BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022646
         (978 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI18867.3| unnamed protein product [Vitis vinifera]               74   5e-11
ref|XP_002284840.1| PREDICTED: pentatricopeptide repeat-containi...    74   5e-11
ref|XP_002299265.1| predicted protein [Populus trichocarpa] gi|2...    71   5e-10
ref|XP_002527312.1| pentatricopeptide repeat-containing protein,...    65   2e-08
ref|XP_004161905.1| PREDICTED: pentatricopeptide repeat-containi...    65   2e-08

>emb|CBI18867.3| unnamed protein product [Vitis vinifera]
          Length = 804

 Score = 73.9 bits (180), Expect = 5e-11
 Identities = 33/59 (55%), Positives = 41/59 (69%)
 Frame = -3

Query: 724 TFKPDDFIHILNYCATSPDTWFFMETWRIMEEKEREMDTRCYRSIIQALTKGGYFPETF 548
           + + DDFI+IL +C+ SPD  F ME WRIM+EKE  ++ RCY   IQAL KGGY  E F
Sbjct: 89  SLRADDFIYILEHCSKSPDPLFVMEIWRIMDEKEVHVNNRCYMLSIQALCKGGYLEEAF 147


>ref|XP_002284840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g76280-like [Vitis vinifera]
          Length = 728

 Score = 73.9 bits (180), Expect = 5e-11
 Identities = 33/59 (55%), Positives = 41/59 (69%)
 Frame = -3

Query: 724 TFKPDDFIHILNYCATSPDTWFFMETWRIMEEKEREMDTRCYRSIIQALTKGGYFPETF 548
           + + DDFI+IL +C+ SPD  F ME WRIM+EKE  ++ RCY   IQAL KGGY  E F
Sbjct: 53  SLRADDFIYILEHCSKSPDPLFVMEIWRIMDEKEVHVNNRCYMLSIQALCKGGYLEEAF 111


>ref|XP_002299265.1| predicted protein [Populus trichocarpa] gi|222846523|gb|EEE84070.1|
           predicted protein [Populus trichocarpa]
          Length = 705

 Score = 70.9 bits (172), Expect = 5e-10
 Identities = 31/57 (54%), Positives = 41/57 (71%)
 Frame = -3

Query: 724 TFKPDDFIHILNYCATSPDTWFFMETWRIMEEKEREMDTRCYRSIIQALTKGGYFPE 554
           + KP +F+ IL YCA SPD    +ETW+IMEEKE  +D++CY  +I+AL KGGY  E
Sbjct: 27  SLKPHNFVPILQYCARSPDPLLVLETWQIMEEKEVGLDSKCYLLMIRALCKGGYLEE 83


>ref|XP_002527312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533312|gb|EEF35064.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 802

 Score = 65.5 bits (158), Expect = 2e-08
 Identities = 30/57 (52%), Positives = 38/57 (66%)
 Frame = -3

Query: 718 KPDDFIHILNYCATSPDTWFFMETWRIMEEKEREMDTRCYRSIIQALTKGGYFPETF 548
           +P+DF+ IL YCA SPD  F METWRIMEEKE   +      +++AL KGGY  E +
Sbjct: 91  RPNDFVDILRYCARSPDPLFAMETWRIMEEKEIGFNNISCLLMVRALCKGGYLEEAY 147


>ref|XP_004161905.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g76280-like [Cucumis sativus]
          Length = 806

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 29/55 (52%), Positives = 38/55 (69%)
 Frame = -3

Query: 712 DDFIHILNYCATSPDTWFFMETWRIMEEKEREMDTRCYRSIIQALTKGGYFPETF 548
           D+F+ IL+YCA SPD  F METW+IMEE+   ++  C   +I+AL KGGY  E F
Sbjct: 105 DNFVRILSYCAKSPDPLFVMETWKIMEERGIFLNNTCSLLMIEALCKGGYLDEAF 159