BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022591
         (355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   159   2e-37
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             158   4e-37
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             157   8e-37
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   157   8e-37
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                155   2e-36

>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  159 bits (403), Expect = 2e-37
 Identities = 71/114 (62%), Positives = 93/114 (81%)
 Frame = +1

Query: 4    KSMSEEEHLEGLRETFGILRKYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPEQIRSL 183
            KS+  EEH+  LR+ F +L +YN+KLNP KCTFGVT+G+FLGY+VT RGIEANP+QI ++
Sbjct: 942  KSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAI 1001

Query: 184  IEMPSPQNVKEVQRLAGRVAALNRFIAKSSDKCRPLYRLLRKTPDFLWTAECEE 345
            I++PSP+N +EVQRL GR+AALNRFI++S+DKC P Y+LLR    F W  +CEE
Sbjct: 1002 IDLPSPRNTREVQRLIGRIAALNRFISRSTDKCLPFYQLLRANKRFEWDEKCEE 1055


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  158 bits (400), Expect = 4e-37
 Identities = 70/117 (59%), Positives = 94/117 (80%)
 Frame = +1

Query: 4    KSMSEEEHLEGLRETFGILRKYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPEQIRSL 183
            KS+  E+H+E L + F +L  Y +KLNP KCTFGVT+G+FLGY+VT RGIEANP+QIR++
Sbjct: 984  KSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAI 1043

Query: 184  IEMPSPQNVKEVQRLAGRVAALNRFIAKSSDKCRPLYRLLRKTPDFLWTAECEEAFQ 354
            +E+PSP+N +EVQRL GR+AALNRFI++S+DKC P Y LL++   F W  + EEAF+
Sbjct: 1044 LELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFE 1100


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  157 bits (397), Expect = 8e-37
 Identities = 72/116 (62%), Positives = 91/116 (78%)
 Frame = +1

Query: 4   KSMSEEEHLEGLRETFGILRKYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPEQIRSL 183
           KS+ +E+H++ L E FGIL KY +KLNP KCTFGV +G+FLGYIVT RGIEAN  QI + 
Sbjct: 181 KSLKKEDHVKHLEECFGILNKYQMKLNPAKCTFGVPSGEFLGYIVTERGIEANSNQINAF 240

Query: 184 IEMPSPQNVKEVQRLAGRVAALNRFIAKSSDKCRPLYRLLRKTPDFLWTAECEEAF 351
           + MPSP+N KEVQRL GR+AALNRFI++S+DK  P Y++L+    FLW  +CEEAF
Sbjct: 241 LNMPSPRNFKEVQRLTGRIAALNRFISRSTDKSLPFYQILKGNKGFLWDEKCEEAF 296


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  157 bits (397), Expect = 8e-37
 Identities = 71/116 (61%), Positives = 92/116 (79%)
 Frame = +1

Query: 4   KSMSEEEHLEGLRETFGILRKYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPEQIRSL 183
           KS+ +E+H++ L E F IL +Y +KLNP KCTFGV +G+FLGYIVT RGIEANP QI + 
Sbjct: 624 KSLKKEDHVKHLEECFAILNQYQMKLNPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAF 683

Query: 184 IEMPSPQNVKEVQRLAGRVAALNRFIAKSSDKCRPLYRLLRKTPDFLWTAECEEAF 351
           + MPSP+N KEVQRL GR+AALNRFI++S+DK  P Y++L+   +FLW  +CEEAF
Sbjct: 684 LNMPSPKNFKEVQRLTGRIAALNRFISRSTDKSLPFYQILKGNKEFLWDEKCEEAF 739


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  155 bits (393), Expect = 2e-36
 Identities = 70/117 (59%), Positives = 92/117 (78%)
 Frame = +1

Query: 4   KSMSEEEHLEGLRETFGILRKYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPEQIRSL 183
           KS    +HL+ L ETF +LRK+ L+LN  KC+FGV +GKFLGY++THRGIE NP+QI+++
Sbjct: 253 KSKKVGDHLKDLHETFSVLRKHKLRLNASKCSFGVDSGKFLGYMITHRGIEFNPDQIKAI 312

Query: 184 IEMPSPQNVKEVQRLAGRVAALNRFIAKSSDKCRPLYRLLRKTPDFLWTAECEEAFQ 354
           +E+  P+N KEVQ+LAG  A LNRFI++S+D+CRP YRLL K  DFLWT EC  AF+
Sbjct: 313 LELHPPRNPKEVQKLAGMFAVLNRFISRSADRCRPFYRLLHKWKDFLWTDECNLAFE 369