BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022277
         (1365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003530467.1| PREDICTED: pentatricopeptide repeat-containi...   116   1e-23
ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containi...   112   2e-22
emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera]   112   3e-22
ref|NP_197102.2| pentatricopeptide repeat-containing protein [Ar...   111   5e-22
emb|CAC01797.1| putative protein [Arabidopsis thaliana]               111   5e-22

>ref|XP_003530467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
            mitochondrial-like [Glycine max]
          Length = 628

 Score =  116 bits (291), Expect = 1e-23
 Identities = 83/248 (33%), Positives = 130/248 (52%)
 Frame = +3

Query: 621  SNKFIISPRRSCNYFSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTP 800
            ++ F ++P  S  +FS+E VL Q  + D++L V   I SK   +++ KT L SN V +T 
Sbjct: 38   NSTFQLNP--SFRHFSSEPVLAQ-ADTDNLLVV--DIFSKPADSEDFKTLLDSNRVMITH 92

Query: 801  KLVFSTLNSLQGDVETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLL 980
              V + L  L  +VE AR+FF +V E   ER+ +  CY SML +LGT+G   VHEFW L+
Sbjct: 93   DAVLAVLWKLDSNVEAARRFFLWVSENHPERLSS-KCYNSMLRVLGTNG--VVHEFWDLV 149

Query: 981  QVMXXXXXXXXXXXXYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVIN 1160
             VM             + V +SF+             +Y N   +N +  V   + N + 
Sbjct: 150  DVMKKKGYGVSKGVK-EIVLESFEKGGMVADVAKLKGLYDNLNEKN-IAIVCRIVRNNV- 206

Query: 1161 EKDSFDFPSDVQQKILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFL 1340
                  +  DV+++I D+N  +S +++KMV+E +   P K L+FF W + +  FK D   
Sbjct: 207  ------WDDDVERQIKDLNVGFSGDVVKMVLESLASEPAKALIFFRWLEESGMFKQDGAT 260

Query: 1341 YDAVVKVL 1364
            Y+A+ +VL
Sbjct: 261  YNAMARVL 268


>ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
            mitochondrial-like [Glycine max]
          Length = 629

 Score =  112 bits (281), Expect = 2e-22
 Identities = 81/248 (32%), Positives = 131/248 (52%)
 Frame = +3

Query: 621  SNKFIISPRRSCNYFSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTP 800
            ++ F ++P  S   FS+E VL Q  + DH+L  +  I SK   +++ KT L SN V +T 
Sbjct: 38   NSTFPLNP--SFRRFSSEPVLAQ-ADTDHLL--VADIFSKPVDSEDFKTLLGSNRVSITH 92

Query: 801  KLVFSTLNSLQGDVETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLL 980
              V + L     +V+ AR+FF +V E   ER+ +  CY SML +LGT+G  +V EFW L+
Sbjct: 93   DAVLAVLGKFDSNVDAARRFFQWVSENHPERLSS-KCYNSMLCVLGTNG--FVDEFWDLV 149

Query: 981  QVMXXXXXXXXXXXXYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVIN 1160
             VM             ++V +SF+             ++ NS+ +N +  V   + N + 
Sbjct: 150  NVMKKKGYGVSKGVK-ERVLESFEKGGMDGDVAKLKGLFDNSKEKN-IAIVCRIVRNNV- 206

Query: 1161 EKDSFDFPSDVQQKILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFL 1340
                  +  DV+++I D+N  +S E++K V+E +V  P K L+FF W + +  FK D   
Sbjct: 207  ------WGDDVEKQIEDLNVGFSSEVVKTVLESLVLEPVKALIFFRWLEESGLFKHDGRT 260

Query: 1341 YDAVVKVL 1364
            Y+A+ +VL
Sbjct: 261  YNAMARVL 268


>emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera]
          Length = 650

 Score =  112 bits (279), Expect = 3e-22
 Identities = 89/298 (29%), Positives = 154/298 (51%), Gaps = 11/298 (3%)
 Frame = +3

Query: 504  KLLLRRPSTRYPLKLA--CTH--LKLFQVNQNLSLFQNNNAFGSNKFIISPRRSCNY--- 662
            +LLL R  +R PL ++   +H  +K    +Q L  F +     S+  +I      N+   
Sbjct: 6    RLLLLRTHSRSPLSISHIFSHFPVKSDHSSQTLRFFSSFLQGHSHHCVIDSTELRNFSGP 65

Query: 663  ----FSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTPKLVFSTLNSL 830
                FS++  LE +K  DHV  V T I SK    DEIK  ++S+ + V+ +LV   L +L
Sbjct: 66   RSRSFSSDLALE-DKGLDHV--VFTDIFSKPKGFDEIKNEVESSDIVVSHELVLKVLENL 122

Query: 831  QGDVETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLLQVMXXXXXXX 1010
            + + E AR  F +V   E+ER+ +   Y  MLGILG++G  +V EFW L++VM       
Sbjct: 123  ESNPEVARXVFDWVLRAESERLSS-KSYNLMLGILGSNG--FVSEFWDLVEVMKKKGYGV 179

Query: 1011 XXXXXYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVINEKDSFDFPSD 1190
                 Y K  ++F+             ++++   +NS++++ SR+S +I  +   D   +
Sbjct: 180  SKAA-YVKALENFEKEALGSDLEKLRGLFASGSVDNSIQKICSRVSKIIRSEVWGD---N 235

Query: 1191 VQQKILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFLYDAVVKVL 1364
            V+ ++ ++   +S +L+ MV+E +   P K L+FF W + +   K D   Y+A+++VL
Sbjct: 236  VEGQLHNLKVTFSGDLVAMVLENLGLEPMKALIFFRWVEESDLXKHDKXTYNAMLRVL 293


>ref|NP_197102.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75246487|sp|Q8LPF1.1|PP387_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g15980, mitochondrial; Flags: Precursor
            gi|20856902|gb|AAM26690.1| AT5g15980/F1N13_120
            [Arabidopsis thaliana] gi|25090366|gb|AAN72285.1|
            At5g15980/F1N13_120 [Arabidopsis thaliana]
            gi|332004849|gb|AED92232.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 668

 Score =  111 bits (277), Expect = 5e-22
 Identities = 71/234 (30%), Positives = 120/234 (51%)
 Frame = +3

Query: 663  FSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTPKLVFSTLNSLQGDV 842
            FS+E  +E+    +   A +  I S+ +  DEI+  L+S+ V ++  L    L  L+ + 
Sbjct: 74   FSSEPAVEEKSSAE---ATVIDIFSRLSGEDEIRKELESSGVVISQDLALKVLRKLESNP 130

Query: 843  ETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLLQVMXXXXXXXXXXX 1022
            + A+ FF ++ E   E + + N Y  ML ILG +G   V EFW L+ VM           
Sbjct: 131  DVAKSFFQWIKEASPEELSSKN-YNMMLRILGGNG--LVDEFWGLVDVMKKKGHGLSANV 187

Query: 1023 XYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVINEKDSFDFPSDVQQK 1202
              DKV D FQ             ++++   +NS + V  R+  ++ +++  D   DV+++
Sbjct: 188  R-DKVGDKFQKDGLESDLLRLRKLFTSDCLDNSAENVCDRVCKIVMKEEWGD---DVEKR 243

Query: 1203 ILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFLYDAVVKVL 1364
            + D+N  +  +L+KM+VE++   PRK LLFF W   +  FK D   Y+A+ +VL
Sbjct: 244  VRDLNVEFKSDLVKMIVERLDVEPRKALLFFRWIDESDLFKHDEKTYNAMARVL 297


>emb|CAC01797.1| putative protein [Arabidopsis thaliana]
          Length = 645

 Score =  111 bits (277), Expect = 5e-22
 Identities = 71/234 (30%), Positives = 120/234 (51%)
 Frame = +3

Query: 663  FSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTPKLVFSTLNSLQGDV 842
            FS+E  +E+    +   A +  I S+ +  DEI+  L+S+ V ++  L    L  L+ + 
Sbjct: 51   FSSEPAVEEKSSAE---ATVIDIFSRLSGEDEIRKELESSGVVISQDLALKVLRKLESNP 107

Query: 843  ETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLLQVMXXXXXXXXXXX 1022
            + A+ FF ++ E   E + + N Y  ML ILG +G   V EFW L+ VM           
Sbjct: 108  DVAKSFFQWIKEASPEELSSKN-YNMMLRILGGNG--LVDEFWGLVDVMKKKGHGLSANV 164

Query: 1023 XYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVINEKDSFDFPSDVQQK 1202
              DKV D FQ             ++++   +NS + V  R+  ++ +++  D   DV+++
Sbjct: 165  R-DKVGDKFQKDGLESDLLRLRKLFTSDCLDNSAENVCDRVCKIVMKEEWGD---DVEKR 220

Query: 1203 ILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFLYDAVVKVL 1364
            + D+N  +  +L+KM+VE++   PRK LLFF W   +  FK D   Y+A+ +VL
Sbjct: 221  VRDLNVEFKSDLVKMIVERLDVEPRKALLFFRWIDESDLFKHDEKTYNAMARVL 274