BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021388
         (490 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|2...   186   2e-45
ref|XP_003623530.1| Pentatricopeptide repeat-containing protein ...   185   4e-45
ref|XP_002533822.1| pentatricopeptide repeat-containing protein,...   183   1e-44
ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containi...   174   5e-42
ref|XP_004137893.1| PREDICTED: pentatricopeptide repeat-containi...   172   3e-41

>ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|222855149|gb|EEE92696.1|
           predicted protein [Populus trichocarpa]
          Length = 506

 Score =  186 bits (472), Expect = 2e-45
 Identities = 88/160 (55%), Positives = 120/160 (75%)
 Frame = +3

Query: 6   ILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKL 185
           +LS +C+ +D +  EV GFLE++R   F P  VDY+NV+ FLVK  +G+DAL ++  MK 
Sbjct: 225 LLSCLCEQKDATKFEVIGFLEQLRKLGFFPGMVDYSNVIRFLVKGKRGLDALHVLNHMKS 284

Query: 186 DRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEA 365
           DRIKPD+  YT VL GVI   D+ KA+E+FDE+LV G+VPD +TYNVY+ GLC QN+ +A
Sbjct: 285 DRIKPDIFCYTMVLHGVIEDKDYLKADELFDELLVFGLVPDAYTYNVYINGLCKQNNVQA 344

Query: 366 GFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVL 485
           G K+VA MEELGCKP++ TYN L+  LCKVG++ +A E++
Sbjct: 345 GIKMVASMEELGCKPNLITYNMLVKQLCKVGELSKAGELV 384


>ref|XP_003623530.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498545|gb|AES79748.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 653

 Score =  185 bits (469), Expect = 4e-45
 Identities = 89/163 (54%), Positives = 121/163 (74%), Gaps = 3/163 (1%)
 Frame = +3

Query: 6   ILSAMCKLQDVSSVE---VWGFLEEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQ 176
           I+S++C+  D++SVE   VWG    MR   F P  +D  N++ FLVK GKGMDAL+++ Q
Sbjct: 224 IISSLCEQNDLTSVEALVVWG---NMRKLGFCPGVMDCTNMIRFLVKEGKGMDALEILNQ 280

Query: 177 MKLDRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNS 356
           +K D IKPD+V YT VL G++  GD+ K +E+FDE+LVLG+VPDV+TYNVY+ GLC QN+
Sbjct: 281 LKEDGIKPDIVCYTIVLSGIVKEGDYVKLDELFDEILVLGLVPDVYTYNVYINGLCKQNN 340

Query: 357 FEAGFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVL 485
           F+   K+V  ME+LGCKP+V TYNTL+GALC  G + +AK V+
Sbjct: 341 FDEALKIVVSMEKLGCKPNVVTYNTLLGALCMSGDLGKAKRVM 383



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 43/156 (27%), Positives = 75/156 (48%)
 Frame = +3

Query: 6   ILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKL 185
           +LS + K  D   V++    +E+      P+   Y   ++ L K     +AL ++  M+ 
Sbjct: 296 VLSGIVKEGDY--VKLDELFDEILVLGLVPDVYTYNVYINGLCKQNNFDEALKIVVSMEK 353

Query: 186 DRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEA 365
              KP+VV Y  +L  +  +GD  KA+ V  EM + GV  ++HTY + L GL  +     
Sbjct: 354 LGCKPNVVTYNTLLGALCMSGDLGKAKRVMKEMRLKGVELNLHTYRIMLDGLVGKGEIGE 413

Query: 366 GFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRA 473
              L+  M E    P  ST+++++  +C+ G +  A
Sbjct: 414 ACVLLEEMLEKCFYPRSSTFDSIVHQMCQKGLISDA 449


>ref|XP_002533822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526239|gb|EEF28557.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 373

 Score =  183 bits (464), Expect = 1e-44
 Identities = 88/160 (55%), Positives = 121/160 (75%)
 Frame = +3

Query: 6   ILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKL 185
           +LS++C   D+SS EV  FL E+R   F P   DY+ V++FLV+ G GM+AL+++ QMKL
Sbjct: 97  LLSSLCYQADISSSEVMRFLGELRKFGFCPGIKDYSKVINFLVRRGMGMEALNVLNQMKL 156

Query: 186 DRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEA 365
           D IKPD+V YT VL+GVI  G + KA+E+FDE+LV G+VPDV+TYNVY+ GLC QN+ EA
Sbjct: 157 DGIKPDIVCYTTVLNGVIANGVYSKADELFDELLVFGLVPDVYTYNVYIYGLCKQNNVEA 216

Query: 366 GFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVL 485
           G ++V  MEELGCKP++ TYN L+  LCK G+  RA++++
Sbjct: 217 GIEMVTSMEELGCKPNLITYNILLEDLCKNGEDSRARDLV 256


>ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Glycine max]
          Length = 499

 Score =  174 bits (442), Expect = 5e-42
 Identities = 80/160 (50%), Positives = 115/160 (71%)
 Frame = +3

Query: 6   ILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKL 185
           ++SA+C+ +D++S E      +MR   F P  +DY N++ FLVK G+GMDALD++ Q K 
Sbjct: 230 VISALCEQKDLTSAEALVVWRDMRKLGFCPGVMDYTNMIRFLVKEGRGMDALDILNQQKQ 289

Query: 186 DRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEA 365
           D IK DVV YT VL G++  G++   +E+FDEMLV+G++PD +TYNVY+ GLC QN+   
Sbjct: 290 DGIKLDVVSYTMVLSGIVAEGEYVMLDELFDEMLVIGLIPDAYTYNVYINGLCKQNNVAE 349

Query: 366 GFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVL 485
             ++VA MEELGCKP+V TYNTL+GAL   G  ++A+E++
Sbjct: 350 ALQIVASMEELGCKPNVVTYNTLLGALSVAGDFVKARELM 389



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 41/139 (29%), Positives = 65/139 (46%)
 Frame = +3

Query: 66  EEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITA 245
           +EM      P+   Y   ++ L K     +AL ++  M+    KP+VV Y  +L  +  A
Sbjct: 320 DEMLVIGLIPDAYTYNVYINGLCKQNNVAEALQIVASMEELGCKPNVVTYNTLLGALSVA 379

Query: 246 GDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSTY 425
           GDF KA E+  EM   GV  ++HTY + L GL  +        L+  M E    P  ST+
Sbjct: 380 GDFVKARELMKEMGWKGVGLNLHTYRIVLDGLVGKGEIGESCLLLEEMLEKCLFPRSSTF 439

Query: 426 NTLMGALCKVGKVMRAKEV 482
           + ++  +C+      A E+
Sbjct: 440 DNIIFQMCQKDLFTEAMEL 458


>ref|XP_004137893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Cucumis sativus]
           gi|449483740|ref|XP_004156675.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Cucumis sativus]
          Length = 491

 Score =  172 bits (435), Expect = 3e-41
 Identities = 80/159 (50%), Positives = 114/159 (71%)
 Frame = +3

Query: 6   ILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKL 185
           IL+++C+ +  S   V GFLEEMR K F P  VDY+NV+ F V  G G DA+DL+ +MK 
Sbjct: 220 ILASLCQQKKSSGDVVLGFLEEMRQKGFCPAVVDYSNVIKFFVTRGMGSDAVDLLNKMKA 279

Query: 186 DRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEA 365
           D  KPD+V YT VL+GVI  GD+  A+E+FDE+L+ G+VPD++TYNVY+ GLC Q    A
Sbjct: 280 DGFKPDIVCYTMVLNGVIADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGDSVA 339

Query: 366 GFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEV 482
           G +++  ME LGC+P+V TYN ++ +LCK G++  A+++
Sbjct: 340 GLQMIPHMEALGCQPNVITYNVILKSLCKTGELDEARKL 378