BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021116
         (1146 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001030887.1| F-box protein [Arabidopsis thaliana] gi|3326...    49   2e-09
ref|XP_002445197.1| hypothetical protein SORBIDRAFT_07g005760 [S...    57   4e-08
ref|XP_002331319.1| f-box family protein [Populus trichocarpa] g...    61   1e-07
ref|XP_003628780.1| F-box family protein [Medicago truncatula] g...    50   1e-07
dbj|BAK04219.1| predicted protein [Hordeum vulgare subsp. vulgare]     54   1e-07

>ref|NP_001030887.1| F-box protein [Arabidopsis thaliana] gi|332646338|gb|AEE79859.1|
           F-box protein [Arabidopsis thaliana]
          Length = 345

 Score = 48.9 bits (115), Expect(2) = 2e-09
 Identities = 56/240 (23%), Positives = 111/240 (46%), Gaps = 5/240 (2%)
 Frame = -2

Query: 905 EEFIDFVHKVLLTRHQFSSIHTLRLGIAVQQNVQQLDLFIEFDYRNEYLLEDLLSIDKAD 726
           + F+DFV +VL  + + S I    L   +  +  ++D +I     +  L   +  +D   
Sbjct: 66  QSFMDFVDRVLALQAE-SPIKKFSLKCRIGVDSDRVDGWI-----SNVLNRGVSELDLLI 119

Query: 725 IHMEVRKSLFDELEEDMVIPLRRKRTFGVNMVNFLDGLSSAKSLTLSAWVIEVLPRAAEV 546
           I   VR  + D LE+ M   + R   FG ++   ++G+ + + L LSA  +EVL    E 
Sbjct: 120 ILERVRLPINDGLEDAMDNVVLR---FG-HVGKLMNGIRNVEYLELSADTLEVLSLCCES 175

Query: 545 IPTSFSTRHVKVKTWLSKYSIQGLKYILENSENLESLIVE-----ITKPKVKTAGIWESQ 381
           +P   + + + +K+   +   Q +  +L N  +LE L++E     +T            +
Sbjct: 176 MPVFKNLKSLAIKSTEGR-GWQAMPVLLRNCPHLEFLLIEGLLHHVTDKCGDACDCVPRE 234

Query: 380 EAAEVVSACRFNKLRFVEIRNFQGYVNELELLKSMLKNAGALEKLTVLTSKNNLPDN*DA 201
           +    +++C  N L   EI  F+G   E++++K  L    +L+++ +   ++  P N +A
Sbjct: 235 DKGRSLTSCPVNML---EIHGFRGTKKEMQMIKHFLDYFPSLKEMDIYADEDG-PTNLEA 290



 Score = 40.0 bits (92), Expect(2) = 2e-09
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = -3

Query: 1072 DRLSTLPEALIHHILSFLEMRYVVQTCILSKRWTKL 965
            DR+ +LP+ L+ HILSFL  +    T +LSKRW  L
Sbjct: 2    DRVGSLPDELLSHILSFLTTKEAALTSLLSKRWRYL 37


>ref|XP_002445197.1| hypothetical protein SORBIDRAFT_07g005760 [Sorghum bicolor]
            gi|241941547|gb|EES14692.1| hypothetical protein
            SORBIDRAFT_07g005760 [Sorghum bicolor]
          Length = 553

 Score = 56.6 bits (135), Expect(2) = 4e-08
 Identities = 21/38 (55%), Positives = 31/38 (81%)
 Frame = -3

Query: 1072 DRLSTLPEALIHHILSFLEMRYVVQTCILSKRWTKLWS 959
            DRLS LP+ L+HH++SF++ R V +TC+LS+RW  LW+
Sbjct: 44   DRLSALPDGLLHHVMSFMKARDVARTCVLSRRWRDLWA 81



 Score = 28.1 bits (61), Expect(2) = 4e-08
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 905 EEFIDFVHKVLLTRHQFSSIHTLRLGIAVQQNVQQLD 795
           ++F  FV+++LL R   + I TLRL    Q++    D
Sbjct: 98  QDFAKFVYRLLLAREALAPIDTLRLRSPRQEDYDDFD 134


>ref|XP_002331319.1| f-box family protein [Populus trichocarpa]
            gi|222873902|gb|EEF11033.1| f-box family protein [Populus
            trichocarpa]
          Length = 453

 Score = 60.8 bits (146), Expect(2) = 1e-07
 Identities = 25/38 (65%), Positives = 31/38 (81%)
 Frame = -3

Query: 1075 EDRLSTLPEALIHHILSFLEMRYVVQTCILSKRWTKLW 962
            EDR+STLP  L+HHILSF++   VVQTC+LSKRW  +W
Sbjct: 34   EDRISTLPNVLLHHILSFVDAVQVVQTCVLSKRWMNVW 71



 Score = 22.3 bits (46), Expect(2) = 1e-07
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 899 FIDFVHKVLLTRHQFSSI 846
           F DF++ VL+ RH   ++
Sbjct: 100 FTDFIYHVLVRRHNLKAV 117


>ref|XP_003628780.1| F-box family protein [Medicago truncatula]
            gi|355522802|gb|AET03256.1| F-box family protein
            [Medicago truncatula]
          Length = 451

 Score = 50.1 bits (118), Expect(2) = 1e-07
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = -3

Query: 1075 EDRLSTLPEALIHHILSFLEMRYVVQTCILSKRWTKLW 962
            +DR+S LP+ ++ HILS LE ++ VQT ILS RW  LW
Sbjct: 79   KDRISDLPDCILFHILSSLETKHAVQTTILSTRWNNLW 116



 Score = 32.7 bits (73), Expect(2) = 1e-07
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 15/62 (24%)
 Frame = -2

Query: 917 FKTEEEFIDFVHKVLLTRHQFSSIHTL---RLG------------IAVQQNVQQLDLFIE 783
           FKT + F  FV +VL  R   +++HTL   R G             A   NVQ+LD+F+ 
Sbjct: 129 FKTLKSFTKFVSRVLSLRDDSTALHTLYFQRKGCVEPPILSKLVEYAASHNVQRLDIFVR 188

Query: 782 FD 777
            D
Sbjct: 189 CD 190


>dbj|BAK04219.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 366

 Score = 53.9 bits (128), Expect(2) = 1e-07
 Identities = 22/38 (57%), Positives = 31/38 (81%)
 Frame = -3

Query: 1072 DRLSTLPEALIHHILSFLEMRYVVQTCILSKRWTKLWS 959
            DRLS LP+AL+HHI+S L+   VV+TC+L++RW  LW+
Sbjct: 36   DRLSALPDALLHHIMSSLKAWEVVRTCVLARRWRHLWA 73



 Score = 28.9 bits (63), Expect(2) = 1e-07
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 905 EEFIDFVHKVLLTRHQFSSIHTLRL 831
           EEF DFVH++ L R   + + TLRL
Sbjct: 94  EEFRDFVHRLFLLRDASAPVGTLRL 118