BLASTX nr result

ID: Coptis24_contig00021089 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021089
         (1065 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516646.1| conserved hypothetical protein [Ricinus comm...   238   2e-60
ref|XP_003632167.1| PREDICTED: ataxin-7-like protein 3-like [Vit...   228   3e-57
ref|XP_004145247.1| PREDICTED: ataxin-7-like protein 3-like [Cuc...   225   1e-56
gb|ACU17014.1| unknown [Glycine max]                                  225   2e-56
ref|XP_002299995.1| predicted protein [Populus trichocarpa] gi|2...   216   8e-54

>ref|XP_002516646.1| conserved hypothetical protein [Ricinus communis]
           gi|223544218|gb|EEF45741.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 193

 Score =  238 bits (606), Expect = 2e-60
 Identities = 119/188 (63%), Positives = 144/188 (76%), Gaps = 1/188 (0%)
 Frame = -1

Query: 894 VPSEVVIHK*MSNPNDGDASSHSQMSSHVLDELLESIIVDVASECHRIAXXXXXXXXXXX 715
           +P++      MS PN+ + S H+Q+SSH   +LL+SIIVDVASECHRI            
Sbjct: 6   IPAQPTKENVMSVPNEDNMSPHTQLSSHFFGDLLDSIIVDVASECHRIVKLGLDRNLEEE 65

Query: 714 XXXXXLSTQARARVADPSHSGESNSKYVIDIFGQTHPAVANEIFECMNCGRSIMAGRFAP 535
                LSTQAR RVADPS SGE+NSKYV+DIFGQ+HP VANEIF+CMNCGRSIMAGRFAP
Sbjct: 66  EEELRLSTQARVRVADPSISGETNSKYVVDIFGQSHPPVANEIFDCMNCGRSIMAGRFAP 125

Query: 534 HLEKCMGKGRKARLKTTRSSTATQSRNTRGSPGSTHSPYSNSTNVNRVANGTA-LPGEDY 358
           HLEKCMGKGRKARLK TRSSTA Q+R++RGSP ST+SPYSNS++ NR++NGT  L GE+Y
Sbjct: 126 HLEKCMGKGRKARLKATRSSTAAQNRHSRGSPVSTYSPYSNSSSANRLSNGTPNLAGEEY 185

Query: 357 GEGAFEDT 334
             G  +++
Sbjct: 186 SNGTLDES 193


>ref|XP_003632167.1| PREDICTED: ataxin-7-like protein 3-like [Vitis vinifera]
           gi|297745862|emb|CBI15918.3| unnamed protein product
           [Vitis vinifera]
          Length = 176

 Score =  228 bits (580), Expect = 3e-57
 Identities = 117/177 (66%), Positives = 138/177 (77%), Gaps = 1/177 (0%)
 Frame = -1

Query: 864 MSNPNDGDASSHSQMSSHVLDELLESIIVDVASECHRIAXXXXXXXXXXXXXXXXLSTQA 685
           MS PN+   SS  Q+SSH   +LL+SIIVDVASECHRIA                LS QA
Sbjct: 1   MSAPNEDTMSS--QLSSHFFGDLLDSIIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 58

Query: 684 RARVADPSHSGESNSKYVIDIFGQTHPAVANEIFECMNCGRSIMAGRFAPHLEKCMGKGR 505
           R RVADPS+SGE+NSKYV+DIFGQ+HPA+A+EIFECMNCGRSIMAGRFAPHLEKCMGKGR
Sbjct: 59  RVRVADPSNSGEANSKYVVDIFGQSHPAIASEIFECMNCGRSIMAGRFAPHLEKCMGKGR 118

Query: 504 KARLKTTRSSTATQSRNTRGSPGSTHSPYSNSTNVNRVANGT-ALPGEDYGEGAFED 337
           KARLK TRSSTA Q+R +RGSP S++SPYSNST+ +R++NGT  + GE+Y  G  E+
Sbjct: 119 KARLKATRSSTAAQNRYSRGSPVSSYSPYSNSTSTSRLSNGTPGVGGEEYSNGTLEE 175


>ref|XP_004145247.1| PREDICTED: ataxin-7-like protein 3-like [Cucumis sativus]
           gi|449472868|ref|XP_004153719.1| PREDICTED:
           ataxin-7-like protein 3-like [Cucumis sativus]
           gi|449529992|ref|XP_004171981.1| PREDICTED:
           ataxin-7-like protein 3-like [Cucumis sativus]
          Length = 178

 Score =  225 bits (574), Expect = 1e-56
 Identities = 113/177 (63%), Positives = 136/177 (76%), Gaps = 1/177 (0%)
 Frame = -1

Query: 864 MSNPNDGDASSHSQMSSHVLDELLESIIVDVASECHRIAXXXXXXXXXXXXXXXXLSTQA 685
           MS PN+ +ASS +Q+SS++  +LL+S+IVD+ASECHRIA                LS QA
Sbjct: 1   MSMPNEDNASSQTQLSSNLFGDLLDSVIVDIASECHRIARLGLDRNLEEEEEELRLSAQA 60

Query: 684 RARVADPSHSGESNSKYVIDIFGQTHPAVANEIFECMNCGRSIMAGRFAPHLEKCMGKGR 505
           R RVAD S+S E+N KYV+DIFGQTHP+VANEIF+CMNCGRSIMAGRFAPHLEKCMG+GR
Sbjct: 61  RVRVADSSNSSEANGKYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120

Query: 504 KARLKTTRSSTATQSRNTRGSPGSTHSPYSNSTNVNRVANGT-ALPGEDYGEGAFED 337
           KAR K TRSSTA QSR +RG+P S +SPY NST+ NR+ NGT +L GE+Y  G  ED
Sbjct: 121 KARPKVTRSSTAAQSRYSRGNPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSED 177


>gb|ACU17014.1| unknown [Glycine max]
          Length = 181

 Score =  225 bits (573), Expect = 2e-56
 Identities = 120/180 (66%), Positives = 139/180 (77%), Gaps = 5/180 (2%)
 Frame = -1

Query: 864 MSNPNDGDASSHSQMSSHVLDELLESIIVDVASECHRIAXXXXXXXXXXXXXXXXLSTQA 685
           MS PN+ + SSHSQ+SSH   +LL+SIIVDVASECHR+A                LS QA
Sbjct: 1   MSVPNEENLSSHSQLSSHFFLDLLDSIIVDVASECHRVARLGLDSNLEEEDEELKLSAQA 60

Query: 684 RARVADPSHSGESNSKYVIDIFGQTHPAVANEIFECMNCGRSIMAGRFAPHLEKCMGKGR 505
           R RVADPS+S E+N KYV+DIFGQTHP VANEIF+CMNCGRSIMAGRFAPHLEKCMGKGR
Sbjct: 61  RVRVADPSNSNEANGKYVVDIFGQTHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGKGR 120

Query: 504 KARLKTTRSSTATQSRNTRG--SPGSTHSPYSN-STN-VNRVANGTA-LPGEDYGEGAFE 340
           KARLK TRSSTA Q+R +RG  SPGST+SPYSN STN +N++ANGT+   GE++  G  E
Sbjct: 121 KARLKVTRSSTAAQNRYSRGSPSPGSTYSPYSNYSTNSMNQLANGTSTFAGEEHSNGTLE 180


>ref|XP_002299995.1| predicted protein [Populus trichocarpa] gi|222847253|gb|EEE84800.1|
           predicted protein [Populus trichocarpa]
          Length = 178

 Score =  216 bits (550), Expect = 8e-54
 Identities = 110/176 (62%), Positives = 129/176 (73%), Gaps = 1/176 (0%)
 Frame = -1

Query: 864 MSNPNDGDASSHSQMSSHVLDELLESIIVDVASECHRIAXXXXXXXXXXXXXXXXLSTQA 685
           MS PN+ + S H Q+SSH   +LL+SIIVDVASECHR+A                LS QA
Sbjct: 1   MSVPNEDNMSPHMQLSSHFFGDLLDSIIVDVASECHRVARLGLDRNLEEEEEELRLSAQA 60

Query: 684 RARVADPSHSGESNSKYVIDIFGQTHPAVANEIFECMNCGRSIMAGRFAPHLEKCMGKGR 505
           R  VADPS+SGE+N KYV+DIFGQTHP VANE+F+CMNCGR I+AGRFAPHLEKCMGKGR
Sbjct: 61  RVTVADPSNSGETNGKYVVDIFGQTHPCVANEVFDCMNCGRPIVAGRFAPHLEKCMGKGR 120

Query: 504 KARLKTTRSSTATQSRNTRGSPGSTHSPYSNSTNVNRVANGT-ALPGEDYGEGAFE 340
           KAR K TRSSTA Q+R +RGSP S +SP SNST+ NR+ NGT +   E+Y  G  E
Sbjct: 121 KARAKATRSSTAAQNRYSRGSPVSANSPCSNSTSTNRLLNGTYSHTVEEYSNGTCE 176


Top