BLASTX nr result
ID: Coptis24_contig00022655
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00022655 (202 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAY89340.1| RNA polymerase II second largest subunit [Berberi... 120 2e-25 gb|AAY89339.1| RNA polymerase II second largest subunit [Berberi... 120 2e-25 emb|CAD90164.1| DNA-directed RNA polymerase II largest subunit [... 119 3e-25 gb|AAB94062.1| RPB140 [Aristolochia gigantea] 118 4e-25 gb|AAC08937.1| RPB140 [Chloranthus spicatus] 118 4e-25 >gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri] Length = 873 Score = 120 bits (300), Expect = 2e-25 Identities = 60/61 (98%), Positives = 60/61 (98%), Gaps = 1/61 (1%) Frame = -1 Query: 181 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE-KMGTL 5 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE KMGTL Sbjct: 668 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 727 Query: 4 V 2 V Sbjct: 728 V 728 >gb|AAY89339.1| RNA polymerase II second largest subunit [Berberidopsis corallina] Length = 853 Score = 120 bits (300), Expect = 2e-25 Identities = 60/61 (98%), Positives = 60/61 (98%), Gaps = 1/61 (1%) Frame = -1 Query: 181 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE-KMGTL 5 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE KMGTL Sbjct: 648 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 707 Query: 4 V 2 V Sbjct: 708 V 708 >emb|CAD90164.1| DNA-directed RNA polymerase II largest subunit [Mimulus guttatus] Length = 348 Score = 119 bits (297), Expect = 3e-25 Identities = 59/61 (96%), Positives = 60/61 (98%), Gaps = 1/61 (1%) Frame = -1 Query: 181 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE-KMGTL 5 EHLHFRQLPAGINAIV+ITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE KMGTL Sbjct: 257 EHLHFRQLPAGINAIVSITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 316 Query: 4 V 2 V Sbjct: 317 V 317 >gb|AAB94062.1| RPB140 [Aristolochia gigantea] Length = 555 Score = 118 bits (296), Expect = 4e-25 Identities = 59/62 (95%), Positives = 60/62 (96%), Gaps = 1/62 (1%) Frame = -1 Query: 184 SEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK-MGT 8 +EHLHFRQLPAGINAIVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK MGT Sbjct: 262 TEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGT 321 Query: 7 LV 2 LV Sbjct: 322 LV 323 >gb|AAC08937.1| RPB140 [Chloranthus spicatus] Length = 533 Score = 118 bits (296), Expect = 4e-25 Identities = 59/61 (96%), Positives = 60/61 (98%), Gaps = 1/61 (1%) Frame = -1 Query: 181 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE-KMGTL 5 EHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE KMGTL Sbjct: 241 EHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 300 Query: 4 V 2 V Sbjct: 301 V 301