BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021104
         (688 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containi...   128   1e-27
ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containi...   127   3e-27
ref|XP_002523877.1| pentatricopeptide repeat-containing protein,...   117   2e-24
ref|XP_003626823.1| Pentatricopeptide repeat-containing protein ...   105   8e-21
ref|XP_003596871.1| Pentatricopeptide repeat-containing protein ...   105   8e-21

>ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 313

 Score =  128 bits (321), Expect = 1e-27
 Identities = 61/82 (74%), Positives = 71/82 (86%)
 Frame = -3

Query: 686 FKMMEERFGVKPGLEHFTCMVDMLGRAGHVEEAEALISRIEVVPDDALWGALLGACKLHG 507
           F MMEERFGV+P LEH+TCMVDMLGRAG VEEAE LI  +EV PD+ALWGALL +CK+HG
Sbjct: 232 FGMMEERFGVRPRLEHYTCMVDMLGRAGRVEEAEELIEGMEVEPDEALWGALLASCKIHG 291

Query: 506 KMEVAERVAEKVYGRLESSSSV 441
           K+EVAERVAEKVYGR  + +S+
Sbjct: 292 KVEVAERVAEKVYGRRLNEASL 313


>ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 315

 Score =  127 bits (318), Expect = 3e-27
 Identities = 63/82 (76%), Positives = 69/82 (84%), Gaps = 1/82 (1%)
 Frame = -3

Query: 683 KMMEERFGVKPGLEHFTCMVDMLGRAGHVEEAEALISRIEVVPDDALWGALLGACKLHGK 504
           KMME RFGVKPGL H+TCMVDMLGR G VEEAE LI R+EV PD+ALWGALLGACK HGK
Sbjct: 234 KMMEVRFGVKPGLHHYTCMVDMLGRVGQVEEAEKLILRMEVKPDEALWGALLGACKTHGK 293

Query: 503 MEVAERVAEKVYGR-LESSSSV 441
           +EV ERV E+VYGR L  +SSV
Sbjct: 294 LEVTERVEERVYGRELSFASSV 315


>ref|XP_002523877.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536965|gb|EEF38603.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 302

 Score =  117 bits (293), Expect = 2e-24
 Identities = 52/73 (71%), Positives = 63/73 (86%)
 Frame = -3

Query: 686 FKMMEERFGVKPGLEHFTCMVDMLGRAGHVEEAEALISRIEVVPDDALWGALLGACKLHG 507
           F MMEERFGVKP LEH+TCMVDMLGRAG VEEAE L+ R+E+ PD+ LW ALLG+CK+HG
Sbjct: 229 FGMMEERFGVKPSLEHYTCMVDMLGRAGRVEEAEELVMRMEIKPDEVLWAALLGSCKIHG 288

Query: 506 KMEVAERVAEKVY 468
           K++VAERV+  V+
Sbjct: 289 KVDVAERVSRNVF 301


>ref|XP_003626823.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355520845|gb|AET01299.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 355

 Score =  105 bits (262), Expect = 8e-21
 Identities = 49/74 (66%), Positives = 61/74 (82%)
 Frame = -3

Query: 686 FKMMEERFGVKPGLEHFTCMVDMLGRAGHVEEAEALISRIEVVPDDALWGALLGACKLHG 507
           F+MM+ RFGVKP + H+TCMVDMLGR G VEEAE L  +++V PD+AL GAL GACK HG
Sbjct: 233 FEMMKVRFGVKPDVRHYTCMVDMLGRVGLVEEAEKLTLKMDVRPDEALVGALFGACKTHG 292

Query: 506 KMEVAERVAEKVYG 465
           +++VAERVAE+ YG
Sbjct: 293 RVDVAERVAERFYG 306


>ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124359886|gb|ABD32760.2| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355485919|gb|AES67122.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 316

 Score =  105 bits (262), Expect = 8e-21
 Identities = 49/74 (66%), Positives = 61/74 (82%)
 Frame = -3

Query: 686 FKMMEERFGVKPGLEHFTCMVDMLGRAGHVEEAEALISRIEVVPDDALWGALLGACKLHG 507
           F+MM+ RFGVKP + H+TCMVDMLGR G VEEAE L  +++V PD+AL GAL GACK HG
Sbjct: 233 FEMMKVRFGVKPDVRHYTCMVDMLGRVGLVEEAEKLTLKMDVRPDEALVGALFGACKTHG 292

Query: 506 KMEVAERVAEKVYG 465
           +++VAERVAE+ YG
Sbjct: 293 RVDVAERVAERFYG 306