BLASTX nr result
ID: Coptis24_contig00021388
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00021388 (490 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|2... 186 2e-45 ref|XP_003623530.1| Pentatricopeptide repeat-containing protein ... 185 4e-45 ref|XP_002533822.1| pentatricopeptide repeat-containing protein,... 183 1e-44 ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containi... 174 5e-42 ref|XP_004137893.1| PREDICTED: pentatricopeptide repeat-containi... 172 3e-41 >ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|222855149|gb|EEE92696.1| predicted protein [Populus trichocarpa] Length = 506 Score = 186 bits (472), Expect = 2e-45 Identities = 88/160 (55%), Positives = 120/160 (75%) Frame = +3 Query: 6 ILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKL 185 +LS +C+ +D + EV GFLE++R F P VDY+NV+ FLVK +G+DAL ++ MK Sbjct: 225 LLSCLCEQKDATKFEVIGFLEQLRKLGFFPGMVDYSNVIRFLVKGKRGLDALHVLNHMKS 284 Query: 186 DRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEA 365 DRIKPD+ YT VL GVI D+ KA+E+FDE+LV G+VPD +TYNVY+ GLC QN+ +A Sbjct: 285 DRIKPDIFCYTMVLHGVIEDKDYLKADELFDELLVFGLVPDAYTYNVYINGLCKQNNVQA 344 Query: 366 GFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVL 485 G K+VA MEELGCKP++ TYN L+ LCKVG++ +A E++ Sbjct: 345 GIKMVASMEELGCKPNLITYNMLVKQLCKVGELSKAGELV 384 >ref|XP_003623530.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355498545|gb|AES79748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 653 Score = 185 bits (469), Expect = 4e-45 Identities = 89/163 (54%), Positives = 121/163 (74%), Gaps = 3/163 (1%) Frame = +3 Query: 6 ILSAMCKLQDVSSVE---VWGFLEEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQ 176 I+S++C+ D++SVE VWG MR F P +D N++ FLVK GKGMDAL+++ Q Sbjct: 224 IISSLCEQNDLTSVEALVVWG---NMRKLGFCPGVMDCTNMIRFLVKEGKGMDALEILNQ 280 Query: 177 MKLDRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNS 356 +K D IKPD+V YT VL G++ GD+ K +E+FDE+LVLG+VPDV+TYNVY+ GLC QN+ Sbjct: 281 LKEDGIKPDIVCYTIVLSGIVKEGDYVKLDELFDEILVLGLVPDVYTYNVYINGLCKQNN 340 Query: 357 FEAGFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVL 485 F+ K+V ME+LGCKP+V TYNTL+GALC G + +AK V+ Sbjct: 341 FDEALKIVVSMEKLGCKPNVVTYNTLLGALCMSGDLGKAKRVM 383 Score = 60.5 bits (145), Expect = 1e-07 Identities = 43/156 (27%), Positives = 75/156 (48%) Frame = +3 Query: 6 ILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKL 185 +LS + K D V++ +E+ P+ Y ++ L K +AL ++ M+ Sbjct: 296 VLSGIVKEGDY--VKLDELFDEILVLGLVPDVYTYNVYINGLCKQNNFDEALKIVVSMEK 353 Query: 186 DRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEA 365 KP+VV Y +L + +GD KA+ V EM + GV ++HTY + L GL + Sbjct: 354 LGCKPNVVTYNTLLGALCMSGDLGKAKRVMKEMRLKGVELNLHTYRIMLDGLVGKGEIGE 413 Query: 366 GFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRA 473 L+ M E P ST+++++ +C+ G + A Sbjct: 414 ACVLLEEMLEKCFYPRSSTFDSIVHQMCQKGLISDA 449 >ref|XP_002533822.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223526239|gb|EEF28557.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 373 Score = 183 bits (464), Expect = 1e-44 Identities = 88/160 (55%), Positives = 121/160 (75%) Frame = +3 Query: 6 ILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKL 185 +LS++C D+SS EV FL E+R F P DY+ V++FLV+ G GM+AL+++ QMKL Sbjct: 97 LLSSLCYQADISSSEVMRFLGELRKFGFCPGIKDYSKVINFLVRRGMGMEALNVLNQMKL 156 Query: 186 DRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEA 365 D IKPD+V YT VL+GVI G + KA+E+FDE+LV G+VPDV+TYNVY+ GLC QN+ EA Sbjct: 157 DGIKPDIVCYTTVLNGVIANGVYSKADELFDELLVFGLVPDVYTYNVYIYGLCKQNNVEA 216 Query: 366 GFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVL 485 G ++V MEELGCKP++ TYN L+ LCK G+ RA++++ Sbjct: 217 GIEMVTSMEELGCKPNLITYNILLEDLCKNGEDSRARDLV 256 >ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Glycine max] Length = 499 Score = 174 bits (442), Expect = 5e-42 Identities = 80/160 (50%), Positives = 115/160 (71%) Frame = +3 Query: 6 ILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKL 185 ++SA+C+ +D++S E +MR F P +DY N++ FLVK G+GMDALD++ Q K Sbjct: 230 VISALCEQKDLTSAEALVVWRDMRKLGFCPGVMDYTNMIRFLVKEGRGMDALDILNQQKQ 289 Query: 186 DRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEA 365 D IK DVV YT VL G++ G++ +E+FDEMLV+G++PD +TYNVY+ GLC QN+ Sbjct: 290 DGIKLDVVSYTMVLSGIVAEGEYVMLDELFDEMLVIGLIPDAYTYNVYINGLCKQNNVAE 349 Query: 366 GFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEVL 485 ++VA MEELGCKP+V TYNTL+GAL G ++A+E++ Sbjct: 350 ALQIVASMEELGCKPNVVTYNTLLGALSVAGDFVKARELM 389 Score = 59.7 bits (143), Expect = 2e-07 Identities = 41/139 (29%), Positives = 65/139 (46%) Frame = +3 Query: 66 EEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITA 245 +EM P+ Y ++ L K +AL ++ M+ KP+VV Y +L + A Sbjct: 320 DEMLVIGLIPDAYTYNVYINGLCKQNNVAEALQIVASMEELGCKPNVVTYNTLLGALSVA 379 Query: 246 GDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSTY 425 GDF KA E+ EM GV ++HTY + L GL + L+ M E P ST+ Sbjct: 380 GDFVKARELMKEMGWKGVGLNLHTYRIVLDGLVGKGEIGESCLLLEEMLEKCLFPRSSTF 439 Query: 426 NTLMGALCKVGKVMRAKEV 482 + ++ +C+ A E+ Sbjct: 440 DNIIFQMCQKDLFTEAMEL 458 >ref|XP_004137893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucumis sativus] gi|449483740|ref|XP_004156675.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucumis sativus] Length = 491 Score = 172 bits (435), Expect = 3e-41 Identities = 80/159 (50%), Positives = 114/159 (71%) Frame = +3 Query: 6 ILSAMCKLQDVSSVEVWGFLEEMRAKRFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKL 185 IL+++C+ + S V GFLEEMR K F P VDY+NV+ F V G G DA+DL+ +MK Sbjct: 220 ILASLCQQKKSSGDVVLGFLEEMRQKGFCPAVVDYSNVIKFFVTRGMGSDAVDLLNKMKA 279 Query: 186 DRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEA 365 D KPD+V YT VL+GVI GD+ A+E+FDE+L+ G+VPD++TYNVY+ GLC Q A Sbjct: 280 DGFKPDIVCYTMVLNGVIADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGDSVA 339 Query: 366 GFKLVACMEELGCKPDVSTYNTLMGALCKVGKVMRAKEV 482 G +++ ME LGC+P+V TYN ++ +LCK G++ A+++ Sbjct: 340 GLQMIPHMEALGCQPNVITYNVILKSLCKTGELDEARKL 378