BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022655
         (202 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY89340.1| RNA polymerase II second largest subunit [Berberi...   120   2e-25
gb|AAY89339.1| RNA polymerase II second largest subunit [Berberi...   120   2e-25
emb|CAD90164.1| DNA-directed RNA polymerase II largest subunit [...   119   3e-25
gb|AAB94062.1| RPB140 [Aristolochia gigantea]                         118   4e-25
gb|AAC08937.1| RPB140 [Chloranthus spicatus]                          118   4e-25

>gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
          Length = 873

 Score =  120 bits (300), Expect = 2e-25
 Identities = 60/61 (98%), Positives = 60/61 (98%), Gaps = 1/61 (1%)
 Frame = -1

Query: 181 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE-KMGTL 5
           EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE KMGTL
Sbjct: 668 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 727

Query: 4   V 2
           V
Sbjct: 728 V 728


>gb|AAY89339.1| RNA polymerase II second largest subunit [Berberidopsis corallina]
          Length = 853

 Score =  120 bits (300), Expect = 2e-25
 Identities = 60/61 (98%), Positives = 60/61 (98%), Gaps = 1/61 (1%)
 Frame = -1

Query: 181 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE-KMGTL 5
           EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE KMGTL
Sbjct: 648 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 707

Query: 4   V 2
           V
Sbjct: 708 V 708


>emb|CAD90164.1| DNA-directed RNA polymerase II largest subunit [Mimulus guttatus]
          Length = 348

 Score =  119 bits (297), Expect = 3e-25
 Identities = 59/61 (96%), Positives = 60/61 (98%), Gaps = 1/61 (1%)
 Frame = -1

Query: 181 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE-KMGTL 5
           EHLHFRQLPAGINAIV+ITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE KMGTL
Sbjct: 257 EHLHFRQLPAGINAIVSITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 316

Query: 4   V 2
           V
Sbjct: 317 V 317


>gb|AAB94062.1| RPB140 [Aristolochia gigantea]
          Length = 555

 Score =  118 bits (296), Expect = 4e-25
 Identities = 59/62 (95%), Positives = 60/62 (96%), Gaps = 1/62 (1%)
 Frame = -1

Query: 184 SEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK-MGT 8
           +EHLHFRQLPAGINAIVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK MGT
Sbjct: 262 TEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGT 321

Query: 7   LV 2
           LV
Sbjct: 322 LV 323


>gb|AAC08937.1| RPB140 [Chloranthus spicatus]
          Length = 533

 Score =  118 bits (296), Expect = 4e-25
 Identities = 59/61 (96%), Positives = 60/61 (98%), Gaps = 1/61 (1%)
 Frame = -1

Query: 181 EHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE-KMGTL 5
           EHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE KMGTL
Sbjct: 241 EHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 300

Query: 4   V 2
           V
Sbjct: 301 V 301