BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022355
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530894.1| pentatricopeptide repeat-containing protein,...   136   2e-30
ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containi...   131   7e-29
ref|NP_175673.1| pentatricopeptide repeat-containing protein [Ar...   124   8e-27
ref|XP_002305285.1| predicted protein [Populus trichocarpa] gi|2...   124   8e-27
ref|XP_002894392.1| pentatricopeptide repeat-containing protein ...   122   4e-26

>ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529547|gb|EEF31500.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 519

 Score =  136 bits (343), Expect = 2e-30
 Identities = 61/95 (64%), Positives = 80/95 (84%)
 Frame = -2

Query: 286 RNSHHILVDILGSSKQFPLIWNFLSDIRDGGDYEISSEMFWIVFRSYSRAGLPMDAIRAF 107
           + S+HILVDILGSSKQF L+W+FL +IR+  D+EIS ++FW+VFR+YSRA LP DAIRAF
Sbjct: 108 KESYHILVDILGSSKQFALLWDFLIEIRESQDFEISPQVFWLVFRAYSRANLPSDAIRAF 167

Query: 106 EKMHDYDLKPGVDDLDQLVFTLCKRKLVKHAQEFF 2
           ++M ++ LKP +DDLDQL++ LCKRK  KHAQ+ F
Sbjct: 168 DRMVEFGLKPTIDDLDQLLYVLCKRKHAKHAQQIF 202


>ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  131 bits (329), Expect = 7e-29
 Identities = 62/95 (65%), Positives = 77/95 (81%)
 Frame = -2

Query: 286 RNSHHILVDILGSSKQFPLIWNFLSDIRDGGDYEISSEMFWIVFRSYSRAGLPMDAIRAF 107
           + S+HILVDILGSSKQFPLIW+FLSD+R+    EI  E+FW++FR+Y RA LP DAIRAF
Sbjct: 114 KESYHILVDILGSSKQFPLIWDFLSDMRETRCCEICPEIFWLIFRAYCRANLPGDAIRAF 173

Query: 106 EKMHDYDLKPGVDDLDQLVFTLCKRKLVKHAQEFF 2
            +M D+ +K GV D+DQL++ LCKRK VK AQEFF
Sbjct: 174 HQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFF 208


>ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g52640, mitochondrial; Flags: Precursor
           gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535
           DUF domains [Arabidopsis thaliana]
           gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis
           thaliana] gi|62320530|dbj|BAD95108.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332194712|gb|AEE32833.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  124 bits (311), Expect = 8e-27
 Identities = 58/93 (62%), Positives = 76/93 (81%)
 Frame = -2

Query: 280 SHHILVDILGSSKQFPLIWNFLSDIRDGGDYEISSEMFWIVFRSYSRAGLPMDAIRAFEK 101
           S+HILV+ILGSSKQF L+W+FL + R+   +EISS++FWIVFR+YSRA LP +A RAF +
Sbjct: 104 SYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNR 163

Query: 100 MHDYDLKPGVDDLDQLVFTLCKRKLVKHAQEFF 2
           M ++ +KP VDDLDQL+ +LC +K V HAQEFF
Sbjct: 164 MVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFF 196


>ref|XP_002305285.1| predicted protein [Populus trichocarpa] gi|222848249|gb|EEE85796.1|
           predicted protein [Populus trichocarpa]
          Length = 523

 Score =  124 bits (311), Expect = 8e-27
 Identities = 55/93 (59%), Positives = 78/93 (83%)
 Frame = -2

Query: 280 SHHILVDILGSSKQFPLIWNFLSDIRDGGDYEISSEMFWIVFRSYSRAGLPMDAIRAFEK 101
           S+HILV+ILG+S+QF ++W+FL ++R+  D+EI+ E+ W+VFRSYSRA LP DAIRAF++
Sbjct: 114 SYHILVNILGTSRQFAILWDFLIEMRESHDFEINQEIIWLVFRSYSRANLPSDAIRAFDR 173

Query: 100 MHDYDLKPGVDDLDQLVFTLCKRKLVKHAQEFF 2
           M ++ L+P VDDLD+L++ LCK K VK AQ+FF
Sbjct: 174 MAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFF 206


>ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297340234|gb|EFH70651.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 525

 Score =  122 bits (305), Expect = 4e-26
 Identities = 57/93 (61%), Positives = 75/93 (80%)
 Frame = -2

Query: 280 SHHILVDILGSSKQFPLIWNFLSDIRDGGDYEISSEMFWIVFRSYSRAGLPMDAIRAFEK 101
           S+HILV+ILG SKQF L+W+FL + R+   +EI+S++FWIVFR+YSRA LP +A RAF +
Sbjct: 104 SYHILVEILGCSKQFALLWDFLIEAREYNYFEITSKVFWIVFRAYSRANLPSEASRAFNR 163

Query: 100 MHDYDLKPGVDDLDQLVFTLCKRKLVKHAQEFF 2
           M ++ +KP VDDLDQL+ +LC RK V HAQEFF
Sbjct: 164 MVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFF 196