BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022192
         (1237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]   358   2e-96
ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containi...   355   1e-95
ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   339   7e-91
emb|CBI36964.3| unnamed protein product [Vitis vinifera]              339   7e-91
ref|XP_002515265.1| pentatricopeptide repeat-containing protein,...   314   3e-83

>emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
          Length = 494

 Score =  358 bits (919), Expect = 2e-96
 Identities = 174/338 (51%), Positives = 244/338 (72%)
 Frame = +1

Query: 220  KSSELYKRLSVLGGRNDMNVGETLNEWAKEGKSVNKKEIIGFVYQLRKYKKYNHAIQLLE 399
            K + LY +LS L G  + +V ETL++W KEGKSV + ++I  V QLR++KKY HA Q+ E
Sbjct: 27   KEASLYWKLSALRG-TEGDVAETLDKWVKEGKSVKRFDMISCVNQLRRFKKYKHAAQIYE 85

Query: 400  WLDKRGQTLSYANQAVHLDLIAKAKGIDSAEKYFTSLPESSKNKLTYGALLNCYCQEKMT 579
            W++K    L+ A++A+ +DL+AK +GI  AE YF SL ES+K   TYGALLNCYC+E M 
Sbjct: 86   WMEKSKNDLNNADRAIRIDLLAKTEGIAQAENYFNSLQESAKTNKTYGALLNCYCKENMV 145

Query: 580  KKAMDLLEKMKEQNLASTCLAYNNIISLHMRSGEPEKVPLLVQEMKEKKITTNIYTYAFL 759
             KA++L +K+KE N  S+ L+YNN+ISL++R G+PEKVP LV EM+EK I  ++YTY  L
Sbjct: 146  DKAVELFKKLKELNFVSSALSYNNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLL 205

Query: 760  MSSYALLKDIESAGRVIEEMKTDGISRNWSIYANLASIYVKEGNFDQANVTLKQMEKRMD 939
            M+SYA +KD E+  +V+E+MK  G+ R+W  Y NLA+IYV  G+  +AN  L+++E+  +
Sbjct: 206  MNSYASVKDFEAVEQVLEKMKKRGVERDWFTYGNLANIYVDAGHTKKANYALQKLEQNKN 265

Query: 940  VRDRKAYYILIGLYSHTSNKLGVDRVWDSLKSAFPELTNMCYLSKLQALHRLGDTDGLKK 1119
            + D +A+ +LI LY+ TSN  GV+R W+SLK A P++ N  YL  L AL +LGD  GL+K
Sbjct: 266  LHDPEAFRMLINLYARTSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEK 325

Query: 1120 CFDDWESGCSNYDIKLVNVLIDSYLSRGMIPEAEALLE 1233
            CF +WESGCS YD++L NV+++SYL+R MI EA  L E
Sbjct: 326  CFKEWESGCSTYDVRLSNVMLESYLNREMIEEANLLSE 363


>ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
            mitochondrial [Vitis vinifera]
            gi|296089781|emb|CBI39600.3| unnamed protein product
            [Vitis vinifera]
          Length = 498

 Score =  355 bits (911), Expect = 1e-95
 Identities = 172/338 (50%), Positives = 244/338 (72%)
 Frame = +1

Query: 220  KSSELYKRLSVLGGRNDMNVGETLNEWAKEGKSVNKKEIIGFVYQLRKYKKYNHAIQLLE 399
            K + LY +LS L G  + +V ETL++W KEGKSV + ++I  V QLR++KKY HA Q+ E
Sbjct: 31   KEASLYWKLSALRG-TEGDVAETLDKWVKEGKSVKRFDMISCVNQLRRFKKYKHAAQIYE 89

Query: 400  WLDKRGQTLSYANQAVHLDLIAKAKGIDSAEKYFTSLPESSKNKLTYGALLNCYCQEKMT 579
            W++K    L+ A++A+ +DL+AK +GI  AE YF SL ES+K   TYGALLNCYC+E M 
Sbjct: 90   WMEKSKNDLNNADRAIRIDLLAKTEGIAQAENYFNSLQESAKTNKTYGALLNCYCKENML 149

Query: 580  KKAMDLLEKMKEQNLASTCLAYNNIISLHMRSGEPEKVPLLVQEMKEKKITTNIYTYAFL 759
             KA++L +K+KE N  S+ L+YNN+ISL++R G+PEKVP LV EM+EK I  ++YTY  L
Sbjct: 150  DKAVELFKKLKELNFVSSALSYNNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLL 209

Query: 760  MSSYALLKDIESAGRVIEEMKTDGISRNWSIYANLASIYVKEGNFDQANVTLKQMEKRMD 939
            M+SYA +KD E+  +V+++MK  G+ R+W  Y NLA+IYV  G+  +AN  L+++E+  +
Sbjct: 210  MNSYASVKDFEAVEQVLDKMKKRGVERDWFTYGNLANIYVDAGHTKKANYALQKLEQNKN 269

Query: 940  VRDRKAYYILIGLYSHTSNKLGVDRVWDSLKSAFPELTNMCYLSKLQALHRLGDTDGLKK 1119
            + D +A+ +LI LY+ TSN  GV+R W+SLK A P++ N  YL  L AL +LGD  GL+K
Sbjct: 270  LHDPEAFRMLINLYARTSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEK 329

Query: 1120 CFDDWESGCSNYDIKLVNVLIDSYLSRGMIPEAEALLE 1233
            CF +WESGCS YD++L NV+++SYL+R +I EA  L E
Sbjct: 330  CFKEWESGCSTYDVRLSNVMLESYLNREIIEEANLLSE 367


>ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At1g02370, mitochondrial-like [Vitis vinifera]
          Length = 506

 Score =  339 bits (870), Expect = 7e-91
 Identities = 167/338 (49%), Positives = 237/338 (70%), Gaps = 1/338 (0%)
 Frame = +1

Query: 220  KSSELYKRLSVLGGRNDMNVGETLNEWAKEGKSVNKKEIIGFVYQLRKYKKYNHAIQLLE 399
            +   LY RLS LG     +V +TLNE  KEGK + K E+   + QLRKY+++ HA+++++
Sbjct: 42   RQPRLYHRLSALGATGG-SVADTLNEHIKEGKLIAKHELSSCIKQLRKYRQFQHALEIMD 100

Query: 400  WLDKRGQTLSYANQAVHLDLIAKAKGIDSAEKYFTSLPESSKNKLTYGALLNCYCQEKMT 579
            W++ R    SYA+ AV LDL++K KG+ +AE+YF +L  S+KN LTYG LLNCYC+EKM 
Sbjct: 101  WMENRKIFFSYADYAVRLDLLSKTKGLATAEEYFNNLSPSAKNLLTYGTLLNCYCKEKME 160

Query: 580  KKAMDLLEKMKEQNLASTCLAYNNIISLHMRSGEPEKVPLLVQEMKEKKITTNIYTYAFL 759
            +KA+ L EKM E N AST L +NN++SLHMR G+PE VP LV EMK++ I+ + +TY  L
Sbjct: 161  EKALALFEKMDELNFASTSLTFNNLMSLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNIL 220

Query: 760  MSSYALLKDIESAGRVIEEMKTDGISR-NWSIYANLASIYVKEGNFDQANVTLKQMEKRM 936
            M SYA L DIE A RV+EE+K +   + +W+ Y+NLA++YV    F++A + LK++E+ M
Sbjct: 221  MQSYARLNDIEGAERVLEEIKRENEDKLSWTTYSNLAAVYVNARLFEKAELALKKLEEEM 280

Query: 937  DVRDRKAYYILIGLYSHTSNKLGVDRVWDSLKSAFPELTNMCYLSKLQALHRLGDTDGLK 1116
               DR AY+ LI LY+  +N   V+RVW+SLKSAFP+  NM Y   LQAL  L D DGLK
Sbjct: 281  GFHDRLAYHFLISLYAGINNLSEVNRVWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLK 340

Query: 1117 KCFDDWESGCSNYDIKLVNVLIDSYLSRGMIPEAEALL 1230
             CF++W+S C ++D++L NV + ++L   MI +AE++L
Sbjct: 341  ICFEEWKSSCFSFDVRLANVAVRAFLGWDMIKDAESIL 378


>emb|CBI36964.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  339 bits (870), Expect = 7e-91
 Identities = 167/338 (49%), Positives = 237/338 (70%), Gaps = 1/338 (0%)
 Frame = +1

Query: 220  KSSELYKRLSVLGGRNDMNVGETLNEWAKEGKSVNKKEIIGFVYQLRKYKKYNHAIQLLE 399
            +   LY RLS LG     +V +TLNE  KEGK + K E+   + QLRKY+++ HA+++++
Sbjct: 81   RQPRLYHRLSALGATGG-SVADTLNEHIKEGKLIAKHELSSCIKQLRKYRQFQHALEIMD 139

Query: 400  WLDKRGQTLSYANQAVHLDLIAKAKGIDSAEKYFTSLPESSKNKLTYGALLNCYCQEKMT 579
            W++ R    SYA+ AV LDL++K KG+ +AE+YF +L  S+KN LTYG LLNCYC+EKM 
Sbjct: 140  WMENRKIFFSYADYAVRLDLLSKTKGLATAEEYFNNLSPSAKNLLTYGTLLNCYCKEKME 199

Query: 580  KKAMDLLEKMKEQNLASTCLAYNNIISLHMRSGEPEKVPLLVQEMKEKKITTNIYTYAFL 759
            +KA+ L EKM E N AST L +NN++SLHMR G+PE VP LV EMK++ I+ + +TY  L
Sbjct: 200  EKALALFEKMDELNFASTSLTFNNLMSLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNIL 259

Query: 760  MSSYALLKDIESAGRVIEEMKTDGISR-NWSIYANLASIYVKEGNFDQANVTLKQMEKRM 936
            M SYA L DIE A RV+EE+K +   + +W+ Y+NLA++YV    F++A + LK++E+ M
Sbjct: 260  MQSYARLNDIEGAERVLEEIKRENEDKLSWTTYSNLAAVYVNARLFEKAELALKKLEEEM 319

Query: 937  DVRDRKAYYILIGLYSHTSNKLGVDRVWDSLKSAFPELTNMCYLSKLQALHRLGDTDGLK 1116
               DR AY+ LI LY+  +N   V+RVW+SLKSAFP+  NM Y   LQAL  L D DGLK
Sbjct: 320  GFHDRLAYHFLISLYAGINNLSEVNRVWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLK 379

Query: 1117 KCFDDWESGCSNYDIKLVNVLIDSYLSRGMIPEAEALL 1230
             CF++W+S C ++D++L NV + ++L   MI +AE++L
Sbjct: 380  ICFEEWKSSCFSFDVRLANVAVRAFLGWDMIKDAESIL 417


>ref|XP_002515265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545745|gb|EEF47249.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score =  314 bits (804), Expect = 3e-83
 Identities = 156/342 (45%), Positives = 230/342 (67%), Gaps = 3/342 (0%)
 Frame = +1

Query: 217  KKSSELYKRLSVLGGRNDMNVGETLNEWAKEGKSVNKKEIIGFVYQLRKYKKYNHAIQLL 396
            ++S +LY +LS LG     +V  TLNE   EGK++ K E+   + +LRKY++++HA +++
Sbjct: 35   RQSEKLYHKLSALGATGG-SVSRTLNEHIMEGKTITKIELSRCIRELRKYRRFDHAFEIM 93

Query: 397  EWLDKRGQTLSYANQAVHLDLIAKAKGIDSAEKYFTSLPESSKNKLT-YGALLNCYCQEK 573
            EW++KR    SYA++A+ LDLI KA+GI +AE YF  L  S+KN  T YGALLNCYC+E 
Sbjct: 94   EWMEKRKMNFSYADRAIRLDLIGKARGIAAAEDYFNGLSPSAKNHHTSYGALLNCYCKEL 153

Query: 574  MTKKAMDLLEKMKEQNLASTCLAYNNIISLHMRSGEPEKVPLLVQEMKEKKITTNIYTYA 753
            M+ KA+ L ++M E+    + L +NN++S++MR G+PEKVP LV EMK++K++   +TY 
Sbjct: 154  MSDKALALFQEMDEKKFLYSSLPFNNLMSMYMRLGQPEKVPPLVDEMKKRKVSPCSFTYN 213

Query: 754  FLMSSYALLKDIESAGRVIEEMKTDGISRN--WSIYANLASIYVKEGNFDQANVTLKQME 927
              M SY  L D +   RV+ E+  DG   N  W+ Y+NLA+IY+K G F++A   LK++E
Sbjct: 214  IWMQSYGCLNDFQGVDRVLREIVNDGGKDNLQWTTYSNLATIYLKAGIFEKAESALKKLE 273

Query: 928  KRMDVRDRKAYYILIGLYSHTSNKLGVDRVWDSLKSAFPELTNMCYLSKLQALHRLGDTD 1107
              M  R+R+AY+ LI +Y+ T N   V+RVW  LKS+F  + N+ YL  LQAL +L D +
Sbjct: 274  AIMGFRNREAYHFLISIYAGTGNSNEVNRVWGLLKSSFNMINNLSYLVMLQALAKLKDVE 333

Query: 1108 GLKKCFDDWESGCSNYDIKLVNVLIDSYLSRGMIPEAEALLE 1233
            G+ KCF +WESGC+NYD+++ NV I  +L   M  EAE + +
Sbjct: 334  GVAKCFREWESGCTNYDMRIANVAIRVFLQHDMYEEAELIFD 375