BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022624
         (557 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containi...   158   6e-37
ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containi...   158   6e-37
ref|XP_002518234.1| pentatricopeptide repeat-containing protein,...   148   5e-34
ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containi...   146   2e-33
ref|NP_001078759.1| pentatricopeptide repeat-containing protein ...   130   2e-28

>ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Cucumis sativus]
          Length = 1061

 Score =  158 bits (399), Expect = 6e-37
 Identities = 79/172 (45%), Positives = 114/172 (66%), Gaps = 2/172 (1%)
 Frame = -3

Query: 510 SYTSSQN-LSKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYLFSQMNANNIKG 334
           S+T S N  S +  LQ LLKSGF+PTLK++NHF  FL  +   +++++ F Q+NAN IKG
Sbjct: 15  SFTFSSNPSSNSRCLQTLLKSGFSPTLKSINHFFRFLYHNRRFDYVIHFFYQLNANQIKG 74

Query: 333 NSQTHSIITRTLVKANRYEEAEHFM-TQMLKDGHFPQKGICDSLIQGLISPGESPERAFS 157
           NS+TH I++  L+K+++Y++ E  + TQML    F +  + + LI+G+    E P +A  
Sbjct: 75  NSKTHLILSWALLKSHKYDDLEQILKTQMLVSSIFHRNRLWNLLIRGICVNKEDPGKALW 134

Query: 156 VLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFDN 1
           VLQ C +   + PS FTFC+L+H F   G MD+ +E+LELMS EN  YPFDN
Sbjct: 135 VLQDCFRNHAILPSSFTFCVLIHKFCSLGMMDKAVEILELMSDENVNYPFDN 186


>ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Cucumis sativus]
          Length = 1085

 Score =  158 bits (399), Expect = 6e-37
 Identities = 79/172 (45%), Positives = 114/172 (66%), Gaps = 2/172 (1%)
 Frame = -3

Query: 510 SYTSSQN-LSKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYLFSQMNANNIKG 334
           S+T S N  S +  LQ LLKSGF+PTLK++NHF  FL  +   +++++ F Q+NAN IKG
Sbjct: 15  SFTFSSNPSSNSRCLQTLLKSGFSPTLKSINHFFRFLYHNRRFDYVIHFFYQLNANQIKG 74

Query: 333 NSQTHSIITRTLVKANRYEEAEHFM-TQMLKDGHFPQKGICDSLIQGLISPGESPERAFS 157
           NS+TH I++  L+K+++Y++ E  + TQML    F +  + + LI+G+    E P +A  
Sbjct: 75  NSKTHLILSWALLKSHKYDDLEQILKTQMLVSSIFHRNRLWNLLIRGICVNKEDPGKALW 134

Query: 156 VLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFDN 1
           VLQ C +   + PS FTFC+L+H F   G MD+ +E+LELMS EN  YPFDN
Sbjct: 135 VLQDCFRNHAILPSSFTFCVLIHKFCSLGMMDKAVEILELMSDENVNYPFDN 186


>ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542581|gb|EEF44120.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 932

 Score =  148 bits (374), Expect = 5e-34
 Identities = 80/181 (44%), Positives = 107/181 (59%), Gaps = 2/181 (1%)
 Frame = -3

Query: 537 SKTLSTSAISYTSSQNLSKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYLFSQ 358
           S +++T  +S   S   S + S+QNLLK GFTPTLK++N +L FL K +    + +  SQ
Sbjct: 4   STSVTTIKLSRYFSSFSSASSSIQNLLKRGFTPTLKSINQYLLFLVKIHKFTLVPHFLSQ 63

Query: 357 MNANNIKGNSQTHSIITRTLVKANRYEEAEHFMTQMLKDGHFPQKG--ICDSLIQGLISP 184
           +N N I+GN QTHS+    L+K   +EEAEHF+           KG    DSLIQ + + 
Sbjct: 64  LNQNQIEGNYQTHSLFLLALLKLKNFEEAEHFIKTHRAKSSSSSKGHKFLDSLIQAISTD 123

Query: 183 GESPERAFSVLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFD 4
            + P +A  VL  CL+  GM PS FTFC ++HSF   GNM   I+VLELM+ E   YPF 
Sbjct: 124 EKDPNKALLVLHDCLRNYGMLPSSFTFCSVIHSFVLQGNMSGAIQVLELMNDEKINYPFC 183

Query: 3   N 1
           N
Sbjct: 184 N 184


>ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Glycine max]
          Length = 1064

 Score =  146 bits (369), Expect = 2e-33
 Identities = 78/161 (48%), Positives = 105/161 (65%)
 Frame = -3

Query: 483 KTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYLFSQMNANNIKGNSQTHSIITR 304
           +TLSLQ  LK GFTPT K +N FL FL +    N + + FSQ+ +NN   N +T S++T 
Sbjct: 6   RTLSLQTSLKRGFTPTPKPINCFLLFLFRHRKFNLITHFFSQLKSNNAPTNRRTLSLLTW 65

Query: 303 TLVKANRYEEAEHFMTQMLKDGHFPQKGICDSLIQGLISPGESPERAFSVLQQCLKFRGM 124
           +L+K++++EEAE FM       H     + DSLIQGL      PE+A SVLQ+C++ RG+
Sbjct: 66  SLLKSHKFEEAEQFMHSHT---HITHSSMWDSLIQGL----HDPEKALSVLQRCVRDRGV 118

Query: 123 SPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFDN 1
            PS  TFC++VH  S  G M R IEVLELM+G+  RYPFD+
Sbjct: 119 LPSSSTFCLVVHKLSSKGLMGRAIEVLELMAGDGVRYPFDD 159


>ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g57250, mitochondrial; Flags: Precursor
           gi|332009488|gb|AED96871.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 971

 Score =  130 bits (326), Expect = 2e-28
 Identities = 66/163 (40%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
 Frame = -3

Query: 486 SKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYLFSQMNANNIKGNSQTHSIIT 307
           S   SLQ+LLKSGF+PTL +++ FL +L +    N +L  +SQ+++  I  N + +SI++
Sbjct: 9   SGLFSLQSLLKSGFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRIYSIVS 68

Query: 306 RTLVKANRYEEAEHFMT-QMLKDGHFPQKGICDSLIQGLISPGESPERAFSVLQQCLKFR 130
              +  NRYE+AE F+   + K   FP+  + DSLI G     + P +   +L+ CL+  
Sbjct: 69  WAFLNLNRYEDAEKFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKGLLILRDCLRNH 128

Query: 129 GMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRYPFDN 1
           G  PS  TFC L++ F   G MD  IEVLE+M+ +N  YPFDN
Sbjct: 129 GAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDN 171