (28%), Positives = 155/356 (43%), Gaps = 37/356 (10%)
 Frame = +3

Query: 3    NVQEIHLKLSSE----LPQCIFNWKSLRVLKLKGV-DGFLWLRNPHSVD-LPLLKSLHLT 164
            NVQE+ +++++E     P+ +   K+LRVLKLK +  GF  L +    D    L+ L L+
Sbjct: 143  NVQELDVEVATEDHFNFPRGVITSKTLRVLKLKSMYPGFRLLPSSVMTDGFRSLQVLSLS 202

Query: 165  RVVL-DMTLVNDCL--SKCPALEVLSLKCCEFMHLEDLIVSSPQLKKLVIITYDQNYG-- 329
             V+L D + + D    S  P L+ L+L  C    L+ L +S   L+ L +    Q +G  
Sbjct: 203  LVILYDQSSLLDLFTESSFPRLKKLNLDAC--FGLKHLKISCRGLEDLTLENCFQLHGLE 260

Query: 330  -------------CFKHYDTKIWAPKLTFLKVR------DYISKRFSLDNLSSLESAVID 452
                         CF  Y  K W  K+    +R      + I+   SL+NL+SL  A + 
Sbjct: 261  ICCGKLDKLRVASCFDAYYEKSWV-KINSPNLRIVFWECNAITGTSSLENLTSLREASVG 319

Query: 453  LKVNEHFVPLGTKQENAKRVIQVLEGLCHXXXXXXXXXXXXMFSSALKIQRMSSQFSNLR 632
              +    V      E  + V  +L GL                S+A  +   S   SNL+
Sbjct: 320  FFLLHEDV----SAEKLQSVWDLLSGL----------------SNAYSLTLESDVLSNLK 359

Query: 633  HFKLTSSPN--DACDLLQLLMDSPNIKTLLLKMTWTNFNSYQGRLY----WDEPSFYSTI 794
              KL +  N  +   L  L   SP + TL+LK+   N    + R +    WD     +T 
Sbjct: 360  ILKLETGFNKSNVPGLASLFRSSPALHTLVLKII--NDCKIERRQWNRDLWD---MSTTK 414

Query: 795  MEANWEEWLQ-FQCLLEHLESVEIRNFLGCENEVRLLIVLLQKATALRKIKIVLAQ 959
             E  WE  +   +  L HL+ V+I  FL CENEV L   LL+    L+++ +  A+
Sbjct: 415  EEQFWESQIHTLKPFLSHLKVVKIHGFLECENEVSLAKFLLKHGKCLQEMTLCTAR 470


>ref|XP_002865315.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297311150|gb|EFH41574.1| F-box family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 67.4 bits (163), Expect = 8e-09
 Identities = 88/314 (28%), Positives = 130/314 (41%), Gaps = 11/314 (3%)
 Frame = +3

Query: 39  LPQCIFNWKSLRVLKLKGVDGFLWLRNPHSV-DLPLLKSLHLTRVVLDMTLVNDCLSKCP 215
           +P  IF  K+L  LKL  V     L NP  V  LP LK +HL  +     +V   LS CP
Sbjct: 126 MPSNIFKSKTLVSLKLVNVG----LDNPKFVVSLPCLKIMHLEDIFYSPLIVEKLLSSCP 181

Query: 216 ALEVLSLKCCEFMHLEDLIVSSPQLKKLVIITYDQNYGCFKHYDTKIWAPKLTFLKVRDY 395
            LE L++          L+V S  LK    +T+D   G    +  +I AP L ++  RD 
Sbjct: 182 VLEDLTIVRNHEDFFNFLLVRSQTLKTF-RLTFDWEMGS-TDFSVEIDAPGLKYMSFRDS 239

Query: 396 ISKRFSLDNLSSLESAVIDLKVNEHF---VPLGTKQENAKRVIQ-VLEGLCHXXXXXXXX 563
            S R  + NLSSL    +D + N  F    PL  +    + +I+  L G+          
Sbjct: 240 QSDRIVVKNLSSLVKIDLDTEFNLKFGLGSPLEPEDLTKRDIIRDFLTGISSVKHMIISH 299

Query: 564 XXXXMFSSALKIQRMSSQFSNLRHFKLTSSPNDACDLLQLLMD----SPNIKTLLLKMTW 731
               +     K+  +  +F NL H +   S      LL LL D     PN+K L+L    
Sbjct: 300 PTLEVLYRYSKLGPL-PKFHNLYHLRAAFSSL----LLPLLSDFLEICPNLKNLILD--- 351

Query: 732 TNFNSYQGRLYWDEPSFYSTIMEANWEEWLQF-QCLLEHLESVEIRNF-LGCENEVRLLI 905
                            YS   E    ++    QCL+  LE VEI+   +  E  ++L+ 
Sbjct: 352 -----------------YSVSAEPEQIDFTNVPQCLILTLEYVEIKELTMREETGIKLVN 394

Query: 906 VLLQKATALRKIKI 947
             L+ +  L+K+ +
Sbjct: 395 YFLENSAVLKKLTL 408