BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021307
         (1429 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277344.2| PREDICTED: uncharacterized protein LOC100257...   197   4e-48
ref|XP_002516201.1| DNA-directed RNA polymerase beta chain, puta...   144   7e-32
ref|XP_002326150.1| predicted protein [Populus trichocarpa] gi|2...   140   8e-31
emb|CBI27747.3| unnamed protein product [Vitis vinifera]              134   8e-29
gb|AFW71893.1| putative HLH DNA-binding domain superfamily prote...    97   1e-17

>ref|XP_002277344.2| PREDICTED: uncharacterized protein LOC100257707 [Vitis vinifera]
          Length = 536

 Score =  197 bits (502), Expect = 4e-48
 Identities = 136/356 (38%), Positives = 187/356 (52%), Gaps = 14/356 (3%)
 Frame = +1

Query: 373  MDEFLDQFLSSSPWSDVKAPERSSWI------GNGLLFDTMGAYGEDEENITQSLIPSSL 534
            MDE+LD   SS+ WSDV   E SSWI       NG+L D++G Y  D++N    +  S+L
Sbjct: 1    MDEYLDHLFSSTSWSDVNVKEGSSWICGEPSQTNGMLSDSIGIYEGDKKNSPVGMTNSNL 60

Query: 535  IVDNLITQKTSDFA-SEDSSFDLEKSLRSGESKPREGGTGHGSKLSLLGVLDGNPKPSYL 711
            +++ L+TQ TS      +S   L K L   E+  ++         SL G ++G+ +  Y+
Sbjct: 61   MIEGLVTQDTSSIVLGGESDHGLGKGLLLEEAPRQQDLQNTEGNSSLNGAVNGSSEVGYV 120

Query: 712  DMQSNTSSTLGA---LNQPEITPVLVDPANSSSVQPESGSVGSNDSELSEIHPPIIDSHC 882
             +Q NT ++      L  P+   ++   + SS    E   VG N +E S+    + +   
Sbjct: 121  GLQLNTPTSTPCSLDLGSPKQLSLIGGMSRSSRPFTELDHVGCNGNEPSDFQRSVGNFQA 180

Query: 883  RSSVPQLWP-PSYRGVSSLFPVVGQDKPQGFGLQRQYVETDAAVLGSKYFNDTIQQ-GNL 1056
               +PQLW  PSY G SSL PV+G+ K QGFGLQ +YV+ +  ++ ++Y  D I Q  N+
Sbjct: 181  LPPIPQLWSQPSYGGGSSLSPVMGEYKMQGFGLQGEYVDNEMDIMRNRYVGDEILQLDNI 240

Query: 1057 PASLP--EQNEMNNHYMCSFAAGHQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQTPIPQ 1230
             +++P   + E + H     A G           H  M  S L              +PQ
Sbjct: 241  SSAIPIKGKEEQHTHPFSPSAVGP----------HMTMTASGLQS------------LPQ 278

Query: 1231 LPHTPNTASGDCNGAAKHRVRARRGQATDPHSIAERLRREKIAERMKNLQATDPHS 1398
               T  TASG CNG  K RVRARRGQATDPHSIAERLRREKIAERMKNLQ   P+S
Sbjct: 279  T--TVGTASGGCNGTGKPRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNS 332


>ref|XP_002516201.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
            gi|223544687|gb|EEF46203.1| DNA-directed RNA polymerase
            beta chain, putative [Ricinus communis]
          Length = 592

 Score =  144 bits (362), Expect = 7e-32
 Identities = 127/357 (35%), Positives = 182/357 (50%), Gaps = 14/357 (3%)
 Frame = +1

Query: 370  VMDEFLDQFLSSSPWSDVKAPERSSWIG------NGLLFDTMGAYGEDEENITQSLIPSS 531
            VMDE++D+  SSSPW+D  A ERS W        N  +  ++  +  D+ N   S+  S 
Sbjct: 58   VMDEYIDRLFSSSPWADGDAKERSCWDYSETGQLNVSVSTSLRLHENDKGNSLLSVTSSE 117

Query: 532  LIVDNLITQKTSDFASE-DSSFDLEKSLRSGESKPREGGTGHGSKLSLLGVLDGNPKPSY 708
              +D L  Q T     + +S + ++K L SG+++ ++ G       S +  ++G+ K   
Sbjct: 118  QNIDCLPAQDTPSLGLDSESDYVVDKGLFSGKAQSQKEGQNCNHDPSPM--INGSLKMKN 175

Query: 709  LDMQSNTS-STLGA--LNQPEITPVLVDPANSSSVQPESGSVGSNDSELSEIHPPIIDSH 879
            + +Q +T+  TL +  L+  +  PVL D  +  S   ++   G NDS   E      D  
Sbjct: 176  MGLQYDTALPTLNSVGLSYSKQLPVLDDLTSPLSFT-KANRAGLNDSARFEYQRSFKDVQ 234

Query: 880  CRSSVPQLWPP-SYRGVSSLFPVVGQDKPQGFGLQRQYVETDAAVLGSKYFN--DTIQQG 1050
              SS+ QLWP  S+  VSSL   +GQD  Q F LQ    + D   LG +Y +  + +Q  
Sbjct: 235  NPSSMTQLWPSTSFEDVSSLSAAMGQDTTQQFDLQGNLGD-DLDFLGRRYISMDNILQLD 293

Query: 1051 NLPASLPEQNEMNNHYMCSFAAGHQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQTPIPQ 1230
             L AS+  +++ N         G+  PL R   + S M ++  T G           +  
Sbjct: 294  KLSASVVSKDKEN-------LQGY--PLSRFT-VGSNMTMT--TNG-----------VSY 330

Query: 1231 LPHTPNTA-SGDCNGAAKHRVRARRGQATDPHSIAERLRREKIAERMKNLQATDPHS 1398
            L  T +TA +  CNG  K RVRARRGQATDPHSIAERLRREKIAERMKNLQ   P+S
Sbjct: 331  LSQTASTAPAASCNGTGKPRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNS 387


>ref|XP_002326150.1| predicted protein [Populus trichocarpa] gi|222833343|gb|EEE71820.1|
            predicted protein [Populus trichocarpa]
          Length = 456

 Score =  140 bits (353), Expect = 8e-31
 Identities = 107/299 (35%), Positives = 154/299 (51%), Gaps = 5/299 (1%)
 Frame = +1

Query: 517  LIPSSLIVDNLITQKTSDFA-SEDSSFDLEKSLRSGESKPREGGTGHGSKLSLLGVLDGN 693
            +I S+  V++L TQ TS      +S + ++K L S +++ +          S  G+  GN
Sbjct: 1    MISSNQSVESLATQDTSSVVLGSESDYAVDKVLISEQARLQNDCQNCNGNPSPDGMARGN 60

Query: 694  PKPSYLDMQSN-TSSTLGALNQPEITPVLVDPANSSSVQPESGSVGSNDSELSEIHPPII 870
             K     +Q N    TL +LN P   P++ D  +  S   E+ + G N  E SE    + 
Sbjct: 61   LKFGNTGLQCNGILPTLSSLNYPNQLPIVGDLTSYLSFS-EASNAGCNGREQSEYLRSLK 119

Query: 871  DSHCRSSVPQLWPP-SYRGVSSLFPVVGQDKPQGFGLQRQYVETDAAVLGSKYFN-DTIQ 1044
            +    SS+PQLWP  SY GVSSL P++GQD+ +G GL+   ++ D  ++G  Y   D I 
Sbjct: 120  NLQNLSSIPQLWPSQSYEGVSSLPPLMGQDRIEGSGLRGGNLDDDMHIMGKGYMGMDEIL 179

Query: 1045 QGNLPASLPEQNEMNNHYMCSFAAGHQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQTPI 1224
            + +  ++ P      +   C F++G        AE +  M ++ L+              
Sbjct: 180  RLDKLSASPTTEGKEDLQSCPFSSG-------IAEPNVNMSMNQLSS------------- 219

Query: 1225 PQLPHTPNTASGD-CNGAAKHRVRARRGQATDPHSIAERLRREKIAERMKNLQATDPHS 1398
              +P T + A  + CNG  K RVRARRG ATDPHSIAERLRREKIAERMKNLQ   P+S
Sbjct: 220  --MPQTTSAAPVEGCNGTGKTRVRARRGHATDPHSIAERLRREKIAERMKNLQELVPNS 276


>emb|CBI27747.3| unnamed protein product [Vitis vinifera]
          Length = 389

 Score =  134 bits (336), Expect = 8e-29
 Identities = 90/208 (43%), Positives = 113/208 (54%), Gaps = 4/208 (1%)
 Frame = +1

Query: 787  ANSSSVQPESGSVGSNDSELSEIHPPIIDSHCRSSVPQLWP-PSYRGVSSLFPVVGQDKP 963
            + SS    E   VG N +E S+    + +      +PQLW  PSY G SSL PV+G+ K 
Sbjct: 2    SRSSRPFTELDHVGCNGNEPSDFQRSVGNFQALPPIPQLWSQPSYGGGSSLSPVMGEYKM 61

Query: 964  QGFGLQRQYVETDAAVLGSKYFNDTIQQ-GNLPASLP--EQNEMNNHYMCSFAAGHQIPL 1134
            QGFGLQ +YV+ +  ++ ++Y  D I Q  N+ +++P   + E + H     A G     
Sbjct: 62   QGFGLQGEYVDNEMDIMRNRYVGDEILQLDNISSAIPIKGKEEQHTHPFSPSAVGP---- 117

Query: 1135 GRTAEIHSQMQLSYLTGGNSIKHYADQTPIPQLPHTPNTASGDCNGAAKHRVRARRGQAT 1314
                  H  M  S L              +PQ   T  TASG CNG  K RVRARRGQAT
Sbjct: 118  ------HMTMTASGLQS------------LPQT--TVGTASGGCNGTGKPRVRARRGQAT 157

Query: 1315 DPHSIAERLRREKIAERMKNLQATDPHS 1398
            DPHSIAERLRREKIAERMKNLQ   P+S
Sbjct: 158  DPHSIAERLRREKIAERMKNLQELVPNS 185


>gb|AFW71893.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
          Length = 489

 Score = 96.7 bits (239), Expect = 1e-17
 Identities = 86/248 (34%), Positives = 113/248 (45%), Gaps = 18/248 (7%)
 Frame = +1

Query: 709  LDMQSNTSSTLGALNQPEITPVLVDPANSSSVQPESGSVGSNDSELSEIHPPIIDSHCRS 888
            L  + N++   G L      P  V  A+S+ V   S +  S  SE S + PP        
Sbjct: 95   LGFEVNSALVAGMLGPVLSAPCAVSLADSAPVVCSSSNDSSGGSEQSGLPPPP-RFLVLG 153

Query: 889  SVPQLWPPSYRGVSSLFPVVGQDKPQGFGLQRQYVETDAAVLGSKYFNDTI---QQGNLP 1059
              P  WP ++  +SSL    G++  + FG     V  +  V GS    D     Q GN  
Sbjct: 154  EQPASWPSAFPRISSL---AGEETSRSFGFGA--VSDNDLVRGSSCVADVNKYPQIGNAR 208

Query: 1060 ASLPEQNEMNNHYMCSFAAG--------HQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQ 1215
              + +  E N   M SFA G         Q  L     ++S  QLS      + +  +++
Sbjct: 209  LHVEDDVEFNTGKMLSFAPGLDFGDLQLSQKELSGLRHLNSGQQLSSFDATRNPEQSSNE 268

Query: 1216 TP-------IPQLPHTPNTASGDCNGAAKHRVRARRGQATDPHSIAERLRREKIAERMKN 1374
                      P      N A+G  NGA K RVRARRGQATDPHSIAERLRREKI++RMKN
Sbjct: 269  ASGGGTGLNAPPFMVPANGAAG--NGAPKPRVRARRGQATDPHSIAERLRREKISDRMKN 326

Query: 1375 LQATDPHS 1398
            LQ   P+S
Sbjct: 327  LQELVPNS 334