BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021220
         (1585 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273719.1| PREDICTED: pentatricopeptide repeat-containi...   455   e-125
emb|CBI38862.3| unnamed protein product [Vitis vinifera]              450   e-124
ref|XP_002320730.1| predicted protein [Populus trichocarpa] gi|2...   398   e-108
ref|XP_004134345.1| PREDICTED: pentatricopeptide repeat-containi...   390   e-106
ref|XP_003533639.1| PREDICTED: pentatricopeptide repeat-containi...   381   e-103

>ref|XP_002273719.1| PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like
            [Vitis vinifera]
          Length = 352

 Score =  455 bits (1171), Expect = e-125
 Identities = 233/346 (67%), Positives = 275/346 (79%)
 Frame = +3

Query: 9    QKKYKWIKIGPNISEAQEKAISQLPPKMSKRDKAFMKQIICFDYSEKNGVTLSSILRSWV 188
            +K+YKWI+IGPNI+EAQ+  ISQ+  KM+KR KA +KQIICF   E++   LS +L +WV
Sbjct: 6    KKRYKWIEIGPNITEAQKMTISQISLKMTKRCKALVKQIICFSPEERS---LSDLLAAWV 62

Query: 189  KIMKPRRADWLLVLKEMSKLEVPLVSEVTEYALLEDSFEANIRDYTKLIDGYAKQNRLHD 368
            KIMKPRRADWL VLKE+ +L+ PL+ EV E ALLE+SFEANIRDYTK+IDGY KQNRL D
Sbjct: 63   KIMKPRRADWLSVLKELGRLDHPLLLEVAELALLEESFEANIRDYTKIIDGYGKQNRLQD 122

Query: 369  AEITLQAMKKRGFTCDQITLTVLINMYSKAGSLEQAEEIFEELKLLGLPLDKRAYGAMIM 548
            AE TL AMK+RGF CDQ+TLT +INMYSKAG+LE AE+ FEE+KLLG PLDKR+YG+MIM
Sbjct: 123  AENTLSAMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEIKLLGHPLDKRSYGSMIM 182

Query: 549  AYVRAGMPDRGEILLGEMEAQEIYAGKEVYKALLRAYSTLGNTLGAQRVFDAIQFARISP 728
            AY+RAGMPD+GEIL+ EMEA+EIYAG+EVYKALLRAYS   +  GAQRVFDAIQFA ISP
Sbjct: 183  AYIRAGMPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDAEGAQRVFDAIQFAGISP 242

Query: 729  DVKLCALLINAHRVAGQSDGARRVFENMRRAGLTPSDKCVALILAAYXXXXXXXXXXXXX 908
            DVKLCALLINA+RVAGQ+  A   FENMRR+GL P+DK +AL+LAAY             
Sbjct: 243  DVKLCALLINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALMLAAYEKENKLNKALDFL 302

Query: 909  XXXXXXNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAAKEIKCE 1046
                    VLGKE SE+L  WF+RLGVV EV LVL+EY+AKE  CE
Sbjct: 303  IDLERDGIVLGKEASELLAAWFQRLGVVKEVELVLREYSAKEASCE 348


>emb|CBI38862.3| unnamed protein product [Vitis vinifera]
          Length = 353

 Score =  450 bits (1158), Expect = e-124
 Identities = 231/342 (67%), Positives = 273/342 (79%)
 Frame = +3

Query: 9    QKKYKWIKIGPNISEAQEKAISQLPPKMSKRDKAFMKQIICFDYSEKNGVTLSSILRSWV 188
            +K+YKWI+IGPNI+EAQ+  ISQ+  KM+KR KA +KQIICF   E++   LS +L +WV
Sbjct: 6    KKRYKWIEIGPNITEAQKMTISQISLKMTKRCKALVKQIICFSPEERS---LSDLLAAWV 62

Query: 189  KIMKPRRADWLLVLKEMSKLEVPLVSEVTEYALLEDSFEANIRDYTKLIDGYAKQNRLHD 368
            KIMKPRRADWL VLKE+ +L+ PL+ EV E ALLE+SFEANIRDYTK+IDGY KQNRL D
Sbjct: 63   KIMKPRRADWLSVLKELGRLDHPLLLEVAELALLEESFEANIRDYTKIIDGYGKQNRLQD 122

Query: 369  AEITLQAMKKRGFTCDQITLTVLINMYSKAGSLEQAEEIFEELKLLGLPLDKRAYGAMIM 548
            AE TL AMK+RGF CDQ+TLT +INMYSKAG+LE AE+ FEE+KLLG PLDKR+YG+MIM
Sbjct: 123  AENTLSAMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEIKLLGHPLDKRSYGSMIM 182

Query: 549  AYVRAGMPDRGEILLGEMEAQEIYAGKEVYKALLRAYSTLGNTLGAQRVFDAIQFARISP 728
            AY+RAGMPD+GEIL+ EMEA+EIYAG+EVYKALLRAYS   +  GAQRVFDAIQFA ISP
Sbjct: 183  AYIRAGMPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDAEGAQRVFDAIQFAGISP 242

Query: 729  DVKLCALLINAHRVAGQSDGARRVFENMRRAGLTPSDKCVALILAAYXXXXXXXXXXXXX 908
            DVKLCALLINA+RVAGQ+  A   FENMRR+GL P+DK +AL+LAAY             
Sbjct: 243  DVKLCALLINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALMLAAYEKENKLNKALDFL 302

Query: 909  XXXXXXNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAAKE 1034
                    VLGKE SE+L  WF+RLGVV EV LVL+EY+AKE
Sbjct: 303  IDLERDGIVLGKEASELLAAWFQRLGVVKEVELVLREYSAKE 344


>ref|XP_002320730.1| predicted protein [Populus trichocarpa] gi|222861503|gb|EEE99045.1|
            predicted protein [Populus trichocarpa]
          Length = 407

 Score =  398 bits (1023), Expect = e-108
 Identities = 205/338 (60%), Positives = 256/338 (75%)
 Frame = +3

Query: 15   KYKWIKIGPNISEAQEKAISQLPPKMSKRDKAFMKQIICFDYSEKNGVTLSSILRSWVKI 194
            K++W++IGPNI E Q++AISQLP KM+KR KA M+QIICF+  +K G +L  +L +WVKI
Sbjct: 72   KFRWVEIGPNIPEEQKQAISQLPFKMTKRCKALMRQIICFN--DKKG-SLRGLLSAWVKI 128

Query: 195  MKPRRADWLLVLKEMSKLEVPLVSEVTEYALLEDSFEANIRDYTKLIDGYAKQNRLHDAE 374
            MKPRR DWL +LKE++K+E PL  EV E ALLE+SFEAN+RDYTK+I  Y   N+L +AE
Sbjct: 129  MKPRRKDWLSILKELNKMEHPLYLEVVEIALLEESFEANVRDYTKIIHFYGMNNQLEEAE 188

Query: 375  ITLQAMKKRGFTCDQITLTVLINMYSKAGSLEQAEEIFEELKLLGLPLDKRAYGAMIMAY 554
             T  AM++RGF  DQ+TLT +I+MYSK G+L  AEE FEELKLLG PLD+R+YG+MIMAY
Sbjct: 189  RTRLAMEERGFVSDQVTLTAMIHMYSKGGNLTLAEETFEELKLLGQPLDRRSYGSMIMAY 248

Query: 555  VRAGMPDRGEILLGEMEAQEIYAGKEVYKALLRAYSTLGNTLGAQRVFDAIQFARISPDV 734
            +RAGMP++GE++L EM+AQEI AG EVYKALLRAYS +G+  GAQRVFDAIQ A I PD 
Sbjct: 249  IRAGMPEKGEMILREMDAQEIRAGSEVYKALLRAYSIIGDADGAQRVFDAIQLAGIPPDD 308

Query: 735  KLCALLINAHRVAGQSDGARRVFENMRRAGLTPSDKCVALILAAYXXXXXXXXXXXXXXX 914
            + CA+L+NA+ +AGQS  A   FENM RAG+ P+D+CVAL+LAAY               
Sbjct: 309  RTCAVLLNAYGMAGQSQNAYATFENMWRAGIEPTDRCVALVLAAYEKENKLNQALDFLIG 368

Query: 915  XXXXNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAA 1028
                  ++GKE SEVL  WF RLGVV EV LVL+EYAA
Sbjct: 369  LEREKLIIGKEASEVLAEWFGRLGVVKEVELVLREYAA 406


>ref|XP_004134345.1| PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like
            [Cucumis sativus] gi|449480346|ref|XP_004155867.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At1g01970-like [Cucumis sativus]
          Length = 404

 Score =  390 bits (1001), Expect = e-106
 Identities = 201/341 (58%), Positives = 254/341 (74%)
 Frame = +3

Query: 15   KYKWIKIGPNISEAQEKAISQLPPKMSKRDKAFMKQIICFDYSEKNGVTLSSILRSWVKI 194
            +++W+++G +I+E Q++AISQLPPKM+KR KA MKQIICF  S + G  LS +L +WV+I
Sbjct: 65   RFRWVEVGYDITETQKQAISQLPPKMTKRCKAVMKQIICF--SPQKG-ELSDMLAAWVRI 121

Query: 195  MKPRRADWLLVLKEMSKLEVPLVSEVTEYALLEDSFEANIRDYTKLIDGYAKQNRLHDAE 374
            MKP RADWLLVLK +  L  PL  +V E AL E +FEAN RDYTK+I  Y KQN+L DAE
Sbjct: 122  MKPERADWLLVLKHLRILNHPLYIQVAEAALEEITFEANTRDYTKIIHHYGKQNQLEDAE 181

Query: 375  ITLQAMKKRGFTCDQITLTVLINMYSKAGSLEQAEEIFEELKLLGLPLDKRAYGAMIMAY 554
              L +M++RGF CDQITLT +I++YSKA  L  A++ FEELKLL  PLDKR++GAMIMAY
Sbjct: 182  KVLLSMRERGFVCDQITLTTMIHIYSKADKLNLAKQTFEELKLLEQPLDKRSFGAMIMAY 241

Query: 555  VRAGMPDRGEILLGEMEAQEIYAGKEVYKALLRAYSTLGNTLGAQRVFDAIQFARISPDV 734
            VRAG P+ GE +L EM+A++IYAG EVYKALLRAYS +GN  GAQRVFDAIQ A I+PD 
Sbjct: 242  VRAGFPEEGEKILKEMDAKDIYAGSEVYKALLRAYSMVGNAEGAQRVFDAIQLAAITPDE 301

Query: 735  KLCALLINAHRVAGQSDGARRVFENMRRAGLTPSDKCVALILAAYXXXXXXXXXXXXXXX 914
            KLC LLINA+ +AGQS  A+  F+NMRRAG+ PSDKC+AL L+AY               
Sbjct: 302  KLCGLLINAYLMAGQSREAQIAFDNMRRAGIEPSDKCIALALSAYEKENRLNSALELLID 361

Query: 915  XXXXNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAAKEI 1037
                N ++GKE S++L  W +RLGVV+EV +VL+EY  KE+
Sbjct: 362  LEKDNVMVGKEASKILAAWLKRLGVVEEVEIVLREYTEKEV 402


>ref|XP_003533639.1| PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like
            [Glycine max]
          Length = 356

 Score =  381 bits (978), Expect = e-103
 Identities = 193/343 (56%), Positives = 253/343 (73%)
 Frame = +3

Query: 9    QKKYKWIKIGPNISEAQEKAISQLPPKMSKRDKAFMKQIICFDYSEKNGVTLSSILRSWV 188
            +++Y+WI++G N+++ Q++AIS+LP +M+ R KA M+QIICF  +EK   T+S +LRSWV
Sbjct: 14   ERRYRWIEVGKNVTKEQQQAISKLPFRMADRSKALMRQIICFS-AEKG--TISDLLRSWV 70

Query: 189  KIMKPRRADWLLVLKEMSKLEVPLVSEVTEYALLEDSFEANIRDYTKLIDGYAKQNRLHD 368
            K+MKP RADWL VLKE+   E P   EV ++ LLE+SFE NIRDYTK+I  Y + N L D
Sbjct: 71   KLMKPTRADWLSVLKELRTTEHPFYLEVAKHTLLEESFEVNIRDYTKIIHYYGEHNLLED 130

Query: 369  AEITLQAMKKRGFTCDQITLTVLINMYSKAGSLEQAEEIFEELKLLGLPLDKRAYGAMIM 548
            AE  L  MK+RGF  DQ+ LT +++M SKAG+ ++A+E FEE+KLLG PLDKR+YG+MIM
Sbjct: 131  AEKFLTLMKQRGFIYDQVILTTMVHMSSKAGNHDRAKEYFEEIKLLGEPLDKRSYGSMIM 190

Query: 549  AYVRAGMPDRGEILLGEMEAQEIYAGKEVYKALLRAYSTLGNTLGAQRVFDAIQFARISP 728
            AY+RAGMP+ GE LL +MEAQEI AG E+YKALLRAYS +GN  GAQRVFDAIQ A I+P
Sbjct: 191  AYIRAGMPEEGENLLQQMEAQEILAGSEIYKALLRAYSMIGNAEGAQRVFDAIQLAGITP 250

Query: 729  DVKLCALLINAHRVAGQSDGARRVFENMRRAGLTPSDKCVALILAAYXXXXXXXXXXXXX 908
            D K+C+LL+NA+ +AGQS  A   FENMRRAG+ PSDKC+A +L AY             
Sbjct: 251  DDKICSLLVNAYAMAGQSQKALIAFENMRRAGIKPSDKCIASVLVAYEKESKINTALEFL 310

Query: 909  XXXXXXNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAAKEI 1037
                    ++G+E S VL  WFR+LGVV+EV LVL+++A  E+
Sbjct: 311  IDLERDGIMVGEEASAVLAKWFRKLGVVEEVELVLRDFAIIEV 353