BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022303
         (869 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309447.1| predicted protein [Populus trichocarpa] gi|1...   165   1e-38
ref|XP_002516178.1| RING-H2 finger protein ATL3J, putative [Rici...   153   4e-35
ref|XP_002874020.1| zinc finger family protein [Arabidopsis lyra...   152   1e-34
ref|NP_568404.1| RING/U-box domain-containing protein [Arabidops...   148   1e-33
ref|NP_001146854.1| RING zinc finger protein-like [Zea mays] gi|...   144   2e-32

>ref|XP_002309447.1| predicted protein [Populus trichocarpa] gi|118483893|gb|ABK93837.1|
           unknown [Populus trichocarpa]
           gi|222855423|gb|EEE92970.1| predicted protein [Populus
           trichocarpa]
          Length = 168

 Score =  165 bits (418), Expect = 1e-38
 Identities = 86/174 (49%), Positives = 103/174 (59%), Gaps = 5/174 (2%)
 Frame = -2

Query: 706 MGFSVEYSGLVLTHFLYNVTLILSLLRCVFCWVTRSMGFXXXXXXXXXXSTVPQVGLSSG 527
           MGF VE SGL++TH LY   L+L++LR    W  R                      SS 
Sbjct: 1   MGFFVEESGLIVTHLLYKAALVLAVLRWALAWALRFKNRTHLASPSNDSLRRSHPVPSS- 59

Query: 526 LTAQMIRETLDVVTYGDIMHNLPGTCDTCAVCLNELKKNDRVRELRNCCHVFHIKCIDRW 347
              Q IR+ L + T+GD+   +PG CDTCAVCL++L+  D VRELRNCCHVFH  CIDRW
Sbjct: 60  ---QQIRDGLILTTFGDVTERMPGVCDTCAVCLSQLRDQDEVRELRNCCHVFHRDCIDRW 116

Query: 346 LDHG-----DQKNCPLCRAPLLVTSCGSGLDGGWARSEPSWAVERLLYLFGDDL 200
           +DH      +   CPLCRAPLL TS          R+EPSWAVER+LYLFGDDL
Sbjct: 117 VDHDHEHDENHNTCPLCRAPLLTTSQSLAR----TRAEPSWAVERILYLFGDDL 166


>ref|XP_002516178.1| RING-H2 finger protein ATL3J, putative [Ricinus communis]
           gi|223544664|gb|EEF46180.1| RING-H2 finger protein
           ATL3J, putative [Ricinus communis]
          Length = 177

 Score =  153 bits (387), Expect = 4e-35
 Identities = 84/177 (47%), Positives = 106/177 (59%), Gaps = 8/177 (4%)
 Frame = -2

Query: 706 MGFSVEYSGLVLTHFLYNVTLILSLLRCVFCWVTR--SMGFXXXXXXXXXXSTVPQVGLS 533
           MGF VE S +++TH LY   +IL++ R    W  R  S  +           ++ Q   S
Sbjct: 1   MGFFVEDSDVIVTHLLYKAAVILAVARWALSWALRFRSRTYLSPSSSSSSNDSLHQ---S 57

Query: 532 SGL-TAQMIRETLDVVTYGDIMHNLPGTCDTCAVCLNELKKNDRVRELRNCCHVFHIKCI 356
             L ++Q IR+ L + T+GDI   + G CDTCAVCL +L + D VRELRNCCHVFH +CI
Sbjct: 58  CALPSSQQIRDGLILTTFGDITDRISGACDTCAVCLGQLSELDEVRELRNCCHVFHKECI 117

Query: 355 DRWLDH-----GDQKNCPLCRAPLLVTSCGSGLDGGWARSEPSWAVERLLYLFGDDL 200
           DRW+DH      + K CPLCRAPLL  S          + EPSWAVER+LYLFGDDL
Sbjct: 118 DRWVDHDHDHDDNHKTCPLCRAPLLTASQSLAWINN-NKCEPSWAVERILYLFGDDL 173


>ref|XP_002874020.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297319857|gb|EFH50279.1| zinc finger family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 178

 Score =  152 bits (383), Expect = 1e-34
 Identities = 84/188 (44%), Positives = 111/188 (59%), Gaps = 18/188 (9%)
 Frame = -2

Query: 706 MGFSVEYSGLVLTHFLYNVTLILSLLRCVFCWVTRSMGFXXXXXXXXXXSTVPQVGLSSG 527
           M F +E+SGL++T  LY + +++++LR +  W+ R              S+     +S  
Sbjct: 1   MSFFIEHSGLIVTQLLYKMAVLITILRWILAWILRYRS------RSRSTSSSSSPSVSPS 54

Query: 526 LTAQMIRETLDVVTYGDIMHNLPGTC-DTCAVCLNELKKNDRVRELRNCCHVFHIKCIDR 350
           +++Q I+E+L V T+ D     P    DTCAVCL +L+  D VRELRNC H+FH +CIDR
Sbjct: 55  ISSQTIKESLSVTTFRDAAERSPAMINDTCAVCLGDLEDGDEVRELRNCSHMFHRECIDR 114

Query: 349 WLDH----GDQKN---------CPLCRAPLL---VTSCGSGLDGGW-ARSEPSWAVERLL 221
           WLD+    GD  N         CPLCR PLL    TSCG      W A++EPSWAVERLL
Sbjct: 115 WLDYECCGGDDNNEAEEDNHRTCPLCRTPLLAANTTSCGD-----WPAKNEPSWAVERLL 169

Query: 220 YLFGDDLH 197
           YLFGDDLH
Sbjct: 170 YLFGDDLH 177


>ref|NP_568404.1| RING/U-box domain-containing protein [Arabidopsis thaliana]
           gi|16209696|gb|AAL14405.1| AT5g20880/F22D1_50
           [Arabidopsis thaliana] gi|23463037|gb|AAN33188.1|
           At5g20880/F22D1_50 [Arabidopsis thaliana]
           gi|26451529|dbj|BAC42862.1| unknown protein [Arabidopsis
           thaliana] gi|332005517|gb|AED92900.1| RING/U-box
           domain-containing protein [Arabidopsis thaliana]
          Length = 176

 Score =  148 bits (374), Expect = 1e-33
 Identities = 83/188 (44%), Positives = 108/188 (57%), Gaps = 18/188 (9%)
 Frame = -2

Query: 706 MGFSVEYSGLVLTHFLYNVTLILSLLRCVFCWVTRSMGFXXXXXXXXXXSTVPQVGLSSG 527
           M F +E SGL++T  LY + +++++LR +  W+ R              ST         
Sbjct: 1   MSFFIEDSGLIVTQLLYKMAVLITVLRWILAWILRYRS--------RSRSTSSSTSACPS 52

Query: 526 LTAQMIRETLDVVTYGDIMHNLPGTC-DTCAVCLNELKKNDRVRELRNCCHVFHIKCIDR 350
           +++Q I+E+L V T+ D     P    DTCAVCL +L+  D VRELRNC H+FH +CIDR
Sbjct: 53  ISSQAIKESLSVTTFRDAAERSPAMINDTCAVCLGDLEDGDEVRELRNCSHMFHRECIDR 112

Query: 349 WLDH----GDQKN---------CPLCRAPLL---VTSCGSGLDGGW-ARSEPSWAVERLL 221
           WLD+    GD+ N         CPLCR PLL    TSCG      W  ++EPSWAVERLL
Sbjct: 113 WLDYECCGGDENNEGEEDNHRTCPLCRTPLLAANTTSCGD-----WPTKNEPSWAVERLL 167

Query: 220 YLFGDDLH 197
           YLFGDDLH
Sbjct: 168 YLFGDDLH 175


>ref|NP_001146854.1| RING zinc finger protein-like [Zea mays]
           gi|195604260|gb|ACG23960.1| RING zinc finger
           protein-like [Zea mays]
          Length = 173

 Score =  144 bits (364), Expect = 2e-32
 Identities = 82/183 (44%), Positives = 108/183 (59%), Gaps = 14/183 (7%)
 Frame = -2

Query: 706 MGFSVEYSGLVLTHFLYNVTLILSLLRCVFCWVTRSMGFXXXXXXXXXXSTVPQVGLSSG 527
           M F +E SGL++T  LY + ++++LLR +F W+ R              ST      +  
Sbjct: 1   MSFFIEDSGLIVTQLLYQMAVLITLLRWIFTWILRYRS----------RSTSSSSSSTPP 50

Query: 526 LTAQMIRETLDVVTYGDIMHNLPGTC-DTCAVCLNELKKNDRVRELRNCCHVFHIKCIDR 350
           +++Q I+E+L V T+ D     P    DTCAVCL +L+  D VRELRNC HVFH +CIDR
Sbjct: 51  ISSQTIKESLAVTTFRDAADRSPELISDTCAVCLGDLEDGDEVRELRNCSHVFHRECIDR 110

Query: 349 WLDH---------GDQKN---CPLCRAPLLVTSCGSGLDGGW-ARSEPSWAVERLLYLFG 209
           WLD+         G++ N   CPLCR PLL  +  S  D  W  ++EPSWAVERLLYLFG
Sbjct: 111 WLDYECCGGDDNDGEEDNHRTCPLCRTPLLAANTSSCAD--WPVKNEPSWAVERLLYLFG 168

Query: 208 DDL 200
           DDL
Sbjct: 169 DDL 171