BLASTX nr result
ID: Coptis24_contig00021294
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00021294
(230 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003609609.1| Pentatricopeptide repeat-containing protein ... 78 8e-17
ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containi... 74 2e-15
ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containi... 70 5e-15
ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containi... 70 5e-15
ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containi... 73 7e-15
>ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510664|gb|AES91806.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 576
Score = 77.8 bits (190), Expect(2) = 8e-17
Identities = 33/52 (63%), Positives = 42/52 (80%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WN M+ GYAKAG +RA +LF MP+RN ASWN+MI+GY DCG++ EAR+LF
Sbjct: 204 WNCMVSGYAKAGKMDRACYLFQQMPERNFASWNTMITGYVDCGSIVEARELF 255
Score = 33.9 bits (76), Expect(2) = 8e-17
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -1
Query: 74 LFNEMPERSNVS*IAMISGYSRSG 3
LF+ MP R++VS I MI+GYS+SG
Sbjct: 254 LFDAMPRRNSVSLITMIAGYSKSG 277
Score = 53.5 bits (127), Expect(2) = 5e-07
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WNS++ GY K G+ + F +P ++ SWN M+SGYA G M+ A LF
Sbjct: 173 WNSLLSGYIKGGNLDEGQRFFDEIPLKDVISWNCMVSGYAKAGKMDRACYLF 224
Score = 25.0 bits (53), Expect(2) = 5e-07
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 74 LFNEMPERSNVS*IAMISGYSRSG 3
LF +MPER+ S MI+GY G
Sbjct: 223 LFQQMPERNFASWNTMITGYVDCG 246
Score = 51.6 bits (122), Expect(2) = 8e-07
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = -3
Query: 207 YAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
Y K GD A +F MPD+N SWNS++SGY GN++E ++ F
Sbjct: 149 YCKIGDVVTARKVFDEMPDKNVVSWNSLLSGYIKGGNLDEGQRFF 193
Score = 26.2 bits (56), Expect(2) = 8e-07
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 86 QGSCLFNEMPERSNVS*IAMISGYSRSG 3
+G F+E+P + +S M+SGY+++G
Sbjct: 188 EGQRFFDEIPLKDVISWNCMVSGYAKAG 215
>ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
gi|296083555|emb|CBI23551.3| unnamed protein product
[Vitis vinifera]
Length = 580
Score = 73.6 bits (179), Expect(2) = 2e-15
Identities = 32/52 (61%), Positives = 40/52 (76%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WNSMI GYA+AGD E+A LF MP+RN ASWN+MISGY + G+++ AR F
Sbjct: 208 WNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFF 259
Score = 33.1 bits (74), Expect(2) = 2e-15
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -1
Query: 71 FNEMPERSNVS*IAMISGYSRSG 3
F+ MP+R+NVS + MISGYS+ G
Sbjct: 259 FDAMPQRNNVSWMTMISGYSKCG 281
Score = 63.2 bits (152), Expect(2) = 9e-11
Identities = 28/52 (53%), Positives = 36/52 (69%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WNSM+ GY K+GD A +F +P ++ SWNSMISGYA G+ME+A LF
Sbjct: 177 WNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLF 228
Score = 28.1 bits (61), Expect(2) = 9e-11
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 74 LFNEMPERSNVS*IAMISGYSRSG 3
LF +MPER+ S AMISGY G
Sbjct: 227 LFQQMPERNFASWNAMISGYVEFG 250
Score = 62.4 bits (150), Expect = 4e-08
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WN+MI GY + GD + A F MP RN+ SW +MISGY+ CG+++ A +LF
Sbjct: 239 WNAMISGYVEFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELF 290
Score = 47.4 bits (111), Expect(2) = 3e-06
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = -3
Query: 207 YAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
Y K GD E A +F M +RN SWNSM++GY G++ A+++F
Sbjct: 153 YCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVF 197
Score = 28.5 bits (62), Expect(2) = 3e-06
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = -1
Query: 74 LFNEMPERSNVS*IAMISGYSRSG 3
+F+E+P++ +S +MISGY+R+G
Sbjct: 196 VFDEIPQKDVISWNSMISGYARAG 219
>ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 70.1 bits (170), Expect(2) = 5e-15
Identities = 27/52 (51%), Positives = 40/52 (76%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WN+MI GY ++ E+A LF MP RN++SWN+M++GYA CGN+++A+ LF
Sbjct: 311 WNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILF 362
Score = 35.4 bits (80), Expect(2) = 5e-15
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = -1
Query: 86 QGSCLFNEMPERSNVS*IAMISGYSRSG 3
Q LF+EMP+R +S AMISGY++SG
Sbjct: 357 QAKILFDEMPQRDCISWAAMISGYAQSG 384
Score = 54.3 bits (129), Expect(2) = 6e-09
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
+N+MI GY F+ A +F MPDR+ SWN M+SGY GN+ AR LF
Sbjct: 94 YNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALF 145
Score = 30.8 bits (68), Expect(2) = 6e-09
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -1
Query: 74 LFNEMPERSNVS*IAMISGYSRSG 3
LFN+MPE+ VS AM+SG++++G
Sbjct: 144 LFNQMPEKDVVSWNAMLSGFAQNG 167
Score = 62.4 bits (150), Expect = 4e-08
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLFV 70
WN+M+ GYA+ G+ ++A LF MP R+ SW +MISGYA G EEA LF+
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFI 394
Score = 55.8 bits (133), Expect(2) = 6e-08
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
W +M+ G+ + G + A +F MP++N SWN+MI+GY +E+AR+LF
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELF 331
Score = 52.4 bits (124), Expect(2) = 6e-08
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WN ++ GY + + A LF MP R+ SWN MI+GYA G + EAR+LF
Sbjct: 218 WNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLF 269
Score = 29.3 bits (64), Expect(2) = 6e-08
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1
Query: 74 LFNEMPERSNVS*IAMISGYSRS 6
+F EMPE++ VS AMI+GY +S
Sbjct: 299 IFEEMPEKNEVSWNAMIAGYVQS 321
Score = 25.8 bits (55), Expect(2) = 6e-08
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 74 LFNEMPERSNVS*IAMISGYSRSG 3
LF++MP R+ S M++GY++ G
Sbjct: 330 LFDQMPSRNTSSWNTMVTGYAQCG 353
Score = 60.8 bits (146), Expect = 1e-07
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WN M+ GY K G+ A LF MP+++ SWN+M+SG+A G +EEARK+F
Sbjct: 125 WNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176
Score = 52.8 bits (125), Expect(2) = 3e-07
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WN+M+ G+A+ G E A +F M +N SWN ++S Y G +E+AR+LF
Sbjct: 156 WNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLF 207
Score = 26.6 bits (57), Expect(2) = 3e-07
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 74 LFNEMPERSNVS*IAMISGYSRSG 3
LF+ MP R +S MI+GY+++G
Sbjct: 237 LFDRMPVRDKISWNIMITGYAQNG 260
>ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 70.1 bits (170), Expect(2) = 5e-15
Identities = 27/52 (51%), Positives = 40/52 (76%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WN+MI GY ++ E+A LF MP RN++SWN+M++GYA CGN+++A+ LF
Sbjct: 311 WNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILF 362
Score = 35.4 bits (80), Expect(2) = 5e-15
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = -1
Query: 86 QGSCLFNEMPERSNVS*IAMISGYSRSG 3
Q LF+EMP+R +S AMISGY++SG
Sbjct: 357 QAKILFDEMPQRDCISWAAMISGYAQSG 384
Score = 54.3 bits (129), Expect(2) = 6e-09
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
+N+MI GY F+ A +F MPDR+ SWN M+SGY GN+ AR LF
Sbjct: 94 YNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALF 145
Score = 30.8 bits (68), Expect(2) = 6e-09
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -1
Query: 74 LFNEMPERSNVS*IAMISGYSRSG 3
LFN+MPE+ VS AM+SG++++G
Sbjct: 144 LFNQMPEKDVVSWNAMLSGFAQNG 167
Score = 62.4 bits (150), Expect = 4e-08
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLFV 70
WN+M+ GYA+ G+ ++A LF MP R+ SW +MISGYA G EEA LF+
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFI 394
Score = 55.8 bits (133), Expect(2) = 6e-08
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
W +M+ G+ + G + A +F MP++N SWN+MI+GY +E+AR+LF
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELF 331
Score = 52.4 bits (124), Expect(2) = 6e-08
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WN ++ GY + + A LF MP R+ SWN MI+GYA G + EAR+LF
Sbjct: 218 WNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLF 269
Score = 29.3 bits (64), Expect(2) = 6e-08
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1
Query: 74 LFNEMPERSNVS*IAMISGYSRS 6
+F EMPE++ VS AMI+GY +S
Sbjct: 299 IFEEMPEKNEVSWNAMIAGYVQS 321
Score = 25.8 bits (55), Expect(2) = 6e-08
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 74 LFNEMPERSNVS*IAMISGYSRSG 3
LF++MP R+ S M++GY++ G
Sbjct: 330 LFDQMPSRNTSSWNTMVTGYAQCG 353
Score = 60.8 bits (146), Expect = 1e-07
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WN M+ GY K G+ A LF MP+++ SWN+M+SG+A G +EEARK+F
Sbjct: 125 WNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176
Score = 52.8 bits (125), Expect(2) = 3e-07
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WN+M+ G+A+ G E A +F M +N SWN ++S Y G +E+AR+LF
Sbjct: 156 WNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLF 207
Score = 26.6 bits (57), Expect(2) = 3e-07
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 74 LFNEMPERSNVS*IAMISGYSRSG 3
LF+ MP R +S MI+GY+++G
Sbjct: 237 LFDRMPVRDKISWNIMITGYAQNG 260
>ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 73.2 bits (178), Expect(2) = 7e-15
Identities = 31/52 (59%), Positives = 41/52 (78%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WNSMI GYA+AGD E+A+ LF MP+RN ASWN+MISG+ + G+++ AR F
Sbjct: 208 WNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFF 259
Score = 32.0 bits (71), Expect(2) = 7e-15
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -1
Query: 71 FNEMPERSNVS*IAMISGYSRSG 3
F+ MP+++NVS + MISGYS+ G
Sbjct: 259 FDAMPQKNNVSWMTMISGYSKCG 281
Score = 63.5 bits (153), Expect(2) = 9e-11
Identities = 28/52 (53%), Positives = 36/52 (69%)
Frame = -3
Query: 228 WNSMILGYAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
WNSM+ GY K+GD A +F +P ++ SWNSMISGYA G+ME+A LF
Sbjct: 177 WNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLF 228
Score = 27.7 bits (60), Expect(2) = 9e-11
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 86 QGSCLFNEMPERSNVS*IAMISGYSRSG 3
+ S LF +MPER+ S AMISG+ G
Sbjct: 223 KASSLFQQMPERNFASWNAMISGHVEFG 250
Score = 47.4 bits (111), Expect(2) = 3e-06
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = -3
Query: 207 YAKAGDFERANHLFAHMPDRNSASWNSMISGYADCGNMEEARKLF 73
Y K GD E A +F M +RN SWNSM++GY G++ A+++F
Sbjct: 153 YCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVF 197
Score = 28.5 bits (62), Expect(2) = 3e-06
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = -1
Query: 74 LFNEMPERSNVS*IAMISGYSRSG 3
+F+E+P++ +S +MISGY+R+G
Sbjct: 196 VFDEIPQKDVISWNSMISGYARAG 219