BLASTX nr result
ID: Coptis24_contig00022665
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00022665 (1361 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002319944.1| f-box family protein [Populus trichocarpa] g... 82 4e-13 ref|XP_002276216.1| PREDICTED: putative F-box/FBD/LRR-repeat pro... 79 4e-12 ref|NP_173374.1| FBD / Leucine Rich Repeat domains containing pr... 72 3e-10 ref|XP_002522710.1| conserved hypothetical protein [Ricinus comm... 71 7e-10 ref|XP_002865315.1| F-box family protein [Arabidopsis lyrata sub... 67 8e-09 >ref|XP_002319944.1| f-box family protein [Populus trichocarpa] gi|222858320|gb|EEE95867.1| f-box family protein [Populus trichocarpa] Length = 511 Score = 81.6 bits (200), Expect = 4e-13 Identities = 98/348 (28%), Positives = 158/348 (45%), Gaps = 30/348 (8%) Frame = +3 Query: 3 NVQEIHLKLSS----ELPQCIFNWKSLRVLKLKG-VDGFLWLRNP-HSVDLPLLKSLHLT 164 NVQE+ +++++ P+ + +SLRVLKL+ GF L + ++ P L +L L+ Sbjct: 133 NVQELDVEVATGDYFNFPRGVITSESLRVLKLRSRYPGFRLLPSSVMTIGFPSLHTLSLS 192 Query: 165 RVVL-DMTLVNDCL--SKCPALEVLSLKCCEFMH--------LEDLIVSSP-QLKKLVII 308 V+L + + + D S P L+ L+L C M LEDL + + QL L I Sbjct: 193 LVILYEQSSLLDLFTESSFPCLKNLNLDACFGMKHLKVCCRALEDLTIENCFQLHSLDIC 252 Query: 309 TYDQNY----GCFKHYDTKIW----APKLTFLKVR-DYISKRFSLDNLSSLESAVIDLKV 461 + CF Y K W AP+L + + I+ SL NL+SL A + + Sbjct: 253 SAKLENLRVASCFDAYSDKTWFKVNAPRLRGISWEYNSITASSSLVNLTSLHEASVGFSL 312 Query: 462 NEHFVPLGTKQENAKRVIQVLEGLCHXXXXXXXXXXXXMFSSALKIQRMSSQFSNLRHFK 641 + + E + V L GL H + S+ I + F+NL+ + Sbjct: 313 LHENLSV----EKLQSVCNFLSGLSHVHSLTLDSQCVEILSNKNDIINLLHPFNNLKVLE 368 Query: 642 LTSS--PNDACDLLQLLMDSPNIKTLLLKMTWTNFNSYQGRLYWDEPSFYSTIMEANWEE 815 L + N+ L L SP + TL+LK+ +F + + + D ++ E WE Sbjct: 369 LHTGFEKNNVPGLAFLFRSSPTLHTLILKII-NDFKTERRQWNRDLWDLSTSAEEQYWES 427 Query: 816 WLQ-FQCLLEHLESVEIRNFLGCENEVRLLIVLLQKATALRKIKIVLA 956 LQ + L+HL+ V+I FL CENEV L LL+ L+++ + A Sbjct: 428 QLQALRPFLDHLKVVKIHGFLECENEVSLAKFLLKHGKDLQEMTLCTA 475 >ref|XP_002276216.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220-like [Vitis vinifera] Length = 513 Score = 78.6 bits (192), Expect = 4e-12 Identities = 96/356 (26%), Positives = 159/356 (44%), Gaps = 43/356 (12%) Frame = +3 Query: 3 NVQEIHLKLSSE----LPQCIFNWKSLRVLKLK-GVDGFLWLRNPHSVDL----PLLKSL 155 NVQ++ + + ++ LP+C+ +SL+ L LK GF R P S+ + L++L Sbjct: 137 NVQDLDIDVCTDDYFNLPRCVVMSESLKALSLKFRPPGF---RLPPSMVMRGGFQSLQTL 193 Query: 156 HLTRVV-------LDM-------TLVNDCLSKCPALEVLSLKCCEFM--------HLEDL 269 L+ +V LD+ L L C ++ L + C L L Sbjct: 194 SLSHMVFYKKHYLLDLFAGSAFPVLRKLTLDSCRGIKFLDVGCRVLQDLTVENCFQLHGL 253 Query: 270 IVSSPQLKKLVIITYDQNYGCFKHYDTKIW----APKLTFLK-VRDYISKRFSLDNLSSL 434 VS P+L++L +++ CF+ K W AP+L + + I++ L+NL+S+ Sbjct: 254 TVSGPRLERLRVVS------CFESSSEKSWVKIIAPRLRVMHWEHNAITETSCLENLASM 307 Query: 435 ESAVIDLKVNEHFVPLGTKQENAKRVIQVLEGLCHXXXXXXXXXXXXMFSSALKIQRMSS 614 E A I + T+ E K V +L GL H + S+ Sbjct: 308 EEAFIGFFALDE----DTRAEKYKSVSNILSGLSHAHCLTLQSQCIQILSNNHYSTISLH 363 Query: 615 QFSNLRHFKLTS--SPNDACDLLQLLMDSPNIKTLLLKMTWTNFNSYQGRLY----WDEP 776 F NL+ KL + N+ LL L SP + TL+LK+ T+F + + + + WD Sbjct: 364 PFHNLKTMKLHTVLDKNNIRGLLCLFRSSPTLHTLILKII-THFKAEKTKAWNKALWDHM 422 Query: 777 SFYSTIMEANWEEWLQ-FQCLLEHLESVEIRNFLGCENEVRLLIVLLQKATALRKI 941 S S+ E WE Q F+ L+HL+ V + + ENE+ L+ LL+ AL+++ Sbjct: 423 S--SSEQEQYWESRSQTFKSFLQHLKVVRMEGLVESENEIGLIKFLLKHGMALQEM 476 >ref|NP_173374.1| FBD / Leucine Rich Repeat domains containing protein [Arabidopsis thaliana] gi|332191729|gb|AEE29850.1| FBD / Leucine Rich Repeat domains containing protein [Arabidopsis thaliana] Length = 435 Score = 72.0 bits (175), Expect = 3e-10 Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 15/233 (6%) Frame = +3 Query: 66 SLRVLKLKGV----DGFLWLRNPHSVDLPLLKSLHLTRVV-LDMTLVNDCLSKCPALEVL 230 SL+ L L+GV + F L H+V P LKSLHL V+ D + L+ CP LE L Sbjct: 125 SLKNLLLQGVRYVDESFQLLDESHTVCFPSLKSLHLKEVISSDERYLRSLLANCPVLEEL 184 Query: 231 SLKCCEFMHLEDLIVSSPQLKKLVI-ITYDQNYGCFKHYDTKIWAPKLTFLKVRDYISKR 407 ++ E+ L + + P LK L + I D++ +I AP L ++K+ D+ + Sbjct: 185 VMELDEYDTLGAVHIIVPSLKSLSLDIDCDRSSNV-----VEIVAPSLEYIKLNDHSDNK 239 Query: 408 FSLDNLSSLESAVIDLKVNEH--FVPLGTKQENAKRVIQVLEGLCHXXXXXXXXXXXXMF 581 F ++N+ LE A ID + E+ F+ T + + ++ G Sbjct: 240 FLIENMPKLEEAYIDANIFEYEKFLGAFTSVKRLRASPSIVSGRISGDG----------L 289 Query: 582 SSALKIQRMSSQ------FSNLRHFKL-TSSPNDACDLLQLLMDSPNIKTLLL 719 + L +QR ++ F+ L K+ T P + LL+LL SPN+K L L Sbjct: 290 NLCLMLQRSEARNVSAICFNQLESLKICTCKPYWSIILLRLLKGSPNLKVLEL 342 >ref|XP_002522710.1| conserved hypothetical protein [Ricinus communis] gi|223538060|gb|EEF39672.1| conserved hypothetical protein [Ricinus communis] Length = 501 Score = 70.9 bits (172), Expect = 7e-10 Identities = 101/356 (28%), Positives = 155/356 (43%), Gaps = 37/356 (10%) Frame = +3 Query: 3 NVQEIHLKLSSE----LPQCIFNWKSLRVLKLKGV-DGFLWLRNPHSVD-LPLLKSLHLT 164 NVQE+ +++++E P+ + K+LRVLKLK + GF L + D L+ L L+ Sbjct: 143 NVQELDVEVATEDHFNFPRGVITSKTLRVLKLKSMYPGFRLLPSSVMTDGFRSLQVLSLS 202 Query: 165 RVVL-DMTLVNDCL--SKCPALEVLSLKCCEFMHLEDLIVSSPQLKKLVIITYDQNYG-- 329 V+L D + + D S P L+ L+L C L+ L +S L+ L + Q +G Sbjct: 203 LVILYDQSSLLDLFTESSFPRLKKLNLDAC--FGLKHLKISCRGLEDLTLENCFQLHGLE 260 Query: 330 -------------CFKHYDTKIWAPKLTFLKVR------DYISKRFSLDNLSSLESAVID 452 CF Y K W K+ +R + I+ SL+NL+SL A + Sbjct: 261 ICCGKLDKLRVASCFDAYYEKSWV-KINSPNLRIVFWECNAITGTSSLENLTSLREASVG 319 Query: 453 LKVNEHFVPLGTKQENAKRVIQVLEGLCHXXXXXXXXXXXXMFSSALKIQRMSSQFSNLR 632 + V E + V +L GL S+A + S SNL+ Sbjct: 320 FFLLHEDV----SAEKLQSVWDLLSGL----------------SNAYSLTLESDVLSNLK 359 Query: 633 HFKLTSSPN--DACDLLQLLMDSPNIKTLLLKMTWTNFNSYQGRLY----WDEPSFYSTI 794 KL + N + L L SP + TL+LK+ N + R + WD +T Sbjct: 360 ILKLETGFNKSNVPGLASLFRSSPALHTLVLKII--NDCKIERRQWNRDLWD---MSTTK 414 Query: 795 MEANWEEWLQ-FQCLLEHLESVEIRNFLGCENEVRLLIVLLQKATALRKIKIVLAQ 959 E WE + + L HL+ V+I FL CENEV L LL+ L+++ + A+ Sbjct: 415 EEQFWESQIHTLKPFLSHLKVVKIHGFLECENEVSLAKFLLKHGKCLQEMTLCTAR 470 >ref|XP_002865315.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297311150|gb|EFH41574.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Length = 441 Score = 67.4 bits (163), Expect = 8e-09 Identities = 88/314 (28%), Positives = 130/314 (41%), Gaps = 11/314 (3%) Frame = +3 Query: 39 LPQCIFNWKSLRVLKLKGVDGFLWLRNPHSV-DLPLLKSLHLTRVVLDMTLVNDCLSKCP 215 +P IF K+L LKL V L NP V LP LK +HL + +V LS CP Sbjct: 126 MPSNIFKSKTLVSLKLVNVG----LDNPKFVVSLPCLKIMHLEDIFYSPLIVEKLLSSCP 181 Query: 216 ALEVLSLKCCEFMHLEDLIVSSPQLKKLVIITYDQNYGCFKHYDTKIWAPKLTFLKVRDY 395 LE L++ L+V S LK +T+D G + +I AP L ++ RD Sbjct: 182 VLEDLTIVRNHEDFFNFLLVRSQTLKTF-RLTFDWEMGS-TDFSVEIDAPGLKYMSFRDS 239 Query: 396 ISKRFSLDNLSSLESAVIDLKVNEHF---VPLGTKQENAKRVIQ-VLEGLCHXXXXXXXX 563 S R + NLSSL +D + N F PL + + +I+ L G+ Sbjct: 240 QSDRIVVKNLSSLVKIDLDTEFNLKFGLGSPLEPEDLTKRDIIRDFLTGISSVKHMIISH 299 Query: 564 XXXXMFSSALKIQRMSSQFSNLRHFKLTSSPNDACDLLQLLMD----SPNIKTLLLKMTW 731 + K+ + +F NL H + S LL LL D PN+K L+L Sbjct: 300 PTLEVLYRYSKLGPL-PKFHNLYHLRAAFSSL----LLPLLSDFLEICPNLKNLILD--- 351 Query: 732 TNFNSYQGRLYWDEPSFYSTIMEANWEEWLQF-QCLLEHLESVEIRNF-LGCENEVRLLI 905 YS E ++ QCL+ LE VEI+ + E ++L+ Sbjct: 352 -----------------YSVSAEPEQIDFTNVPQCLILTLEYVEIKELTMREETGIKLVN 394 Query: 906 VLLQKATALRKIKI 947 L+ + L+K+ + Sbjct: 395 YFLENSAVLKKLTL 408