BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021136
         (626 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ...    74   6e-13
emb|CAN75081.1| hypothetical protein VITISV_027743 [Vitis vinifera]    72   4e-12
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...    69   5e-11
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    61   7e-11
ref|XP_002530566.1| nuclease, putative [Ricinus communis] gi|223...    66   3e-10

>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
          Length = 799

 Score = 73.6 bits (179), Expect(2) = 6e-13
 Identities = 37/99 (37%), Positives = 59/99 (59%)
 Frame = +2

Query: 26  GTVKHKSIIALSWVFPPRGWYKLNTDGSALGSPGYGGAGCLFRGDDGRFVGAAAIPSPCA 205
           G ++ +    +SWV P  GW KLNTDG++ G+PG   AG + R  DG ++G  A+     
Sbjct: 614 GKIRGRIERMVSWVKPAEGWLKLNTDGASKGNPGLATAGGILRQQDGSWIGGFAVNIGIC 673

Query: 206 SSLMAEALAIRMGLKLADTKHLTPLILETDSKVVMHFIT 322
           S+ +AE   +  GL +A  + +T L +E DS++V+ F+T
Sbjct: 674 SAPLAELWRVYYGLYIAWERKITRLEVEVDSELVVGFLT 712



 Score = 25.8 bits (55), Expect(2) = 6e-13
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 327 WIIHHHGKLLMLLMIFDICCGKYPRYMWYCYRETNTGADYLANFGSKL 470
           WI   H    ++ + +      +   + + YRE N  AD LAN+ S L
Sbjct: 714 WISDSHPLSFLVRLCYGFISRDWIVRISHVYREANRLADGLANYASSL 761


>emb|CAN75081.1| hypothetical protein VITISV_027743 [Vitis vinifera]
          Length = 395

 Score = 72.0 bits (175), Expect(2) = 4e-12
 Identities = 42/115 (36%), Positives = 60/115 (52%)
 Frame = +2

Query: 59  SWVFPPRGWYKLNTDGSALGSPGYGGAGCLFRGDDGRFVGAAAIPSPCASSLMAEALAIR 238
           SW  P  GW KLN DGS  G  G  G G L R   G F+ A A P   ++SLMAE  A+ 
Sbjct: 226 SWHRPGAGWVKLNFDGSFKGRTGRAGGGGLLRDAQGSFIAAFATPLDTSNSLMAEIGALE 285

Query: 239 MGLKLADTKHLTPLILETDSKVVMHFITHLDHPPPWEVVDVIDDIRHMLRQIPEV 403
            GL+LA   ++  +++E DSK+ +  ++        E   ++  IR +L+   EV
Sbjct: 286 GGLRLALKLNVERILIEGDSKITIEMLSGKREXTXEEEKSLMTHIRELLQGFQEV 340



 Score = 24.6 bits (52), Expect(2) = 4e-12
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 417 YRETNTGADYLANFGSKLASQINW 488
           +RE N  AD+LAN  ++    + W
Sbjct: 346 FREANRPADHLANIATQAHEPMEW 369


>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 321

 Score = 69.3 bits (168), Expect(2) = 5e-11
 Identities = 35/89 (39%), Positives = 54/89 (60%)
 Frame = +2

Query: 56  LSWVFPPRGWYKLNTDGSALGSPGYGGAGCLFRGDDGRFVGAAAIPSPCASSLMAEALAI 235
           +SWV P  GW KLNTDG++ G+PG+  AG + R  +G ++G  A+     S+ +AE   +
Sbjct: 151 VSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGV 210

Query: 236 RMGLKLADTKHLTPLILETDSKVVMHFIT 322
             GL +A  +    + LE DSK+V+ F+T
Sbjct: 211 YYGLFIAWGRGARRVELEVDSKMVVGFLT 239



 Score = 23.5 bits (49), Expect(2) = 5e-11
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 330 IIHHHGKLLMLLMIFDICCGKYPRYMWYCYRETNTGADYLANFGSKLA 473
           I   H    +L + +D     +   + + YRE N  AD LAN+   L+
Sbjct: 242 IADSHPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLS 289


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 60.8 bits (146), Expect(2) = 7e-11
 Identities = 35/98 (35%), Positives = 50/98 (51%)
 Frame = +2

Query: 50   IALSWVFPPRGWYKLNTDGSALGSPGYGGAGCLFRGDDGRFVGAAAIPSPCASSLMAEAL 229
            I + W  P  GW KLNTDG++ G+PG  G G L RG  G      AI     +   AE L
Sbjct: 1205 ILVRWQCPKEGWVKLNTDGASKGNPGPAGGGGLIRGPRGEIHEVFAINCGSCTCTKAELL 1264

Query: 230  AIRMGLKLADTKHLTPLILETDSKVVMHFITHLDHPPP 343
            A+  GL +A   +   +I+  DS++V   +  + + PP
Sbjct: 1265 AVLRGLMIAWEGNHKQVIVSVDSELVAKLL--ISNAPP 1300



 Score = 31.6 bits (70), Expect(2) = 7e-11
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +3

Query: 369  IFDICCGKYPRYMW-----YCYRETNTGADYLANFGSKLASQINWSYVHRHIIPEEYH 527
            I + C     R  W     +CYRETN  AD LAN G     ++    V    IP++ H
Sbjct: 1307 IINRCLSLIARKEWKIVIEHCYRETNRAADRLANMGVCAVERV----VMIEAIPKDLH 1360


>ref|XP_002530566.1| nuclease, putative [Ricinus communis] gi|223529865|gb|EEF31796.1|
           nuclease, putative [Ricinus communis]
          Length = 177

 Score = 65.9 bits (159), Expect(2) = 3e-10
 Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
 Frame = +2

Query: 71  PPRGWYKLNTDGSALGSPGYGGAGCLFRGDDGRFVGAAAIP-SPCASSLMAEALAIRMGL 247
           PP GW+K+NTDG+   S G   A  LFR  DG++ GA AI  + C S+ +AE  +I  GL
Sbjct: 7   PPEGWFKINTDGTWKKSFGIATAAGLFRNSDGQWCGAFAIKLTDCYSAFVAELCSILNGL 66

Query: 248 KLADTKHLTPLILETDSKV 304
           K+A       +ILETD+K+
Sbjct: 67  KIAWDAGFKNIILETDNKI 85



 Score = 24.6 bits (52), Expect(2) = 3e-10
 Identities = 18/67 (26%), Positives = 24/67 (35%)
 Frame = +3

Query: 417 YRETNTGADYLANFGSKLASQINWSYVHRHIIPEEYHFLPPQTIV*FSDPPNFICNSLVK 596
           YRE N  A+ LANF                         PP  +V    PP    N L++
Sbjct: 126 YREGNQVAEALANFAVDF---------------------PPGKMVMLDYPPESTINLLIE 164

Query: 597 DLQGLTY 617
           D+ G  +
Sbjct: 165 DMHGAKF 171