BLASTX nr result
ID: Coptis24_contig00021149
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00021149
(868 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003520480.1| PREDICTED: cell division cycle protein 48 ho... 147 1e-48
ref|XP_002277745.2| PREDICTED: cell division cycle protein 48 ho... 147 1e-48
emb|CBI32813.3| unnamed protein product [Vitis vinifera] 147 1e-48
ref|XP_003624920.1| AAA family ATPase CDC48 subfamily [Medicago ... 145 9e-47
ref|XP_002308870.1| predicted protein [Populus trichocarpa] gi|2... 140 1e-46
>ref|XP_003520480.1| PREDICTED: cell division cycle protein 48 homolog AF_1297-like
[Glycine max]
Length = 1036
Score = 147 bits (370), Expect(2) = 1e-48
Identities = 74/127 (58%), Positives = 94/127 (74%)
Frame = +2
Query: 197 KKVDVTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCNSDVSM 376
++V+VTVIA TN PDKIDPALLRPGRFD+LLYVGP +E D E+IF I + ++PC SDVS+
Sbjct: 878 QRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLRKIPCGSDVSL 937
Query: 377 KELARLTEGYTGANISLICRXXXXXXXXXXXXXXXXSMAHFQIGLR*MQPSDVRSYQELS 556
KELARLT+G TGA+ISLICR +M H ++ ++ +QPS+V SYQ+LS
Sbjct: 938 KELARLTDGCTGADISLICREAAVAAIEESLDASVITMEHLKMAIKQIQPSEVHSYQKLS 997
Query: 557 PKFQRLV 577
KFQR V
Sbjct: 998 TKFQRAV 1004
Score = 73.2 bits (178), Expect(2) = 1e-48
Identities = 40/63 (63%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Frame = +3
Query: 12 LLAHTVGESEKAVKSVFSKARVNTPSIILFDEIDALP---SFVDNGASVSDRVTSQLLVE 182
L + VGESEKAV+S+F+KAR N PSI+ FDEID+L +G SVSDRV SQLLVE
Sbjct: 813 LFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVE 872
Query: 183 LDG 191
LDG
Sbjct: 873 LDG 875
Score = 55.5 bits (132), Expect(2) = 2e-11
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +2
Query: 215 VIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCN-SDVSMKELAR 391
VIA TN PD I+PAL RPGRFD+ + +G S DI + M + +++ ++ LA
Sbjct: 553 VIAATNRPDHIEPALRRPGRFDKEIEIGVPSPNQRSDILLTLLSEMDHSLAELQIENLAT 612
Query: 392 LTEGYTGANISLIC 433
+T G+ GA+++ +C
Sbjct: 613 VTHGFVGADLAALC 626
Score = 39.7 bits (91), Expect(2) = 2e-11
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +3
Query: 30 GESEKAVKSVFSKARVNTPSIILFDEIDAL-PSFVDNGASVSDRVTSQLLVELDG 191
GESE+ + +F A P+++ DE+DA+ P+ D G +S R+ + LL +DG
Sbjct: 490 GESEQQLHELFDSAIQAAPAVVFIDELDAIAPARKDGGEELSQRLVATLLNLVDG 544
>ref|XP_002277745.2| PREDICTED: cell division cycle protein 48 homolog AF_1297-like [Vitis
vinifera]
Length = 1030
Score = 147 bits (372), Expect(2) = 1e-48
Identities = 78/135 (57%), Positives = 97/135 (71%)
Frame = +2
Query: 197 KKVDVTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCNSDVSM 376
++VDVTVIA TN PDKIDPALLRPGRFD+LLYVGP +E+D DIF I + ++P +SDVS+
Sbjct: 876 QRVDVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESDRADIFHIHLCKIPFSSDVSI 935
Query: 377 KELARLTEGYTGANISLICRXXXXXXXXXXXXXXXXSMAHFQIGLR*MQPSDVRSYQELS 556
ELA LTEGYTGA+ISLICR +M H + +R +QPS+++SYQELS
Sbjct: 936 GELAFLTEGYTGADISLICREAAIAAIEDNLDASEITMEHLKTAIRQVQPSELQSYQELS 995
Query: 557 PKFQRLVLSGTAVDD 601
KFQRLV S D+
Sbjct: 996 TKFQRLVHSSDKRDE 1010
Score = 72.4 bits (176), Expect(2) = 1e-48
Identities = 40/63 (63%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Frame = +3
Query: 12 LLAHTVGESEKAVKSVFSKARVNTPSIILFDEIDALPSF---VDNGASVSDRVTSQLLVE 182
L + VGESEKAV+S+F+KAR N PSII FDEID L +G SV+DRV SQLLVE
Sbjct: 811 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVADRVMSQLLVE 870
Query: 183 LDG 191
LDG
Sbjct: 871 LDG 873
Score = 57.0 bits (136), Expect(2) = 3e-13
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +2
Query: 209 VTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCN-SDVSMKEL 385
+ VIA TN PD I+PAL RPGR D+ + +G S DI + M + SD+ +++L
Sbjct: 558 ILVIAATNRPDSIEPALRRPGRLDREMEIGVPSPGQRYDILLNLLSEMENSLSDMQIQQL 617
Query: 386 ARLTEGYTGANISLIC 433
A +T G+ GA+++ +C
Sbjct: 618 ATVTHGFVGADLAALC 633
Score = 44.3 bits (103), Expect(2) = 3e-13
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 12 LLAHTVGESEKAVKSVFSKARVNTPSIILFDEIDAL-PSFVDNGASVSDRVTSQLLVELD 188
+++ GESE+A+ +F A P+++ DE+DA+ P+ D G +S R+ + LL +D
Sbjct: 491 IVSQYYGESEQALHEIFDSASQAAPAVVFIDELDAIAPARKDGGEELSHRIVATLLNLMD 550
Query: 189 G 191
G
Sbjct: 551 G 551
>emb|CBI32813.3| unnamed protein product [Vitis vinifera]
Length = 956
Score = 147 bits (372), Expect(2) = 1e-48
Identities = 78/135 (57%), Positives = 97/135 (71%)
Frame = +2
Query: 197 KKVDVTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCNSDVSM 376
++VDVTVIA TN PDKIDPALLRPGRFD+LLYVGP +E+D DIF I + ++P +SDVS+
Sbjct: 802 QRVDVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESDRADIFHIHLCKIPFSSDVSI 861
Query: 377 KELARLTEGYTGANISLICRXXXXXXXXXXXXXXXXSMAHFQIGLR*MQPSDVRSYQELS 556
ELA LTEGYTGA+ISLICR +M H + +R +QPS+++SYQELS
Sbjct: 862 GELAFLTEGYTGADISLICREAAIAAIEDNLDASEITMEHLKTAIRQVQPSELQSYQELS 921
Query: 557 PKFQRLVLSGTAVDD 601
KFQRLV S D+
Sbjct: 922 TKFQRLVHSSDKRDE 936
Score = 72.4 bits (176), Expect(2) = 1e-48
Identities = 40/63 (63%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Frame = +3
Query: 12 LLAHTVGESEKAVKSVFSKARVNTPSIILFDEIDALPSF---VDNGASVSDRVTSQLLVE 182
L + VGESEKAV+S+F+KAR N PSII FDEID L +G SV+DRV SQLLVE
Sbjct: 737 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVADRVMSQLLVE 796
Query: 183 LDG 191
LDG
Sbjct: 797 LDG 799
Score = 57.0 bits (136), Expect(2) = 3e-13
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +2
Query: 209 VTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCN-SDVSMKEL 385
+ VIA TN PD I+PAL RPGR D+ + +G S DI + M + SD+ +++L
Sbjct: 537 ILVIAATNRPDSIEPALRRPGRLDREMEIGVPSPGQRYDILLNLLSEMENSLSDMQIQQL 596
Query: 386 ARLTEGYTGANISLIC 433
A +T G+ GA+++ +C
Sbjct: 597 ATVTHGFVGADLAALC 612
Score = 44.3 bits (103), Expect(2) = 3e-13
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 12 LLAHTVGESEKAVKSVFSKARVNTPSIILFDEIDAL-PSFVDNGASVSDRVTSQLLVELD 188
+++ GESE+A+ +F A P+++ DE+DA+ P+ D G +S R+ + LL +D
Sbjct: 470 IVSQYYGESEQALHEIFDSASQAAPAVVFIDELDAIAPARKDGGEELSHRIVATLLNLMD 529
Query: 189 G 191
G
Sbjct: 530 G 530
>ref|XP_003624920.1| AAA family ATPase CDC48 subfamily [Medicago truncatula]
gi|355499935|gb|AES81138.1| AAA family ATPase CDC48
subfamily [Medicago truncatula]
Length = 1046
Score = 145 bits (365), Expect(2) = 9e-47
Identities = 76/138 (55%), Positives = 98/138 (71%)
Frame = +2
Query: 197 KKVDVTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCNSDVSM 376
K+VDV VIA TN PDKIDPALLR GRFD+LLYVGP +E D E+IF I + + P +SDVSM
Sbjct: 853 KRVDVIVIAATNRPDKIDPALLRQGRFDRLLYVGPPNEIDREEIFSIHLRKTPYDSDVSM 912
Query: 377 KELARLTEGYTGANISLICRXXXXXXXXXXXXXXXXSMAHFQIGLR*MQPSDVRSYQELS 556
KELA+LT+GYTGA+I+ ICR +M HF++ ++ +QPS+ +SYQ+LS
Sbjct: 913 KELAQLTDGYTGADIAHICRQAALAALEESFDASVVTMKHFKMAIKQVQPSEFQSYQKLS 972
Query: 557 PKFQRLVLSGTAVDDRSC 610
KFQR V S D+R+C
Sbjct: 973 AKFQRAVFS----DERAC 986
Score = 68.9 bits (167), Expect(2) = 9e-47
Identities = 38/63 (60%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Frame = +3
Query: 12 LLAHTVGESEKAVKSVFSKARVNTPSIILFDEIDALP---SFVDNGASVSDRVTSQLLVE 182
L + VGESEKAV+S+F KAR N P+II FDEID+L +G SVSDRV +QLLV+
Sbjct: 788 LFSKWVGESEKAVRSLFDKARANAPAIIFFDEIDSLAITRGKDGDGVSVSDRVMAQLLVQ 847
Query: 183 LDG 191
LDG
Sbjct: 848 LDG 850
Score = 53.5 bits (127), Expect(2) = 1e-11
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = +2
Query: 209 VTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCN-SDVSMKEL 385
+ VIA TN D+IDPAL RPGRFD+ + +G S+ + DI + + + S+ ++EL
Sbjct: 524 LVVIAATNRLDRIDPALRRPGRFDKEVEIGVPSQVERGDILRAILGEIDHSLSETQIEEL 583
Query: 386 ARLTEGYTGANI 421
A +T G+ GA++
Sbjct: 584 ASITHGFVGADL 595
Score = 42.7 bits (99), Expect(2) = 1e-11
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 12 LLAHTVGESEKAVKSVFSKARVNTPSIILFDEIDAL-PSFVDNGASVSDRVTSQLLVELD 188
++ GESEKA++ VF A P+++ D+IDA+ P D G +S R+ LL +D
Sbjct: 457 IVTENYGESEKALQEVFDSAIQAAPAVLFIDKIDAIAPPRKDGGEELSKRLVVTLLGLMD 516
Query: 189 G 191
G
Sbjct: 517 G 517
>ref|XP_002308870.1| predicted protein [Populus trichocarpa] gi|222854846|gb|EEE92393.1|
predicted protein [Populus trichocarpa]
Length = 1042
Score = 140 bits (353), Expect(2) = 1e-46
Identities = 71/129 (55%), Positives = 94/129 (72%)
Frame = +2
Query: 197 KKVDVTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCNSDVSM 376
++V+VTVIA TN PDKIDPALLRPGRFD+LLYVGP ++ D EDIF I + ++PC+SDV++
Sbjct: 893 QRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNQNDREDIFRIHLHKVPCSSDVNI 952
Query: 377 KELARLTEGYTGANISLICRXXXXXXXXXXXXXXXXSMAHFQIGLR*MQPSDVRSYQELS 556
KELA LT+G TGA+I+LICR M H + ++ +QP+++ SYQ+LS
Sbjct: 953 KELACLTDGCTGADIALICREAAVAAIEENIDASEVPMQHLKTAIQQVQPTEINSYQDLS 1012
Query: 557 PKFQRLVLS 583
KFQRLV S
Sbjct: 1013 AKFQRLVHS 1021
Score = 73.2 bits (178), Expect(2) = 1e-46
Identities = 40/63 (63%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Frame = +3
Query: 12 LLAHTVGESEKAVKSVFSKARVNTPSIILFDEIDALPSF---VDNGASVSDRVTSQLLVE 182
L + VGESEKAV+S+F+KAR N PSII FDEID L +G SVSDRV SQLL+E
Sbjct: 828 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLIE 887
Query: 183 LDG 191
LDG
Sbjct: 888 LDG 890
Score = 58.9 bits (141), Expect(2) = 9e-14
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +2
Query: 194 AKKVDVTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCN-SDV 370
A+ + VIA TN PD I+PAL RPGR D+ + +G S + DI + M + SD+
Sbjct: 538 ARTDGLLVIAATNRPDSIEPALRRPGRLDREIEIGVPSPSQRLDILHTLLSEMEHSVSDM 597
Query: 371 SMKELARLTEGYTGANISLIC 433
+K+LA T G+ GA+++ +C
Sbjct: 598 QLKQLAMATHGFVGADLAALC 618
Score = 44.3 bits (103), Expect(2) = 9e-14
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +3
Query: 30 GESEKAVKSVFSKARVNTPSIILFDEIDAL-PSFVDNGASVSDRVTSQLLVELDG 191
GESE+A+ VF A + P+++ DE+DA+ P+ D G +S R+ + LL +DG
Sbjct: 482 GESEQAMHKVFDSACQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 536