BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022575
         (894 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                  64   2e-12
emb|CAN73734.1| hypothetical protein VITISV_032119 [Vitis vinifera]    58   3e-12
emb|CAN71692.1| hypothetical protein VITISV_015629 [Vitis vinifera]    59   2e-11
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat...    54   4e-11
emb|CAN75188.1| hypothetical protein VITISV_032368 [Vitis vinifera]    50   4e-11

>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score = 53.5 bits (127), Expect(2) = 2e-12
 Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37  LLDSLHGPKKNLKLNLRTGHHQINLRPRYE*KTTLMTKDDIYK-NARTFALSNASFTFTR 213
           +LD L G     K++LR G+HQ+ +R   E KT   TK  +Y+     F LSNA  TF R
Sbjct: 692 MLDELSGASIFSKIDLRQGYHQVRIREGDEWKTAFKTKHGLYEWLVMPFGLSNAPSTFMR 751

Query: 214 LMTEILQ 234
           LMTE+L+
Sbjct: 752 LMTEVLR 758



 Score = 45.4 bits (106), Expect(2) = 2e-12
 Identities = 19/41 (46%), Positives = 29/41 (70%)
 Frame = +2

Query: 269 SKVRDKHLQHLELILDVLHTEKLYF*LNKCYLLVDSVSFLG 391
           SK + +HL+HLE++  +L  +KLY  L KC  +V+ V+FLG
Sbjct: 776 SKTKGEHLKHLEVVFKILREQKLYGKLEKCTFMVEEVAFLG 816



 Score = 64.3 bits (155), Expect = 4e-08
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
 Frame = +3

Query: 636  WLDVSMDFVV*ILPTNERLTSISIVVDMFSKTAPFVPCKKTSDASQIAHLYF-QVLRGYL 812
            W D+SMDF+V +  T     S+ +VVD FSK A FV CKKT DA  +A L+  +++R + 
Sbjct: 1162 WEDLSMDFIVALPRTQRGKDSVMVVVDRFSKMAHFVACKKTEDAVSVAELFLKEIVRLHG 1221

Query: 813  IASYPIESPLNDVKFTSYFLKDLW 884
            +    +     D KF  YF K LW
Sbjct: 1222 VPKTIVSD--RDTKFMGYFWKTLW 1243


>emb|CAN73734.1| hypothetical protein VITISV_032119 [Vitis vinifera]
          Length = 917

 Score = 58.2 bits (139), Expect(2) = 3e-12
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +1

Query: 37  LLDSLHGPKKNLKLNLRTGHHQINLRPRYE*KTTLMTKDDIYK-NARTFALSNASFTFTR 213
           +LD + G     K++L++G+HQI LRPR E KT   TKD +Y+     F LSNA  TF R
Sbjct: 147 MLDMMAGSCIFTKIDLKSGYHQIRLRPRDEWKTAFKTKDGLYEWLVMPFGLSNAPSTFMR 206

Query: 214 LMTEILQLYRNK 249
            M ++LQ +  K
Sbjct: 207 FMNQVLQPFIGK 218



 Score = 40.0 bits (92), Expect(2) = 3e-12
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 272 KVRDKHLQHLELILDVLHTEKLYF*LNKCYLLVDSVSFLG 391
           K ++ H+ HL+ ++ +L  EKLY  L KC  +  ++ FLG
Sbjct: 232 KTKEDHVSHLQQVMRILRQEKLYINLKKCSFMTSAIMFLG 271


>emb|CAN71692.1| hypothetical protein VITISV_015629 [Vitis vinifera]
          Length = 372

 Score = 58.9 bits (141), Expect(2) = 2e-11
 Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37  LLDSLHGPKKNLKLNLRTGHHQINLRPRYE*KTTLMTKDDIYK-NARTFALSNASFTFTR 213
           +LD + G     K++LR+G+HQI +RPR E KT+  TKD++Y+     F L+NA  TF R
Sbjct: 25  MLDMMVGSVIFSKIDLRSGYHQIRIRPRDEWKTSFKTKDELYEWLVMPFGLTNAPSTFMR 84

Query: 214 LMTEILQ 234
           +MT++L+
Sbjct: 85  IMTQVLK 91



 Score = 36.6 bits (83), Expect(2) = 2e-11
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = +2

Query: 257 TYSKSKVRDKHLQHLELILDVLHTEKLYF*LNKCYLLVDSVSFLGGV 397
           TYS+S   + H +HL+ ++  L  EK Y  L KC  +  SV FLG V
Sbjct: 107 TYSRSC--EDHEEHLKQVMRTLRAEKFYINLKKCTFMSPSVVFLGFV 151


>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
          Length = 1358

 Score = 54.3 bits (129), Expect(2) = 4e-11
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +1

Query: 37  LLDSLHGPKKNLKLNLRTGHHQINLRPRYE*KTTLMTKDDIYK-NARTFALSNASFTFTR 213
           +LD LHG K   K++LR G+HQI ++   E KT   TK+ +Y+     F L+NA  TF R
Sbjct: 737 MLDELHGAKIFSKIDLRRGYHQIRMQKGDEWKTAFKTKNGLYEWLVMPFGLTNAPSTFMR 796

Query: 214 LMTEILQLYRNK 249
           LM  +L+ +  K
Sbjct: 797 LMNHVLRNFIGK 808



 Score = 40.0 bits (92), Expect(2) = 4e-11
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +2

Query: 269 SKVRDKHLQHLELILDVLHTEKLYF*LNKCYLLVDSVSFLG 391
           SK   KH+ HL+ +  VL  E+LY  L KCY  V+SV FLG
Sbjct: 821 SKDPQKHIIHLKEVFLVLRREQLYANLEKCYFGVESVVFLG 861


>emb|CAN75188.1| hypothetical protein VITISV_032368 [Vitis vinifera]
          Length = 771

 Score = 50.4 bits (119), Expect(2) = 4e-11
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +1

Query: 37  LLDSLHGPKKNLKLNLRTGHHQINLRPRYE*KTTLMTKDDIYK-NARTFALSNASFTFTR 213
           +LD LHG     K++L++G+HQI ++   E KTT  TK  +Y+     F L+NA  TF R
Sbjct: 181 MLDELHGSCVFTKIDLKSGYHQIRMKEGDEWKTTFKTKYGLYEWLVMPFGLTNAPSTFMR 240

Query: 214 LMTEILQLY 240
           LM   L+ +
Sbjct: 241 LMNHALRSF 249



 Score = 43.9 bits (102), Expect(2) = 4e-11
 Identities = 22/43 (51%), Positives = 26/43 (60%)
 Frame = +2

Query: 269 SKVRDKHLQHLELILDVLHTEKLYF*LNKCYLLVDSVSFLGGV 397
           SK  D+H+ HL  +LDVL   KLY  L KC   +D V FLG V
Sbjct: 265 SKNLDEHINHLHCVLDVLRKXKLYANLKKCSFCMDKVVFLGYV 307