BLASTX nr result

ID: Coptis24_contig00022658 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022658
         (357 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283740.1| PREDICTED: LRR receptor-like serine/threonin...   128   6e-28
emb|CAN75789.1| hypothetical protein VITISV_041017 [Vitis vinifera]   128   6e-28
emb|CBI16545.3| unnamed protein product [Vitis vinifera]              122   4e-26
ref|XP_002297619.1| predicted protein [Populus trichocarpa] gi|2...   120   1e-25
ref|XP_002523410.1| serine-threonine protein kinase, plant-type,...   119   3e-25

>ref|XP_002283740.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1
           [Vitis vinifera]
          Length = 814

 Score =  128 bits (321), Expect = 6e-28
 Identities = 62/94 (65%), Positives = 75/94 (79%)
 Frame = +3

Query: 3   RNIGDTTSVMILMLASNNFSGPIPKTISKIYRLLLLDLSQNQFSGNTFPSFGPGALLAYV 182
           +NIGD   +MILMLA NNFSGPIP++IS+IYRLLLLDLS N+FSG TFP F P   LA++
Sbjct: 415 KNIGDAGGLMILMLAENNFSGPIPQSISQIYRLLLLDLSSNRFSGKTFPIFDPEGFLAFI 474

Query: 183 DVSSNRLSGEVPVNFALGTKILALGQNEFSGPLP 284
           D SSN  SGE+P++F+  T ILALG N+FSG LP
Sbjct: 475 DFSSNEFSGEIPMSFSQETMILALGGNKFSGSLP 508


>emb|CAN75789.1| hypothetical protein VITISV_041017 [Vitis vinifera]
          Length = 793

 Score =  128 bits (321), Expect = 6e-28
 Identities = 62/94 (65%), Positives = 75/94 (79%)
 Frame = +3

Query: 3   RNIGDTTSVMILMLASNNFSGPIPKTISKIYRLLLLDLSQNQFSGNTFPSFGPGALLAYV 182
           +NIGD   +MILMLA NNFSGPIP++IS+IYRLLLLDLS N+FSG TFP F P   LA++
Sbjct: 415 KNIGDAGGLMILMLAENNFSGPIPQSISQIYRLLLLDLSSNRFSGKTFPIFDPEGFLAFI 474

Query: 183 DVSSNRLSGEVPVNFALGTKILALGQNEFSGPLP 284
           D SSN  SGE+P++F+  T ILALG N+FSG LP
Sbjct: 475 DFSSNEFSGEIPMSFSQETMILALGGNKFSGSLP 508


>emb|CBI16545.3| unnamed protein product [Vitis vinifera]
          Length = 1252

 Score =  122 bits (305), Expect = 4e-26
 Identities = 62/94 (65%), Positives = 74/94 (78%)
 Frame = +3

Query: 3   RNIGDTTSVMILMLASNNFSGPIPKTISKIYRLLLLDLSQNQFSGNTFPSFGPGALLAYV 182
           +NIGD  S+ ILMLA NNFSGPIP + S+I  L +LDLS+N+FSGNTFP F P  LL+YV
Sbjct: 328 KNIGDANSLSILMLAGNNFSGPIPPSTSQIPNLQVLDLSRNRFSGNTFPVFDPQGLLSYV 387

Query: 183 DVSSNRLSGEVPVNFALGTKILALGQNEFSGPLP 284
           D SSN+LSGEVP  F+  T+ILALG N+FSG LP
Sbjct: 388 DFSSNQLSGEVPTAFSQYTEILALGGNKFSGGLP 421



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
 Frame = +3

Query: 6    NIGDTTSVMILMLASNNFSGPIPKTISKIYRLLLLDLSQNQFSGNTFPSFGPGALLAYVD 185
            NIG+ +++ IL+L +N+ +G IP+ IS    +  LDLS+N+  G +FP +     +  + 
Sbjct: 888  NIGNLSNLSILILRNNSLTGEIPEWISTQKTVNFLDLSKNELQG-SFPQWLAEIKVESMI 946

Query: 186  VSSNRLSGEVPVNFALGTK--ILALGQNEFSGPLP 284
            +S N+LSG +P      ++  +LAL +N FSG LP
Sbjct: 947  LSDNKLSGSLPPALFQSSRLFVLALSRNNFSGELP 981



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
 Frame = +3

Query: 6    NIGDTTSVMILMLASNNFSGPIPKTISKIYRLLLLD-LSQNQFSGNTFPSFGPGALLAYV 182
            NIGD  ++ ILML  NNFSGPIP++IS+   LL L    +N+FSG    +      L  +
Sbjct: 983  NIGDAKTLYILMLDRNNFSGPIPQSISQNSNLLTLKYCCRNKFSGALPLNLTKLRNLQRL 1042

Query: 183  DVSSNRLSGEVPVNFAL---GTKILALGQNEFSGPLPQAAKILR 305
            ++  N +SGE+P NF       ++L L  N   G +P+    L+
Sbjct: 1043 ELQDNYISGELP-NFLFHISHLQVLILRNNSLQGLIPKTISNLK 1085



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
 Frame = +3

Query: 27   VMILMLASNNFSGPIPKTISKIYRLLLLDLSQNQFSGNTFPSFGPGALLAYVDVSSNRLS 206
            + +L+L +N+  G IPKTIS +  L +LDLS N  +G   P      +   +D+S+N+LS
Sbjct: 1063 LQVLILRNNSLQGLIPKTISNLKYLQILDLSSNNLTGE-IPIGHNIDMYFLLDLSNNQLS 1121

Query: 207  GEVPVNFA--LGTKILALGQNEFSGPLP 284
            GE+P +       K+L L  N+ SG +P
Sbjct: 1122 GEIPASLGGLKALKMLNLSYNKLSGKIP 1149


>ref|XP_002297619.1| predicted protein [Populus trichocarpa] gi|222844877|gb|EEE82424.1|
           predicted protein [Populus trichocarpa]
          Length = 805

 Score =  120 bits (301), Expect = 1e-25
 Identities = 62/93 (66%), Positives = 72/93 (77%)
 Frame = +3

Query: 6   NIGDTTSVMILMLASNNFSGPIPKTISKIYRLLLLDLSQNQFSGNTFPSFGPGALLAYVD 185
           NIGD   VMIL+ + NNFSG IPK+ISKIYRLLLLDLS N+FSGN  P F P ALLAY+D
Sbjct: 413 NIGDAIKVMILVFSGNNFSGQIPKSISKIYRLLLLDLSGNRFSGN-IPDFRPNALLAYID 471

Query: 186 VSSNRLSGEVPVNFALGTKILALGQNEFSGPLP 284
            S N  SGE+PV F+  T+IL+LG+N FSG LP
Sbjct: 472 FSYNEFSGEIPVIFSQETRILSLGKNMFSGKLP 504


>ref|XP_002523410.1| serine-threonine protein kinase, plant-type, putative [Ricinus
           communis] gi|223537360|gb|EEF38989.1| serine-threonine
           protein kinase, plant-type, putative [Ricinus communis]
          Length = 816

 Score =  119 bits (297), Expect = 3e-25
 Identities = 60/94 (63%), Positives = 75/94 (79%)
 Frame = +3

Query: 6   NIGDTTSVMILMLASNNFSGPIPKTISKIYRLLLLDLSQNQFSGNTFPSFGPGALLAYVD 185
           NIG+  ++++LMLA NNFSG IP +IS+IYRL+LLDLS N+FSGN  P+F P ALLAY+D
Sbjct: 421 NIGNANAIIVLMLAKNNFSGQIPGSISEIYRLILLDLSGNRFSGN-IPAFKPDALLAYID 479

Query: 186 VSSNRLSGEVPVNFALGTKILALGQNEFSGPLPQ 287
            SSN  SGEVPV F+  T IL+LG N+FSG LP+
Sbjct: 480 FSSNEFSGEVPVTFSEETIILSLGNNKFSGSLPR 513


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