BLASTX nr result

ID: Coptis24_contig00022431 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022431
         (295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274824.1| PREDICTED: uncharacterized protein LOC100245...    85   7e-15
ref|XP_002320984.1| predicted protein [Populus trichocarpa] gi|2...    62   5e-08
ref|NP_001147023.1| long cell-linked locus protein [Zea mays] gi...    62   5e-08
ref|XP_002301497.1| predicted protein [Populus trichocarpa] gi|2...    60   1e-07
gb|ACR34783.1| unknown [Zea mays]                                      60   2e-07

>ref|XP_002274824.1| PREDICTED: uncharacterized protein LOC100245192 [Vitis vinifera]
          Length = 174

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 48/86 (55%), Positives = 60/86 (69%), Gaps = 4/86 (4%)
 Frame = -1

Query: 295 DFNGDDGDSVYH-QEVRKSYLI---EENYGCGFDEDERIHGEIVAVEDEAIDLKADEFIA 128
           +FNGDDG  V   +E RKS+L+   EE+ GCG  E+E           E ID+KA+EFIA
Sbjct: 100 EFNGDDGGEVGDGEEARKSFLMGGDEEDCGCGGCEEE-----------EGIDVKAEEFIA 148

Query: 127 NFYRQMKMQRQISYLQYDEMLDRGTN 50
            FY QMK+QRQISYLQY+EML+RGT+
Sbjct: 149 KFYAQMKLQRQISYLQYNEMLNRGTS 174


>ref|XP_002320984.1| predicted protein [Populus trichocarpa] gi|222861757|gb|EEE99299.1|
           predicted protein [Populus trichocarpa]
          Length = 186

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
 Frame = -1

Query: 295 DFNGDDGDSVYHQEVRKSYLIEENYGCGFDEDE-RIHGEIVAVEDEAIDLKADEFIANFY 119
           D + D     Y+   R+S+L++     G DE+E     E +  E+E ID++A++FIA F 
Sbjct: 108 DIHQDGSVYEYYDGTRRSFLLKS----GEDEEEYETCEEKIPAEEEGIDMRAEQFIAKFR 163

Query: 118 RQMKMQRQISYLQYDEMLDRGTN 50
           +QM++QRQISYLQY E   +GT+
Sbjct: 164 QQMRLQRQISYLQYHETPKKGTS 186


>ref|NP_001147023.1| long cell-linked locus protein [Zea mays]
           gi|195606578|gb|ACG25119.1| long cell-linked locus
           protein [Zea mays]
          Length = 205

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 14/90 (15%)
 Frame = -1

Query: 286 GDDGDSVYHQEVRKSYLIEENYGCGFDED--ERIHGEIVAV------------EDEAIDL 149
           GDD  S  H E  +    +E   CG DE   ER+  E                ED  +D+
Sbjct: 117 GDDPRSARHVEEEE----DELSCCGDDEQLLERVVAEACRASTTAGSVAGEGGEDAGVDV 172

Query: 148 KADEFIANFYRQMKMQRQISYLQYDEMLDR 59
           KA+EFIA FY QMK+QRQIS+LQY+EM++R
Sbjct: 173 KAEEFIARFYAQMKLQRQISWLQYNEMMER 202


>ref|XP_002301497.1| predicted protein [Populus trichocarpa] gi|222843223|gb|EEE80770.1|
           predicted protein [Populus trichocarpa]
          Length = 187

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 10/92 (10%)
 Frame = -1

Query: 295 DFNGD--------DGDSVY--HQEVRKSYLIEENYGCGFDEDERIHGEIVAVEDEAIDLK 146
           DF G+        DG SVY  +  +R+S+L++     G +E+     E +  E+E ID++
Sbjct: 100 DFEGEVCEDDIQQDG-SVYECYDGMRRSFLLKG----GDEEEYETCEEKIPAEEEGIDMR 154

Query: 145 ADEFIANFYRQMKMQRQISYLQYDEMLDRGTN 50
           A+EFIA F +QM++QRQISYLQY E   +GT+
Sbjct: 155 AEEFIAKFRQQMRLQRQISYLQYHETPKKGTS 186


>gb|ACR34783.1| unknown [Zea mays]
          Length = 65

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 26/37 (70%), Positives = 33/37 (89%)
 Frame = -1

Query: 169 EDEAIDLKADEFIANFYRQMKMQRQISYLQYDEMLDR 59
           ED  +D+KADEFIA FY QMK+QRQIS+LQY+EM++R
Sbjct: 26  EDAGVDVKADEFIARFYAQMKLQRQISWLQYNEMMER 62


Top