BLASTX nr result
ID: Coptis24_contig00022324
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00022324
(437 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245... 106 1e-46
emb|CBI34885.3| unnamed protein product [Vitis vinifera] 106 1e-46
emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera] 106 1e-46
ref|XP_002524665.1| pentatricopeptide repeat-containing protein,... 99 7e-40
ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [S... 94 2e-28
>ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 106 bits (265), Expect(2) = 1e-46
Identities = 53/86 (61%), Positives = 66/86 (76%)
Frame = +2
Query: 179 F*GLMVFRKMLNCGISPNAVTFTSVIKACIGLSDFDCGRSLLGLIVRYGFEHNVSVCNSI 358
F L +F ++L G+ PN VTFTSV++AC L DF G S+LGL+V+ GFEH +SV NS+
Sbjct: 166 FEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSL 225
Query: 359 ITLSLRMGETEVARRVFDEMEVRDVV 436
ITLSLRMGE ++ARRVFD ME RDVV
Sbjct: 226 ITLSLRMGEIDLARRVFDRMEKRDVV 251
Score = 105 bits (261), Expect(2) = 1e-46
Identities = 46/59 (77%), Positives = 56/59 (94%)
Frame = +3
Query: 9 LFDEMPERNEVSWSTLVSGLMRYGKVEESVLYFKKNPFRDVVSWTAMINGFVKNGLNFE 185
LFDEMPERNEVSWS L+SGLM+YG+VEES+ YF++NPF++VVSWTA I+GFV+NGLNFE
Sbjct: 109 LFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFE 167
Score = 50.4 bits (119), Expect(2) = 4e-11
Identities = 23/83 (27%), Positives = 49/83 (59%)
Frame = +2
Query: 188 LMVFRKMLNCGISPNAVTFTSVIKACIGLSDFDCGRSLLGLIVRYGFEHNVSVCNSIITL 367
L VF +L G +PN TF+SV+ AC ++ D G ++ G I++ G ++++ V ++ +
Sbjct: 433 LEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDM 492
Query: 368 SLRMGETEVARRVFDEMEVRDVV 436
+ G+ +++VF+ M ++ +
Sbjct: 493 YAKCGDIGSSKQVFERMPEKNEI 515
Score = 42.0 bits (97), Expect(2) = 4e-11
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +3
Query: 9 LFDEMPERNEVSWSTLVSGLMRYGKVEESVLYFKKNPFRDVVSWTAMINGFVKN 170
+FD + E+N V W+++V G G++EE+ F+ P ++ VSW +I G+++N
Sbjct: 373 VFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLEN 426
>emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 106 bits (265), Expect(2) = 1e-46
Identities = 53/86 (61%), Positives = 66/86 (76%)
Frame = +2
Query: 179 F*GLMVFRKMLNCGISPNAVTFTSVIKACIGLSDFDCGRSLLGLIVRYGFEHNVSVCNSI 358
F L +F ++L G+ PN VTFTSV++AC L DF G S+LGL+V+ GFEH +SV NS+
Sbjct: 166 FEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSL 225
Query: 359 ITLSLRMGETEVARRVFDEMEVRDVV 436
ITLSLRMGE ++ARRVFD ME RDVV
Sbjct: 226 ITLSLRMGEIDLARRVFDRMEKRDVV 251
Score = 105 bits (261), Expect(2) = 1e-46
Identities = 46/59 (77%), Positives = 56/59 (94%)
Frame = +3
Query: 9 LFDEMPERNEVSWSTLVSGLMRYGKVEESVLYFKKNPFRDVVSWTAMINGFVKNGLNFE 185
LFDEMPERNEVSWS L+SGLM+YG+VEES+ YF++NPF++VVSWTA I+GFV+NGLNFE
Sbjct: 109 LFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFE 167
Score = 50.4 bits (119), Expect(2) = 4e-11
Identities = 23/83 (27%), Positives = 49/83 (59%)
Frame = +2
Query: 188 LMVFRKMLNCGISPNAVTFTSVIKACIGLSDFDCGRSLLGLIVRYGFEHNVSVCNSIITL 367
L VF +L G +PN TF+SV+ AC ++ D G ++ G I++ G ++++ V ++ +
Sbjct: 433 LEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDM 492
Query: 368 SLRMGETEVARRVFDEMEVRDVV 436
+ G+ +++VF+ M ++ +
Sbjct: 493 YAKCGDIGSSKQVFERMPEKNEI 515
Score = 42.0 bits (97), Expect(2) = 4e-11
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +3
Query: 9 LFDEMPERNEVSWSTLVSGLMRYGKVEESVLYFKKNPFRDVVSWTAMINGFVKN 170
+FD + E+N V W+++V G G++EE+ F+ P ++ VSW +I G+++N
Sbjct: 373 VFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLEN 426
>emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 106 bits (265), Expect(2) = 1e-46
Identities = 53/86 (61%), Positives = 66/86 (76%)
Frame = +2
Query: 179 F*GLMVFRKMLNCGISPNAVTFTSVIKACIGLSDFDCGRSLLGLIVRYGFEHNVSVCNSI 358
F L +F ++L G+ PN VTFTSV++AC L DF G S+LGL+V+ GFEH +SV NS+
Sbjct: 166 FEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSL 225
Query: 359 ITLSLRMGETEVARRVFDEMEVRDVV 436
ITLSLRMGE ++ARRVFD ME RDVV
Sbjct: 226 ITLSLRMGEIDLARRVFDRMEKRDVV 251
Score = 105 bits (261), Expect(2) = 1e-46
Identities = 46/59 (77%), Positives = 56/59 (94%)
Frame = +3
Query: 9 LFDEMPERNEVSWSTLVSGLMRYGKVEESVLYFKKNPFRDVVSWTAMINGFVKNGLNFE 185
LFDEMPERNEVSWS L+SGLM+YG+VEES+ YF++NPF++VVSWTA I+GFV+NGLNFE
Sbjct: 109 LFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFE 167
Score = 50.4 bits (119), Expect(2) = 3e-10
Identities = 23/83 (27%), Positives = 49/83 (59%)
Frame = +2
Query: 188 LMVFRKMLNCGISPNAVTFTSVIKACIGLSDFDCGRSLLGLIVRYGFEHNVSVCNSIITL 367
L VF +L G +PN TF+SV+ AC ++ D G ++ G I++ G ++++ V ++ +
Sbjct: 433 LEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDM 492
Query: 368 SLRMGETEVARRVFDEMEVRDVV 436
+ G+ +++VF+ M ++ +
Sbjct: 493 YAKCGDIGSSKQVFERMPEKNEI 515
Score = 38.9 bits (89), Expect(2) = 3e-10
Identities = 17/54 (31%), Positives = 33/54 (61%)
Frame = +3
Query: 9 LFDEMPERNEVSWSTLVSGLMRYGKVEESVLYFKKNPFRDVVSWTAMINGFVKN 170
+FD + E+N V W+++V G G++EE F+ P ++ SW ++ G+++N
Sbjct: 373 VFDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLEN 426
>ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536026|gb|EEF37684.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 2000
Score = 99.4 bits (246), Expect(2) = 7e-40
Identities = 48/88 (54%), Positives = 63/88 (71%)
Frame = +2
Query: 173 FEF*GLMVFRKMLNCGISPNAVTFTSVIKACIGLSDFDCGRSLLGLIVRYGFEHNVSVCN 352
F + +F K+L + PN VTFTSV++AC L DF G S+LGLIV+ G+EH+++V N
Sbjct: 164 FSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSN 223
Query: 353 SIITLSLRMGETEVARRVFDEMEVRDVV 436
S+ITL LRMGE +AR VFD ME +DVV
Sbjct: 224 SLITLCLRMGEIHLAREVFDRMEEKDVV 251
Score = 89.7 bits (221), Expect(2) = 7e-40
Identities = 36/60 (60%), Positives = 52/60 (86%)
Frame = +3
Query: 6 RLFDEMPERNEVSWSTLVSGLMRYGKVEESVLYFKKNPFRDVVSWTAMINGFVKNGLNFE 185
+LFDEMP+ NE+SW+ L+SG M+YG+V ES+ YF++NPF++VVSWTA I+G+V+NG + E
Sbjct: 108 KLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVE 167
Score = 51.2 bits (121), Expect(2) = 2e-12
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Frame = +2
Query: 131 GFLDC--YDKWFC*KWFEF*GLMVFRKMLNCGISPNAVTFTSVIKACIGLSDFDCGRSLL 304
G LDC +D+ F VF +M+ G PN TF+S++ AC + D G++L
Sbjct: 422 GHLDCEQFDEMF----------EVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLH 471
Query: 305 GLIVRYGFEHNVSVCNSIITLSLRMGETEVARRVFDEMEVRDVV 436
G IV+ G + + V ++ + + G+ E +++VF+ M ++ V
Sbjct: 472 GKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEV 515
Score = 45.4 bits (106), Expect(2) = 2e-12
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +3
Query: 9 LFDEMPERNEVSWSTLVSGLMRYGKVEESVLYFKKNPFRDVVSWTAMING 158
LFD + E+N VSW+ +V G G +EE+ F P R+ VSW+A+I G
Sbjct: 373 LFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAG 422
Score = 51.2 bits (121), Expect(2) = 1e-10
Identities = 26/93 (27%), Positives = 50/93 (53%)
Frame = +2
Query: 158 FC*KWFEF*GLMVFRKMLNCGISPNAVTFTSVIKACIGLSDFDCGRSLLGLIVRYGFEHN 337
+C + L +F +M+ G PN F+S++ A + G ++ G + + GFE +
Sbjct: 291 YCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKD 350
Query: 338 VSVCNSIITLSLRMGETEVARRVFDEMEVRDVV 436
V V +S+I + + GET+ R +FD + +++V
Sbjct: 351 VFVSSSLIDMYCKCGETKDGRFLFDTILEKNMV 383
Score = 39.7 bits (91), Expect(2) = 1e-10
Identities = 18/55 (32%), Positives = 34/55 (61%)
Frame = +3
Query: 9 LFDEMPERNEVSWSTLVSGLMRYGKVEESVLYFKKNPFRDVVSWTAMINGFVKNG 173
+FD M E++ VSW+ ++ + ++ E+ F + P R+ VSW+AMI + ++G
Sbjct: 241 VFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSG 295
>ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
gi|241920462|gb|EER93606.1| hypothetical protein
SORBIDRAFT_01g010975 [Sorghum bicolor]
Length = 752
Score = 93.6 bits (231), Expect(2) = 2e-28
Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +2
Query: 194 VFRKMLNCGISPNAVTFTSVIKACIGLSDFDCGRSLLGLIVRYG-FEHNVSVCNSIITLS 370
VFRKML C + PN VT VIKAC+G +FD ++GL +++ FE ++ V NS+ITL
Sbjct: 238 VFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAIKWNLFEKSIEVHNSLITLY 297
Query: 371 LRMGETEVARRVFDEMEVRDVV 436
LRMG+ A RVFD+MEVRDVV
Sbjct: 298 LRMGDAAAAHRVFDDMEVRDVV 319
Score = 57.4 bits (137), Expect(2) = 2e-28
Identities = 27/58 (46%), Positives = 42/58 (72%)
Frame = +3
Query: 6 RLFDEMPERNEVSWSTLVSGLMRYGKVEESVLYFKKNPFRDVVSWTAMINGFVKNGLN 179
RLFD MPE++ VS++T+V LM+ G V+++V +++ P V +TAMI GFV+N L+
Sbjct: 175 RLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPLYSVAFFTAMIAGFVRNELH 232
Score = 43.1 bits (100), Expect(2) = 3e-07
Identities = 23/83 (27%), Positives = 44/83 (53%)
Frame = +2
Query: 188 LMVFRKMLNCGISPNAVTFTSVIKACIGLSDFDCGRSLLGLIVRYGFEHNVSVCNSIITL 367
L ++ +ML G PN F+SV+ AC L D G + ++ GF ++ V +S+I +
Sbjct: 369 LKLYSQMLAEGCRPNISCFSSVLSACATLHDLRGGTRIHANALKMGFSSSLFVSSSLIDM 428
Query: 368 SLRMGETEVARRVFDEMEVRDVV 436
+ + A+R+F+ + ++ V
Sbjct: 429 YCKCKQCTDAQRIFNSLPEKNTV 451
Score = 36.2 bits (82), Expect(2) = 3e-07
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 6 RLFDEMPERNEVSWSTLVSGLMRYGKVEESVLYFKK 113
R+ D MPERNEVSWSTL++ + G E++ + +
Sbjct: 339 RVLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQ 374
Score = 57.4 bits (137), Expect = 1e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Frame = +3
Query: 6 RLFDEMPERNEVSWSTLVSGLMRYGKVEESVLYFKKNPFRDVVSWTAMINGFVKN 170
R+F+ +PE+N V W++L+SG GK+ E+ FKK P R+ SW MI+G+ +N
Sbjct: 440 RIFNSLPEKNTVCWNSLISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAEN 494