BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022016
         (1215 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267944.2| PREDICTED: protein ACCUMULATION AND REPLICAT...   251   1e-81
ref|XP_002521879.1| 1-phosphatidylinositol-4-phosphate 5-kinase,...   211   4e-70
emb|CBI27516.3| unnamed protein product [Vitis vinifera]              251   9e-66
ref|XP_004166810.1| PREDICTED: protein ACCUMULATION AND REPLICAT...   197   4e-62
ref|NP_177638.2| GTP binding protein [Arabidopsis thaliana] gi|3...   191   1e-57

>ref|XP_002267944.2| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS
            3-like [Vitis vinifera]
          Length = 727

 Score =  251 bits (640), Expect(2) = 1e-81
 Identities = 124/223 (55%), Positives = 170/223 (76%), Gaps = 1/223 (0%)
 Frame = +1

Query: 421  LFVASAGYGSDHITAIELLKAVKSAEGLAVGIVLKPFSFEGRRRQEEVTELVTKLREHTN 600
            + VASAGYGSDHITAI++L+  +SA GLA+G++LKPFSFEG+RRQ EV  LV +L+EHTN
Sbjct: 87   VLVASAGYGSDHITAIDILRTTRSANGLAIGVILKPFSFEGKRRQNEVKNLVERLQEHTN 146

Query: 601  CCIVVDTDVLLKKEVVTLAEALKSANNVVLLSINSIFVLMSAKQKKL-ECPQNIKKEFGV 777
             CIV+DTD LLKK++VTL EALK+A+N VLL+IN+I VL+S   KKL + P +  KE   
Sbjct: 147  FCIVIDTDTLLKKDLVTLDEALKTADNGVLLAINAISVLISGMHKKLIDAPHDNMKELKG 206

Query: 778  PXXXXXXXXXXXARVGYGAGNNMKSSIVRAVFDCPFIAGGLKELNGVVFWTLACAVVIDN 957
            P           A++G+GAG N+++SI++A++DCPF++  LK+LNG V   LA +V+I+N
Sbjct: 207  PEIIKILESHKEAKIGFGAGYNIETSILQAIYDCPFLSVCLKDLNGTVICILASSVIINN 266

Query: 958  SNFHTFLHTFRQATGWQNELVLSIVHEPNLEPNLFVSTVIVCG 1086
            S+  +FLH FR+ T    E+++SI+HEPNLEPNL V+TVI+ G
Sbjct: 267  SDVLSFLHVFRKTTECTREIIISIIHEPNLEPNLIVTTVIILG 309



 Score = 80.1 bits (196), Expect(2) = 1e-81
 Identities = 46/80 (57%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
 Frame = +3

Query: 195 DKNFVQVIGIGSRKDAILDFCLDSPFQSSFSSIRFWNIISSDSSPVKLQQRTIGEDAMMS 374
           D  FV+VIGIGSRKDA++DFCL+SP QS  SS+RFWNI   DS  V LQQR+IG D  ++
Sbjct: 14  DSEFVEVIGIGSRKDAVIDFCLNSPLQS--SSVRFWNIFRRDSLKVHLQQRSIGRD--IT 69

Query: 375 MELQEFQLSAP---RTVILV 425
             L E  LSA    +T++LV
Sbjct: 70  PVLVETFLSAQQHLKTIVLV 89


>ref|XP_002521879.1| 1-phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus
            communis] gi|223538917|gb|EEF40515.1|
            1-phosphatidylinositol-4-phosphate 5-kinase, putative
            [Ricinus communis]
          Length = 760

 Score =  211 bits (536), Expect(2) = 4e-70
 Identities = 104/221 (47%), Positives = 153/221 (69%), Gaps = 1/221 (0%)
 Frame = +1

Query: 421  LFVASAGYGSDHITAIELLKAVKSAEGLAVGIVLKPFSFEGRRRQEEVTELVTKLREHTN 600
            + VASAGYG DH+TAI++LK V+S +G AV I L+PFSFEG+RRQ+EV  LV +++E+TN
Sbjct: 154  ILVASAGYGLDHLTAIDILKTVRSTDGFAVAICLRPFSFEGQRRQDEVKNLVGEIQEYTN 213

Query: 601  CCIVVDTDVLLKKEVVTLAEALKSANNVVLLSINSIFVLMSAKQKKL-ECPQNIKKEFGV 777
             CI +DTD LLKK++VTL EALK+AN  VLL++N++ +L+S    KL     N  KE  +
Sbjct: 214  FCIDIDTDTLLKKDLVTLDEALKTANTAVLLAMNAVSILISEMHLKLFAALHNNVKELTI 273

Query: 778  PXXXXXXXXXXXARVGYGAGNNMKSSIVRAVFDCPFIAGGLKELNGVVFWTLACAVVIDN 957
                        A++G+GAGN++KSSI+ A++DCPFI  GL+  NG++   +A +  I+N
Sbjct: 274  SEVLKILESHKEAKIGFGAGNSVKSSILEALYDCPFIGAGLENSNGIIICNIASSDFIEN 333

Query: 958  SNFHTFLHTFRQATGWQNELVLSIVHEPNLEPNLFVSTVIV 1080
             +  + L TF Q   +  E+++S  HEPNL+ N+ V+T+I+
Sbjct: 334  RDVDSSLLTFHQTAKYMGEIIISSAHEPNLDSNMIVTTIIM 374



 Score = 82.0 bits (201), Expect(2) = 4e-70
 Identities = 56/140 (40%), Positives = 78/140 (55%), Gaps = 4/140 (2%)
 Frame = +3

Query: 18  STLSSFPPNSNQLF---NFSKRRKHYRNPNHVSFQPQISFKSDQISNDYYLYPQCKDVEW 188
           S +SS     N  F   +F+KR     N N+  F P+I+   +   ND   +     V +
Sbjct: 19  SCISSKSAIYNHFFRKIHFNKRVSSISNSNNNRF-PRIAGSLEYKGNDRTEFRGDDSVRF 77

Query: 189 REDKNFVQVIGIGSRKDAILDFCLDSPFQSSFSSIRFWNIISSDSSPVKLQQRTIGEDAM 368
             +  FV+VIGIGSR D++LDFC DSPFQ S SS+RFWNI   DS  V+LQ+R   +D +
Sbjct: 78  LSESKFVEVIGIGSRIDSVLDFCSDSPFQLS-SSLRFWNIHVKDSLNVRLQERGFEKDVI 136

Query: 369 -MSMELQEFQLSAPRTVILV 425
              +E  +F  S  + +ILV
Sbjct: 137 PRVLEHSQFLQSCSKAIILV 156


>emb|CBI27516.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  251 bits (640), Expect(2) = 9e-66
 Identities = 124/223 (55%), Positives = 170/223 (76%), Gaps = 1/223 (0%)
 Frame = +1

Query: 421  LFVASAGYGSDHITAIELLKAVKSAEGLAVGIVLKPFSFEGRRRQEEVTELVTKLREHTN 600
            + VASAGYGSDHITAI++L+  +SA GLA+G++LKPFSFEG+RRQ EV  LV +L+EHTN
Sbjct: 56   VLVASAGYGSDHITAIDILRTTRSANGLAIGVILKPFSFEGKRRQNEVKNLVERLQEHTN 115

Query: 601  CCIVVDTDVLLKKEVVTLAEALKSANNVVLLSINSIFVLMSAKQKKL-ECPQNIKKEFGV 777
             CIV+DTD LLKK++VTL EALK+A+N VLL+IN+I VL+S   KKL + P +  KE   
Sbjct: 116  FCIVIDTDTLLKKDLVTLDEALKTADNGVLLAINAISVLISGMHKKLIDAPHDNMKELKG 175

Query: 778  PXXXXXXXXXXXARVGYGAGNNMKSSIVRAVFDCPFIAGGLKELNGVVFWTLACAVVIDN 957
            P           A++G+GAG N+++SI++A++DCPF++  LK+LNG V   LA +V+I+N
Sbjct: 176  PEIIKILESHKEAKIGFGAGYNIETSILQAIYDCPFLSVCLKDLNGTVICILASSVIINN 235

Query: 958  SNFHTFLHTFRQATGWQNELVLSIVHEPNLEPNLFVSTVIVCG 1086
            S+  +FLH FR+ T    E+++SI+HEPNLEPNL V+TVI+ G
Sbjct: 236  SDVLSFLHVFRKTTECTREIIISIIHEPNLEPNLIVTTVIILG 278



 Score = 27.3 bits (59), Expect(2) = 9e-66
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +3

Query: 303 NIISSDSSPVKLQQRTIGEDAMMSMELQEFQLSAP---RTVILV 425
           NI   DS  V LQQR+IG D  ++  L E  LSA    +T++LV
Sbjct: 17  NIFRRDSLKVHLQQRSIGRD--ITPVLVETFLSAQQHLKTIVLV 58


>ref|XP_004166810.1| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS
            3-like, partial [Cucumis sativus]
          Length = 707

 Score =  197 bits (502), Expect(2) = 4e-62
 Identities = 97/223 (43%), Positives = 155/223 (69%), Gaps = 1/223 (0%)
 Frame = +1

Query: 421  LFVASAGYGSDHITAIELLKAVKSAEGLAVGIVLKPFSFEGRRRQEEVTELVTKLREHTN 600
            + V SAGYG D+  A+++L+ ++SA G  V IVLKPFSFEG+RRQ+EV  LV +L+EHT+
Sbjct: 155  ILVVSAGYGFDYSAAVDMLRTIRSANGFTVTIVLKPFSFEGKRRQDEVKRLVGRLKEHTS 214

Query: 601  CCIVVDTDVLLKKEVVTLAEALKSANNVVLLSINSIFVLMSAK-QKKLECPQNIKKEFGV 777
              I +DTD LL+K++VTL +A++SANN VLL+INS+ ++ S    K ++ PQN  KE G 
Sbjct: 215  FLIDIDTDRLLEKDLVTLDDAVRSANNAVLLAINSMSIVKSEMIIKFVDEPQNDLKELGA 274

Query: 778  PXXXXXXXXXXXARVGYGAGNNMKSSIVRAVFDCPFIAGGLKELNGVVFWTLACAVVIDN 957
                         ++G+GAG+N ++SI+++++DCPF+   LK+L G+V   +A + +ID+
Sbjct: 275  MDVMEILENLKEGKIGFGAGHNFRTSILKSIYDCPFLTVHLKDLKGMVVCIVASSSIIDD 334

Query: 958  SNFHTFLHTFRQATGWQNELVLSIVHEPNLEPNLFVSTVIVCG 1086
            ++  T L TFR+ T +  +++LS + + N+EPN  ++TV++ G
Sbjct: 335  NDKSTLLKTFREVTTYTGKVILSTIQDLNIEPNFLMTTVLIVG 377



 Score = 68.2 bits (165), Expect(2) = 4e-62
 Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
 Frame = +3

Query: 63  FSKRRKHYRNPNHVSFQPQI-SFKSDQISNDYYLYPQCKDVEWREDKNFVQVIGIGSRKD 239
           F +R+   R P + +  P + +  +  +SN        +D+ W +D  FV+VIGIGSRK+
Sbjct: 39  FHRRKMFLRFPEYRNSYPFLHTTPNASLSNATGRSNNERDI-W-DDHEFVEVIGIGSRKE 96

Query: 240 AILDFCLDSPFQSSFSSIRFWNIISSDSSPVKLQQRTIGEDAMMSMELQEFQL-SAPRTV 416
           A+LDFCL+S   +  SS+RFW I+  DSS V+L QR + +D    M      L S  + V
Sbjct: 97  AVLDFCLESALMT--SSLRFWQIVKHDSSKVQLLQRFVEKDYSPRMIDVPLSLQSCSKAV 154

Query: 417 ILV 425
           ILV
Sbjct: 155 ILV 157


>ref|NP_177638.2| GTP binding protein [Arabidopsis thaliana]
            gi|327507752|sp|Q6F6B5.2|ARC3_ARATH RecName: Full=Protein
            ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3; Flags:
            Precursor gi|332197540|gb|AEE35661.1| GTP binding protein
            [Arabidopsis thaliana]
          Length = 741

 Score =  191 bits (486), Expect(2) = 1e-57
 Identities = 99/221 (44%), Positives = 145/221 (65%), Gaps = 1/221 (0%)
 Frame = +1

Query: 421  LFVASAGYGSDHITAIELLKAVKSAEGLAVGIVLKPFSFEGRRRQEEVTELVTKLREHTN 600
            + VASAGYGSD + AI +L AV+S   LAV ++LKPFSFEGR+R EEV EL  KL++HTN
Sbjct: 146  ILVASAGYGSDQVEAINILSAVRSGGNLAVAVLLKPFSFEGRKRLEEVNELARKLQQHTN 205

Query: 601  CCIVVDTDVLLKKEVVTLAEALKSANNVVLLSINSIFVLMSAKQKK-LECPQNIKKEFGV 777
             CI +D +VLL+K++VTL EAL++ANN V ++IN+   L+S      ++      KE   
Sbjct: 206  FCIDIDIEVLLQKDLVTLDEALRNANNAVSMAINAASALISGMHGNFIDVMHKDLKELEG 265

Query: 778  PXXXXXXXXXXXARVGYGAGNNMKSSIVRAVFDCPFIAGGLKELNGVVFWTLACAVVIDN 957
                        A+VG+G G+N+K+SI+RA++DCPF   GLK+LN ++   +A +V +  
Sbjct: 266  SEVKTILESYKEAKVGFGVGHNLKTSILRAIYDCPFFRPGLKDLNAII-CIVASSVPLQK 324

Query: 958  SNFHTFLHTFRQATGWQNELVLSIVHEPNLEPNLFVSTVIV 1080
             +  T L TFRQ   +  ++++S VHEP+LEP + V+T  +
Sbjct: 325  KDVKTILRTFRQTMEYTGDIIVSTVHEPDLEPKVRVTTFFI 365



 Score = 59.7 bits (143), Expect(2) = 1e-57
 Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = +3

Query: 204 FVQVIGIGSRKDAILDFCLDSPFQSSFSSIRFWNIISSDSSPVKLQQRTIGED-AMMSME 380
           F++V+ IGSRK++I+D CLDSPF S    +RFW+I    S  + LQQR   +D A+ +M 
Sbjct: 76  FIEVLVIGSRKESIMDSCLDSPFPS--LPLRFWSISKDSSGGLVLQQRLNHQDNALKTMN 133

Query: 381 LQEFQLSAPRTVILV 425
             E   S PR  ILV
Sbjct: 134 PIELLQSRPRAFILV 148