BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021392
         (615 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ...    75   7e-12
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    75   7e-12
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    75   1e-11
emb|CAB75484.1| putative protein [Arabidopsis thaliana]                69   7e-10
ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia...    68   1e-09

>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
           reverse transcriptase [Arabidopsis thaliana]
           gi|332641254|gb|AEE74775.1| RNase H domain-containing
           protein [Arabidopsis thaliana]
          Length = 484

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 3/189 (1%)
 Frame = +3

Query: 39  LWAAPLPSYLQMFLWKLYMHVLPLGDRLAEKNMKGDFSCPFCNREMETAEHLFFTCDWTR 218
           +W  P+   L+ FLW+     L   +RL  + M+ D SCP C+RE E+  H  FTC +  
Sbjct: 162 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFAT 221

Query: 219 TVWFCSQVGLRINTTQQPHGLRNRIELYLSWCTSKDRDQCMAGTHIM---YLLHYIWRAR 389
             W  S   L  N       + N  E  +S   +  +D  M+  H +   +L+  IW+AR
Sbjct: 222 MAWRLSDSSLIRNQL-----MSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKAR 276

Query: 390 NELKFDKRNANRDRIIRQSRVMADKCLDAFREDSLSFQLPSNLSKNSLEKLFPEIPIDSI 569
           N + F+K   +  + +  ++      L+A +    +      +++N +E   P  P   +
Sbjct: 277 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNP--PATYV 334

Query: 570 VIRFDASYD 596
              FDA +D
Sbjct: 335 KCNFDAGFD 343


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 3/189 (1%)
 Frame = +3

Query: 39   LWAAPLPSYLQMFLWKLYMHVLPLGDRLAEKNMKGDFSCPFCNREMETAEHLFFTCDWTR 218
            +W  P+   L+ FLW+     L   +RL  + M+ D SCP C+RE E+  H  FTC +  
Sbjct: 1428 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFAT 1487

Query: 219  TVWFCSQVGLRINTTQQPHGLRNRIELYLSWCTSKDRDQCMAGTHIM---YLLHYIWRAR 389
              W  S   L  N       + N  E  +S   +  +D  M+  H +   +L+  IW+AR
Sbjct: 1488 MAWRLSDSSLIRNQL-----MSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKAR 1542

Query: 390  NELKFDKRNANRDRIIRQSRVMADKCLDAFREDSLSFQLPSNLSKNSLEKLFPEIPIDSI 569
            N + F+K   +  + +  ++      L+A +    +      +++N +E   P  P   +
Sbjct: 1543 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNP--PATYV 1600

Query: 570  VIRFDASYD 596
               FDA +D
Sbjct: 1601 KCNFDAGFD 1609


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 3/189 (1%)
 Frame = +3

Query: 39   LWAAPLPSYLQMFLWKLYMHVLPLGDRLAEKNMKGDFSCPFCNREMETAEHLFFTCDWTR 218
            +W  P+   L+ FLW+     L   +RL  + M+ D  CP C+RE E+  H  FTC +  
Sbjct: 1202 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFAT 1261

Query: 219  TVWFCSQVGLRINTTQQPHGLRNRIELYLSWCTSKDRDQCMAGTHIM---YLLHYIWRAR 389
              W+ S   L  N       + N  E  +S   +  +D  M+  H +   +L+  IW+AR
Sbjct: 1262 MAWWLSDSSLIRNQL-----MSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKAR 1316

Query: 390  NELKFDKRNANRDRIIRQSRVMADKCLDAFREDSLSFQLPSNLSKNSLEKLFPEIPIDSI 569
            N + F+K   +  + +  ++      L+A +    +      +++N +E   P  P   +
Sbjct: 1317 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNP--PATYV 1374

Query: 570  VIRFDASYD 596
               FDA +D
Sbjct: 1375 KCNFDAGFD 1383


>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 7/193 (3%)
 Frame = +3

Query: 39   LWAAPLPSYLQMFLWKLYMHVLPLGDRLAEKNMKGDFSCPFCNREMETAEHLFFTCDWTR 218
            +W  P+   L+ FLW++    LP  DRL  + M+ D  CP C RE E+  H  FTC +  
Sbjct: 667  IWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFAT 726

Query: 219  TVWFCSQVGLRINTTQQPHGLRNRIE-------LYLSWCTSKDRDQCMAGTHIMYLLHYI 377
              W  S   L  ++      L N IE       L L   T  D  + +      +LL  I
Sbjct: 727  MAWRLSDTPLYRSSI-----LSNNIEDNISNILLLLQNTTITDSQKLIP----FWLLWRI 777

Query: 378  WRARNELKFDKRNANRDRIIRQSRVMADKCLDAFREDSLSFQLPSNLSKNSLEKLFPEIP 557
            W+ARN + F+    +    + +++   ++ L+A +            +  +   + P++P
Sbjct: 778  WKARNNVVFNNLRESPSITVVRAKAETNEWLNATQTQGPRRLPKRTTAAGNTTWVKPQMP 837

Query: 558  IDSIVIRFDASYD 596
               I   FDAS++
Sbjct: 838  Y--IKCNFDASFN 848


>ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
 Frame = +3

Query: 39  LWAAPLPSYLQMFLWKLYMHVLPLGDRLAEKNMKGDFSCPFCNREMETAEHLFFTCDWTR 218
           +W       ++ FLWKL    L  GD L  ++++    C  C +E ET++HLFF C + +
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77

Query: 219 TVWFCSQV-GLRINTTQQPHGLRNRIELYLSWCTSKDRDQCMAGTHIMYLLHYIWRARNE 395
            VW  S +    + TT     +  ++EL LS C +  + Q       +++L  +W++RN+
Sbjct: 78  QVWRASGIPHQELRTTGIT--METKMELLLSSCLANRQPQLF--NLAIWILWRLWKSRNQ 133

Query: 396 LKFDKRNANRDRIIRQSR 449
           L F +++ +    ++++R
Sbjct: 134 LVFQQKSISWQNTLQRAR 151