BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021105
         (309 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containi...   152   4e-35
ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containi...   140   1e-31
ref|XP_004144516.1| PREDICTED: pentatricopeptide repeat-containi...   135   3e-30
ref|XP_003626823.1| Pentatricopeptide repeat-containing protein ...   135   4e-30
ref|XP_003596871.1| Pentatricopeptide repeat-containing protein ...   134   1e-29

>ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 313

 Score =  152 bits (383), Expect = 4e-35
 Identities = 72/101 (71%), Positives = 82/101 (81%)
 Frame = -3

Query: 304 NGFSYDVATCNALISMYCKCGDLVTARKVFDGMAERNLITWSAMIAGYGMHGFSSEVFKL 125
           NG + D+AT NALISMY KCGDL  ARKVFD M ERNL+TWSAM+AGYG+HG   EVF+L
Sbjct: 137 NGLASDLATINALISMYSKCGDLAAARKVFDRMTERNLVTWSAMMAGYGVHGVFGEVFEL 196

Query: 124 FEEMLDAGESPDGVTFTAILAACSHGGLTDMGRGLFKMMEE 2
           F+ M+DAGE PDGVTFTA+LAACSHGG  + GR  F MMEE
Sbjct: 197 FDGMVDAGEVPDGVTFTAVLAACSHGGFMENGRKYFGMMEE 237


>ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 315

 Score =  140 bits (352), Expect = 1e-31
 Identities = 67/101 (66%), Positives = 80/101 (79%)
 Frame = -3

Query: 307 VNGFSYDVATCNALISMYCKCGDLVTARKVFDGMAERNLITWSAMIAGYGMHGFSSEVFK 128
           VNGF  D+A  NALI+MY KCG LV ARK+FD M +RN IT+S M+AGYGMHG   EVF+
Sbjct: 137 VNGFGLDLANSNALINMYSKCGHLVYARKLFDRMWQRNEITFSTMMAGYGMHGKCGEVFE 196

Query: 127 LFEEMLDAGESPDGVTFTAILAACSHGGLTDMGRGLFKMME 5
           LF++M++AGE PDGVTFTA+L+ACSHGG  D GR   KMME
Sbjct: 197 LFDKMVEAGERPDGVTFTAVLSACSHGGFIDKGREYLKMME 237


>ref|XP_004144516.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449515851|ref|XP_004164961.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 308

 Score =  135 bits (341), Expect = 3e-30
 Identities = 61/100 (61%), Positives = 79/100 (79%)
 Frame = -3

Query: 307 VNGFSYDVATCNALISMYCKCGDLVTARKVFDGMAERNLITWSAMIAGYGMHGFSSEVFK 128
           +NGFS D+ + NALI+MY KCGDL  ARKVFDGM ERN ++WSA++AGYG+HG   EVF+
Sbjct: 137 INGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGEVFR 196

Query: 127 LFEEMLDAGESPDGVTFTAILAACSHGGLTDMGRGLFKMM 8
           LFE M++ G+ PD +TFT++L ACSHGGL + G+  F MM
Sbjct: 197 LFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMM 236


>ref|XP_003626823.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355520845|gb|AET01299.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 355

 Score =  135 bits (339), Expect = 4e-30
 Identities = 61/101 (60%), Positives = 76/101 (75%)
 Frame = -3

Query: 307 VNGFSYDVATCNALISMYCKCGDLVTARKVFDGMAERNLITWSAMIAGYGMHGFSSEVFK 128
           VNGF+ D+   NALI+MY KCG+L  ARKVFDGM ERN +TWS MIAGYGMHG   EVF+
Sbjct: 137 VNGFALDLKNSNALINMYAKCGELEFARKVFDGMCERNEVTWSTMIAGYGMHGRFEEVFE 196

Query: 127 LFEEMLDAGESPDGVTFTAILAACSHGGLTDMGRGLFKMME 5
           +F  M++ GE  D V+FT +L ACSHGG  + GR +F+MM+
Sbjct: 197 MFNRMVEVGERMDNVSFTVVLTACSHGGFVEKGREIFEMMK 237


>ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124359886|gb|ABD32760.2| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355485919|gb|AES67122.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 316

 Score =  134 bits (336), Expect = 1e-29
 Identities = 60/101 (59%), Positives = 76/101 (75%)
 Frame = -3

Query: 307 VNGFSYDVATCNALISMYCKCGDLVTARKVFDGMAERNLITWSAMIAGYGMHGFSSEVFK 128
           VNGF+ D+   NALI+MY KCG+L  ARKVFDGM ERN +TWS M+AGYGMHG   EVF+
Sbjct: 137 VNGFALDLKNSNALINMYAKCGELEFARKVFDGMCERNEVTWSTMMAGYGMHGRFEEVFE 196

Query: 127 LFEEMLDAGESPDGVTFTAILAACSHGGLTDMGRGLFKMME 5
           +F  M++ GE  D V+FT +L ACSHGG  + GR +F+MM+
Sbjct: 197 MFNRMVEVGERMDNVSFTVVLTACSHGGFVEKGREIFEMMK 237