BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022424
         (313 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    70   2e-10
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    60   2e-07
ref|XP_002516681.1| conserved hypothetical protein [Ricinus comm...    59   4e-07
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    59   5e-07
ref|XP_002524702.1| nuclease, putative [Ricinus communis] gi|223...    55   8e-06

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
 Frame = -2

Query: 312  PNYGFVKANTDGSSVGNPGLGGAGIIFRDHNAQVIGVKAYGLGITTNFDAECYXXXXXXX 133
            P+   +K NTDGS VG  GL   G +FRD +   +G  +  +G+ + F AE         
Sbjct: 1018 PSPPLLKVNTDGSVVG--GLAACGGLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALE 1075

Query: 132  XXXLNGWVNLWLESDSIAATLAFT-SAKIPWVLKARW 25
                +GW NLWLESDS +A + F+ S+ + W+L+ RW
Sbjct: 1076 HAAHHGWRNLWLESDSTSALMIFSNSSLVQWLLRNRW 1112


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = -2

Query: 312 PNYGFVKANTDGSSVGNPGLGGAGIIFRDHNAQVIGVKAYGLGITTNFDAECYXXXXXXX 133
           P+ G +K N DGS VG+P  G  G+IFR       G  A  +G  T  +AE         
Sbjct: 248 PHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSACMFAIE 307

Query: 132 XXXLNGWVNLWLESDSIAATLAF-TSAKIPWVLKARW 25
                   N+W+E+DS+    AF  +  +PW +  RW
Sbjct: 308 KAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRW 344


>ref|XP_002516681.1| conserved hypothetical protein [Ricinus communis]
           gi|223544176|gb|EEF45700.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 180

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = -2

Query: 288 NTDGSSVGNPGLGGAGIIFRDHNAQVIGVKAYGLGITTNFDAECYXXXXXXXXXXLNGWV 109
           NTDGS++G  G  GAG +FR+ +  V+G  A+ LG    F  E              GW+
Sbjct: 51  NTDGSALGALGPAGAGGLFRNPSGYVMGAFAFSLGTNCAFFVELNSASFAVCKAWEVGWL 110

Query: 108 NLWLESDSIAATLAFTS--AKIPWVLKARW 25
           +LWLESDSI     F +    + W L+  W
Sbjct: 111 HLWLESDSIYVVHLFRTKGTSVLWELRLAW 140


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = -2

Query: 303 GFVKANTDGSSVGNPGLGGAGIIFRDHNAQVIGVKAYGLGITTNFDAECYXXXXXXXXXX 124
           G VK N DGS+ G P  G  G +FR+     +G  A  +G  T F AE            
Sbjct: 9   GRVKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSI 68

Query: 123 LNGWVNLWLESDSIAATLAFTSAK-IPWVLKARW 25
                ++WLE+DS     AF+S++ +PW L+ RW
Sbjct: 69  EYNLRDIWLETDSKLVVKAFSSSEHVPWQLRTRW 102


>ref|XP_002524702.1| nuclease, putative [Ricinus communis] gi|223536063|gb|EEF37721.1|
           nuclease, putative [Ricinus communis]
          Length = 201

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/76 (36%), Positives = 38/76 (50%)
 Frame = -2

Query: 312 PNYGFVKANTDGSSVGNPGLGGAGIIFRDHNAQVIGVKAYGLGITTNFDAECYXXXXXXX 133
           P  G+ K N DGS  G  G G  G +FR+H A+ +   A  +G +T+  AE         
Sbjct: 37  PQVGWTKLNFDGSCKGREGKGSIGGVFRNHKAEFLLGYAESIGRSTSTIAELAALRRGLE 96

Query: 132 XXXLNGWVNLWLESDS 85
               NGW N+WLE D+
Sbjct: 97  LVLENGWSNVWLEGDA 112