BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021954
         (370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514843.1| pentatricopeptide repeat-containing protein,...    57   2e-06
ref|XP_003629614.1| Pentatricopeptide repeat-containing protein ...    56   4e-06
ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat...    55   6e-06

>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 594

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = +1

Query: 199 VRDRSKSGTLG-LDEALGFFNRLIRYRPLPSIHPFTQLLGALVKTKHFSTVLSMYNAM 369
           VRD+ K G+    D+AL +FN+++   P P I  F QLL ALV+ KH+ +V+S+Y  M
Sbjct: 73  VRDKCKGGSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKM 130


>ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355523636|gb|AET04090.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 592

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
 Frame = +1

Query: 199 VRDRSKSGTL-GLDEALGFFNRLIRYRPLPSIHPFTQLLGALVKTKHFSTVLSMYNAM 369
           +R++ KSG L  +DEAL FF+ + +  PLPS+  FT LLG +VK KH++T +S+   M
Sbjct: 44  MRNQCKSGKLKSIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTTAISLVKEM 101


>ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 24/46 (52%), Positives = 35/46 (76%)
 Frame = +1

Query: 232 LDEALGFFNRLIRYRPLPSIHPFTQLLGALVKTKHFSTVLSMYNAM 369
           +D+AL  FNR++R RP PSI  F++LL ++ + KH+STVLS+Y  M
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQM 80