BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021393
         (1091 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    97   5e-18
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...    96   2e-17
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    92   2e-16
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    89   2e-15
emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group] gi...    85   3e-14

>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 97.4 bits (241), Expect = 5e-18
 Identities = 89/329 (27%), Positives = 145/329 (44%), Gaps = 1/329 (0%)
 Frame = -2

Query: 1018 TVLADKMVWAMERSGKLTVKSTYDFLRNKKCEKGQSSNVNYKTIKHMWAAPLPYSLQLFI 839
            T + D++ WA  +    +VK+ Y         KG + +  ++    +W+  +   ++ F+
Sbjct: 999  TPVPDELTWAFTKDATYSVKTAY------MIGKGGNLDNFHQAWVDIWSLDVSPKVRHFL 1052

Query: 838  WKVYMHVLPLGDRLTEKNMKGDFSCPFCSKELETAEHLFFTCDWTRTVWFSSQVGLRITP 659
            W++    LP+   L  +++  D  CP+   E+ET  H  F C   R +W  S  G +   
Sbjct: 1053 WRLCTTSLPVRSLLKHRHLTDDDLCPWGCGEIETQRHAIFDCPKMRDLWLDS--GCQNLC 1110

Query: 658  TQQPHSLRGRMELYLSWCNSKDRDLCLAGTHIMYLLQHIWRSRNEMKFEKRTANRDRIIR 479
            ++   +     +L +SW  S D  L + G    YL   IW  RN   F  +T     +++
Sbjct: 1111 SRD--ASMSMCDLLVSW-RSLDGKLRIKGA---YLAWCIWGERNAKIFNNKTTPSSVLMQ 1164

Query: 478  QSRILADKCYESFREESSISQTLINCSKNSIDKLFPEIPNDSIVIRFDASYNRNSGWAGA 299
            +   L +   E+      I Q L+   +    + +   P DSI +  DAS     GW G 
Sbjct: 1165 RVSRLVE---ENGSHARRIYQPLVP-RRTGSPRQWIAPPADSIKLNVDASL-AVDGWVGL 1219

Query: 298  GAIASNSEGGMVGAAVRRFKA*DIGE-AEMGAADLAILLARQLNYDRYVVEGDNLEVMKA 122
              IA  S+GG++ AAVRR +A    E AE  A +LA+ L R+    R ++E D   V+  
Sbjct: 1220 SVIARRSDGGVLFAAVRRVRAYWAPEIAEAKAVELAVKLGRRYGLQRVILESDCQVVINR 1279

Query: 121  LQGAACPWQLEVLKSHILFLVQVFNSCTF 35
            L   A       L    L L  +  SCT+
Sbjct: 1280 LSKNAI-----FLSDLDLVLFNILASCTY 1303


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score = 95.5 bits (236), Expect = 2e-17
 Identities = 91/341 (26%), Positives = 152/341 (44%), Gaps = 10/341 (2%)
 Frame = -2

Query: 1012 LADKMVWAMERSGKLTVKSTYDFLRNKKCEKGQSSNVNYKTIKHMWAAPLPYSLQLFIWK 833
            L D++ WA  + G  +VK+ Y         KG + +  ++    +W+  +   ++ F+W+
Sbjct: 1004 LQDELTWAYSKDGTYSVKTAY------MLGKGGNLDDFHRVWNILWSLNVSPKVRHFLWR 1057

Query: 832  VYMHVLPLGDRLTEKNMKGDFSCPFCSKELETAEHLFFTCDWTRTVWFSSQVGLRI-TPT 656
                 LP+   L  +++  +  CP C++E ET  HLF+ C  +  +W   ++G  I  P 
Sbjct: 1058 ACTSSLPVRKVLQRRHLIDEAGCPCCAREDETQFHLFYRCPMSLKLW--EELGSYILLPG 1115

Query: 655  QQPHSLRGRMELYLSWCNSKDRDLCLAGTHIMYLLQHIWRSRNEMKFE----KRTANRDR 488
             +  ++    +  + W +  D  +   G    Y+L ++W  RN   FE      T    R
Sbjct: 1116 IEDEAM---CDTLVRW-SQMDAKVVQKG---CYILWNVWVERNRRVFEHTSQPATVVGQR 1168

Query: 487  IIRQSRIL---ADKCYESFREESSISQTLINCSKNSIDKLFPEIPNDSIVIRFDASYNRN 317
            I+RQ       A K Y   R  +++S +            +   P  +I +  DAS    
Sbjct: 1169 IMRQVEDFNNYAVKIYGGMRSSAALSPS-----------RWYAPPVGAIKLNTDASL-AE 1216

Query: 316  SGWAGAGAIASNSEGGMVGAAVRRFKA*DIGE-AEMGAADLAILLARQLNYDRYVVEGDN 140
             GW G G IA +SEG +  AA RR +A    E AE  A  +A  LA+   Y   + E D+
Sbjct: 1217 EGWVGLGVIARDSEGKVCFAATRRVRAYWPPEVAECKAIYMATRLAQAHGYGDVIFESDS 1276

Query: 139  LEVMKALQGAACPW-QLEVLKSHILFLVQVFNSCTFNWISR 20
            L   K L  AA  +  L+ +   IL +   F+S +F+ + R
Sbjct: 1277 LVATKRLTKAAIFFSDLDAILGDILSMCNAFSSVSFSHVKR 1317


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 92.4 bits (228), Expect = 2e-16
 Identities = 90/363 (24%), Positives = 159/363 (43%), Gaps = 6/363 (1%)
 Frame = -2

Query: 1081 LNQCFHPFLSQLMQEIVVRPDTVLADKMVWAMERSGKLTVKSTY--DFLRNKKCEKGQSS 908
            LN  F P+ S  +Q I V       D+ +W M ++G+ TV+S Y  + L ++K     S 
Sbjct: 986  LNTLFQPWESTAIQRIPVALQKK-PDQWMWMMSKNGQFTVRSAYYHELLEDRKTGPSTSR 1044

Query: 907  NVNYKTIKHMWAAPLPYSLQLFIWKVYMHVLPLGDRLTEKNMKGDFSCPFCSKELETAEH 728
              N K  + +W A +P  ++LF WK   + L +   + ++ M  D +CP C ++ ET EH
Sbjct: 1045 GPNLKLWQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEH 1104

Query: 727  LFFTCDWTRTVWFSSQVGLRITPTQQPHSLRGRMELYLSWCNSKDRDLCLAGTHIMYLLQ 548
            L + CD +   W+ S + +  T   +  S R  +E  L     KD +       I +   
Sbjct: 1105 LIWGCDESSRAWYISPLRIH-TGNIEAGSFRIWVESLLD--THKDTEWWALFWMICW--- 1158

Query: 547  HIWRSRNEMKFEKRTANRDRIIRQSRILADKCYESFREESSISQTLINCSKNSIDKLFPE 368
            +IW  RN+  FEK+      ++ +    A +    F EE + +  +   + +      P 
Sbjct: 1159 NIWLGRNKWVFEKKKLAFQEVVER----AVRGVMEFEEECAHTSPVETLNTHENGWSVP- 1213

Query: 367  IPNDSIVIRFDASYNRNSGWAGAGAIASNSEGG-MVGAAVRRFKA*DIGEAEMGAADLAI 191
             P   + +  DA+  ++ G  G G +  ++EG  ++      +   D   AE  +    +
Sbjct: 1214 -PVGMVKLNVDAAVFKHVG-IGMGGVVRDAEGDVLLATCCGGWAMEDPAMAEACSLRYGL 1271

Query: 190  LLARQLNYDRYVVEGDNLEVMKALQGAA---CPWQLEVLKSHILFLVQVFNSCTFNWISR 20
             +A +  +   VVE D  ++   L+G A    P+   V    IL+L    ++  F  + R
Sbjct: 1272 KVAYEAGFRNLVVEMDCKKLFLQLRGKASDVTPFGRVV--DDILYLASKCSNVVFEHVKR 1329

Query: 19   VFN 11
              N
Sbjct: 1330 HCN 1332


>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
            gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
            thaliana] gi|7269807|emb|CAB79667.1| putative protein
            [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
            putative reverse transcriptase/RNA-dependent DNA
            polymerase [Arabidopsis thaliana]
            gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
            [Arabidopsis thaliana]
          Length = 575

 Score = 89.0 bits (219), Expect = 2e-15
 Identities = 82/343 (23%), Positives = 142/343 (41%), Gaps = 9/343 (2%)
 Frame = -2

Query: 1012 LADKMVWAMERSGKLTVKSTYDFLR---NKKCEKGQSSNVNYKTI-KHMWAAPLPYSLQL 845
            + D   W    SG  TVKS Y  L    NK+    + S  +   I + +W +     +Q 
Sbjct: 209  ILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQH 268

Query: 844  FIWKVYMHVLPLGDRLTEKNMKGDFSCPFCSKELETAEHLFFTCDWTRTVWFSSQVGLRI 665
            F+WK   + LP+   L  +++  + +C  C    ET  HL F C + R  W  S +    
Sbjct: 269  FLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSI---- 324

Query: 664  TPTQQPHSLRGRMELYLSW---CNSKDRDLCLAGTHIMYLLQHIWRSRNEMKFEKRTANR 494
             P          + + L W     + +     A   + +LL  +W++RNE+ F  R  N 
Sbjct: 325  -PIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNA 383

Query: 493  DRIIRQSRILADKCYE-SFREESSISQTLINCSKNSIDKLFPEIPNDSIVIRFDASYNRN 317
              ++R++    D   E   R E+    T    +++S  +  P  P+  +    DA++NR+
Sbjct: 384  QEVLRRAE---DDLEEWRIRTEAESCGTKPQVNRSSCGRWRPP-PHQWVKCNTDATWNRD 439

Query: 316  SGWAGAGAIASNSEGGMVGAAVRRF-KA*DIGEAEMGAADLAILLARQLNYDRYVVEGDN 140
            +   G G +  N +G +     R   K   + EAE+ A   A+L   +  Y+  + E D+
Sbjct: 440  NERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDS 499

Query: 139  LEVMKALQGAACPWQLEVLKSHILFLVQVFNSCTFNWISRVFN 11
              +++ L        L+     +  L+  F    F +I R  N
Sbjct: 500  QVLIEILNNDEIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGN 542


>emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group]
            gi|38346911|emb|CAE03883.2| OSJNBb0015N08.11 [Oryza
            sativa Japonica Group]
          Length = 1026

 Score = 85.1 bits (209), Expect = 3e-14
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 4/174 (2%)
 Frame = -2

Query: 1006 DKMVWAMERSGKLTVKSTYDFLRNKKCEKGQSSNVNYKTIKHMWAAPLPYSLQLFIWKVY 827
            DK+ W + + GK TV+S Y  L+ +     Q+S  N    K +W   +P  +++FIW   
Sbjct: 811  DKLWWTLSKDGKFTVRSFYRALKLQ-----QTSFPN----KKIWKFRVPLKIRIFIWFFT 861

Query: 826  MHVLPLGDRLTEKNM-KGDFSCPFCSKELETAEHLFFTCDWTRTVWFSSQVGLRITPTQQ 650
             + +   D L ++   KGD  C FC K +ET +HLFF C   R +W      L + P   
Sbjct: 862  KNKILTKDNLLKRGWRKGDNKCQFCDK-VETVQHLFFDCPLARLIWNIIACALNVKP--- 917

Query: 649  PHSLRGRMELYLSWCNSKD---RDLCLAGTHIMYLLQHIWRSRNEMKFEKRTAN 497
               +  R +L+ SW  S D   ++L + G  I  +L  IW+ RN+  FE++  N
Sbjct: 918  ---VLSRQDLFGSWIQSMDKFTKNLVIVG--IAAVLWSIWKCRNKACFERKLPN 966