BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022347
         (534 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containi...    99   5e-19
ref|XP_002527150.1| pentatricopeptide repeat-containing protein,...    91   1e-16
ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containi...    84   1e-14
ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containi...    84   1e-14
ref|NP_179305.2| pentatricopeptide repeat-containing protein [Ar...    70   2e-10

>ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera] gi|297744485|emb|CBI37747.3| unnamed
           protein product [Vitis vinifera]
          Length = 878

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 52/105 (49%), Positives = 68/105 (64%), Gaps = 6/105 (5%)
 Frame = +1

Query: 232 ELRKALLKQKNKPSLAWHLFKHLLTSQTPSS------LSNSIPTITHILISSKMFQQLDH 393
           +L KAL+K  + P+LAWHLFK +L+  T SS      +  SIP ITHILI +KM  Q+DH
Sbjct: 6   KLTKALIKNTHNPTLAWHLFKRILSIPTSSSSISSRSILRSIPIITHILIRAKMISQIDH 65

Query: 394 LHNLILLQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFP 528
           L  L+L QP ++S++ L  L +  AKSGL + A SQF S RS  P
Sbjct: 66  LQQLLLQQPQEVSHVSLIALIRILAKSGLSDLAFSQFQSFRSQVP 110


>ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533489|gb|EEF35232.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 874

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 53/105 (50%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
 Frame = +1

Query: 226 TMELRKALLKQKNKPSLAWHLFKHLLTSQTPSS-LSNSIPTITHILISSKMFQQLDHLHN 402
           T +L KALL   + P LAWHLFK +L+    S+  S SIP I+ ILI SKMF +LD LH 
Sbjct: 4   TTKLTKALLNNAHNPKLAWHLFKRILSLPISSNHRSQSIPIISRILIRSKMFNELDDLHQ 63

Query: 403 LILLQPP-DISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFPTR 534
           L+L  P  + S   L  L    AKSG  NKA+S F SLRS+FP +
Sbjct: 64  LLLNSPSLESSDSSLENLVTVLAKSGFFNKAISHFKSLRSNFPEK 108


>ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score = 84.3 bits (207), Expect = 1e-14
 Identities = 47/105 (44%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
 Frame = +1

Query: 232 ELRKALLKQKNKPSLAWHLFKHLLTSQTPSSLS------NSIPTITHILISSKMFQQLDH 393
           +L KA+    N P+LAW LFK +L+S  P+S S       S+P I  ILI++KM  Q+DH
Sbjct: 8   KLSKAIYLNSNNPNLAWLLFKRILSSPIPASSSFFKPSLQSVPAIARILITAKMHPQIDH 67

Query: 394 LHNLILLQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFP 528
           LH L+L Q  D ++    +L +  A  GLL  A+SQF SLR  FP
Sbjct: 68  LHQLLLSQHRDFAHPSGFSLVRTLADLGLLENAISQFRSLRDRFP 112


>ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
           gi|449472527|ref|XP_004153621.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score = 84.3 bits (207), Expect = 1e-14
 Identities = 47/105 (44%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
 Frame = +1

Query: 232 ELRKALLKQKNKPSLAWHLFKHLLTSQTPSSLS------NSIPTITHILISSKMFQQLDH 393
           +L KA+    N P+LAW LFK +L+S  P+S S       S+P I  ILI++KM  Q+DH
Sbjct: 8   KLSKAIYLNSNNPNLAWLLFKRILSSPIPASSSFFKPSLQSVPAIARILITAKMHPQIDH 67

Query: 394 LHNLILLQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFP 528
           LH L+L Q  D ++    +L +  A  GLL  A+SQF SLR  FP
Sbjct: 68  LHQLLLSQHRDFAHPSGFSLVRTLADLGLLENAISQFRSLRDRFP 112


>ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g17140 gi|110737729|dbj|BAF00803.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|330251496|gb|AEC06590.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
 Frame = +1

Query: 235 LRKALLKQKNKPSLAWHLFKHLLTSQTPSSLSNSI---PTITHILISSKMFQQLDHLHNL 405
           L KALLK  N P LAW +FK + +S +  S   S+   PTI  IL+ +KM +++  LHNL
Sbjct: 5   LVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNL 64

Query: 406 IL---LQPPDISYIYLTTLTQASAKSGLLNKALSQFDSLRSHFP 528
           IL   +Q   +S   L ++    AKS  ++KA  QF  +RS FP
Sbjct: 65  ILSSSIQKTKLS--SLLSVVSIFAKSNHIDKAFPQFQLVRSRFP 106