BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022448
         (440 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515072.1| pentatricopeptide repeat-containing protein,...   203   1e-50
ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|2...   198   4e-49
ref|XP_003614316.1| Pentatricopeptide repeat-containing protein ...   197   7e-49
ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containi...   190   9e-47
ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containi...   188   3e-46

>ref|XP_002515072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545552|gb|EEF47056.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score =  203 bits (516), Expect = 1e-50
 Identities = 87/142 (61%), Positives = 121/142 (85%)
 Frame = -2

Query: 436 RYPKYRHNGPVYATMIDILADSGRVSEMKDLIHQMKRDSCQLRDSIFVTAITTYAKFGLL 257
           +YP YRHNGPVYATMI IL  SGR++EMK+++ QM+ DSC+ +DSIF  AI TYA+ GLL
Sbjct: 37  KYPNYRHNGPVYATMIGILGSSGRITEMKEVLDQMREDSCECKDSIFANAIKTYARVGLL 96

Query: 256 DDAVSLFRNLSRFNCVNWTQSFNTLLQIMVRESDFQTAHELYMDNSTGWEVKNQTRSINL 77
           ++A+SLF+N+ +FNCVNWT+SFNTLLQIMV+ES  + AH L++++S GWEVK++ RS+NL
Sbjct: 97  NEAISLFKNIPQFNCVNWTESFNTLLQIMVKESKLEAAHRLFLESSYGWEVKSRVRSLNL 156

Query: 76  FIEILCRNNHSDLALDIFQELN 11
            +++LC++N SD+AL +FQE+N
Sbjct: 157 LMDVLCQHNRSDVALQVFQEMN 178


>ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|222843166|gb|EEE80713.1|
           predicted protein [Populus trichocarpa]
          Length = 503

 Score =  198 bits (503), Expect = 4e-49
 Identities = 86/142 (60%), Positives = 118/142 (83%)
 Frame = -2

Query: 436 RYPKYRHNGPVYATMIDILADSGRVSEMKDLIHQMKRDSCQLRDSIFVTAITTYAKFGLL 257
           +YP Y HNGPVYATMI IL +S R++EMK++I QM+ DSC+ +DS+FVTAI TYA  G +
Sbjct: 37  KYPSYHHNGPVYATMISILGNSDRIAEMKEVIDQMRDDSCECKDSVFVTAIKTYASAGQI 96

Query: 256 DDAVSLFRNLSRFNCVNWTQSFNTLLQIMVRESDFQTAHELYMDNSTGWEVKNQTRSINL 77
            +AVSLF+N+ +FNCVNWT+SFNTLLQI+V+ES  +TAH  +++NS GWEVK++ R++NL
Sbjct: 97  SEAVSLFKNIPKFNCVNWTESFNTLLQILVKESKLETAHRFFLENSCGWEVKSRIRALNL 156

Query: 76  FIEILCRNNHSDLALDIFQELN 11
            +++LC+ N SDLAL IFQE++
Sbjct: 157 LLDVLCQRNRSDLALQIFQEMD 178


>ref|XP_003614316.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355515651|gb|AES97274.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 504

 Score =  197 bits (501), Expect = 7e-49
 Identities = 88/142 (61%), Positives = 118/142 (83%)
 Frame = -2

Query: 436 RYPKYRHNGPVYATMIDILADSGRVSEMKDLIHQMKRDSCQLRDSIFVTAITTYAKFGLL 257
           +YPKY HNGPVYATMI+IL  SGR+ EM DLI QMK DSC+ +DS+FV+AI TYAK GL+
Sbjct: 39  KYPKYSHNGPVYATMINILGTSGRLKEMSDLIEQMKEDSCECKDSVFVSAIKTYAKEGLV 98

Query: 256 DDAVSLFRNLSRFNCVNWTQSFNTLLQIMVRESDFQTAHELYMDNSTGWEVKNQTRSINL 77
           D+A+SL++N+ +FNCVNWTQSFNTLL+IMV E+  + AH L++++S GWEVK++ +++NL
Sbjct: 99  DEAISLYKNIPQFNCVNWTQSFNTLLEIMVNENKLEDAHSLFVESSCGWEVKSRVQALNL 158

Query: 76  FIEILCRNNHSDLALDIFQELN 11
            +  LCR + SDLAL IFQE++
Sbjct: 159 LMYALCRKSRSDLALQIFQEMD 180


>ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g05600-like [Glycine max]
          Length = 502

 Score =  190 bits (483), Expect = 9e-47
 Identities = 83/143 (58%), Positives = 117/143 (81%)
 Frame = -2

Query: 439 SRYPKYRHNGPVYATMIDILADSGRVSEMKDLIHQMKRDSCQLRDSIFVTAITTYAKFGL 260
           SRYP Y HNGPVYATMI IL  SGR++EM+D+I QMK DSC+ +DS+FV+ I TYA  GL
Sbjct: 36  SRYPNYYHNGPVYATMISILGTSGRLNEMRDVIEQMKEDSCECKDSVFVSVIKTYANAGL 95

Query: 259 LDDAVSLFRNLSRFNCVNWTQSFNTLLQIMVRESDFQTAHELYMDNSTGWEVKNQTRSIN 80
           +D+A+SL++++ RFNCVNWT+SFNT+LQIMV+E+  + AH L++++S GWEV++  R++N
Sbjct: 96  VDEAISLYKSIPRFNCVNWTESFNTMLQIMVKENRLEIAHRLFVESSCGWEVRSLVRALN 155

Query: 79  LFIEILCRNNHSDLALDIFQELN 11
           L +  LC+ + SDLAL +FQE++
Sbjct: 156 LLMYALCQKSRSDLALQLFQEMD 178


>ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g05600-like [Vitis vinifera]
          Length = 503

 Score =  188 bits (478), Expect = 3e-46
 Identities = 82/146 (56%), Positives = 119/146 (81%)
 Frame = -2

Query: 439 SRYPKYRHNGPVYATMIDILADSGRVSEMKDLIHQMKRDSCQLRDSIFVTAITTYAKFGL 260
           S++P YRHNGPVYATMI++L  SGR++EM+++I QMK+DSC+ +DS+F + + TYA+ G+
Sbjct: 36  SKFPNYRHNGPVYATMINVLGSSGRIAEMREVIDQMKQDSCECKDSVFSSVMKTYARAGM 95

Query: 259 LDDAVSLFRNLSRFNCVNWTQSFNTLLQIMVRESDFQTAHELYMDNSTGWEVKNQTRSIN 80
           +D+AVSLF+ L +FNCVNWT SFNTLL+I+V+ES  +TA  L++++S GWEVK++  S+N
Sbjct: 96  VDEAVSLFKTLPQFNCVNWTGSFNTLLRILVKESKLETACRLFLEHSCGWEVKSRIGSLN 155

Query: 79  LFIEILCRNNHSDLALDIFQELNNMC 2
           L ++ LC+ N SDLAL +FQE+   C
Sbjct: 156 LLMDALCQINRSDLALHVFQEMRYQC 181