BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021061
         (916 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26162.3| unnamed protein product [Vitis vinifera]              213   4e-53
ref|XP_003617724.1| Pentatricopeptide repeat-containing protein ...   202   1e-49
ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containi...   200   3e-49
ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containi...   196   5e-48
ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containi...   196   5e-48

>emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  213 bits (543), Expect = 4e-53
 Identities = 116/284 (40%), Positives = 160/284 (56%), Gaps = 3/284 (1%)
 Frame = +1

Query: 70  SPSSIFIFLRQRFQNQPKSRNFTTAISEGNNN---IXXXXXXXXXXXXXXIAKQVSKTIR 240
           S SS+  FLRQ     P SR     +  GN                    I K+VS   R
Sbjct: 51  SSSSVISFLRQN----PNSRIRNLGVVSGNQYGDVEGAHQHTQQQQHLEEIVKRVSDITR 106

Query: 241 VQPRWEKTLLCDYPPSVLLTTHCVEQVIKSTNNALLSYRFFRWVCSRNGFTPDSRCCNAV 420
            +PRWE+TLL D+P    L    +   ++   NAL+S RFF W+ S++GF+PDS  CN +
Sbjct: 107 TRPRWEQTLLSDFPSFNFLDPTFLSHFVEHQKNALISLRFFHWLSSQSGFSPDSSSCNVL 166

Query: 421 FDVLVQAKASKVAKMLIGDMDFVPDIGSLELFVVCLCEDGDVDEGFEFFLYLRKAGYVPS 600
           FD LV+A A   AK  +   +F P   SLE ++ CLC+ G V+E    F  L+  G   S
Sbjct: 167 FDALVEAGACNAAKSFLDSTNFNPKPASLEAYIRCLCKGGLVEEAISVFGQLKGIGVCAS 226

Query: 601 LGVCNNMLSGCLGAERSDVVWKFYGEMMECGLGGDADTVGYLIRAYCADNKCFEAYELLK 780
           +   N++L G + A R D VW+ YGEM+E  +  D  TVGYL++A+C +N+  + + LL+
Sbjct: 227 IATWNSVLRGSVRAGRIDFVWELYGEMVESSVVADVHTVGYLVQAFCDENRISDGHNLLR 286

Query: 781 QVLESGFVPHGIVFCKLIARFCKVRDYGKVSELLHLMIAKNCAP 912
           +VLE G VP    F KLI+ FCK + YG+VS+LLH MIA+N AP
Sbjct: 287 RVLEDGVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIARNRAP 330


>ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355519059|gb|AET00683.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 861

 Score =  202 bits (513), Expect = 1e-49
 Identities = 114/271 (42%), Positives = 147/271 (54%), Gaps = 2/271 (0%)
 Frame = +1

Query: 109 QNQPKSRNFTTAISEGNNNIXXXXXXXXXXXXXXIAKQVSKTIRVQPRWEKTLLCDYPPS 288
           +  PK +NFT  ++E                       +    R +PRWE TL+  YP  
Sbjct: 23  KQDPKDQNFTQTLNE-----------------------ICTITRSKPRWENTLISQYPSF 59

Query: 289 VLLTTHCVEQVIKSTNNALLSYRFFRWVCSRNGFTPDSRCCNAVFDVLVQAKASKVAKML 468
                      +K  NN  LS RF  W+ S  GF PD   CNA+FD LV A A K AK L
Sbjct: 60  NFSNPKFFLSYLKHQNNTFLSLRFLHWLTSHCGFKPDQSSCNALFDALVDAGAVKAAKSL 119

Query: 469 IGDMDFVPDIGSLELFVVCLCEDGDVDEGFEFFLYLRKAGYVPSLGVCNNMLSGCLGAER 648
           +   DFVP   SLE +V  L E+G V+E F+ F+ L+K G++PS    N  L  CL   R
Sbjct: 120 LEYPDFVPKNDSLEGYVRLLGENGMVEEVFDVFVSLKKVGFLPSASSFNVCLLACLKVGR 179

Query: 649 SDVVWKFYGEMMECGLGG--DADTVGYLIRAYCADNKCFEAYELLKQVLESGFVPHGIVF 822
           +D+VWK Y  M+E G+G   D +TVG LI+A+CA+NK F  YELL+QVLE G      VF
Sbjct: 180 TDLVWKLYELMIESGVGVNIDVETVGCLIKAFCAENKVFNGYELLRQVLEKGLCVDNTVF 239

Query: 823 CKLIARFCKVRDYGKVSELLHLMIAKNCAPT 915
             LI  FCK + Y +VSE+LH+MIA  C P+
Sbjct: 240 NALINGFCKQKQYDRVSEILHIMIAMKCNPS 270


>ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Glycine max]
          Length = 577

 Score =  200 bits (509), Expect = 3e-49
 Identities = 103/233 (44%), Positives = 140/233 (60%), Gaps = 2/233 (0%)
 Frame = +1

Query: 220 QVSKTIRVQPRWEKTLLCDYPPSVLLTTHCVEQVIKSTNNALLSYRFFRWVCSRNGFTPD 399
           ++ +  R +PRWE TLL  YP             +K  NNA LS RFF W+CS  GF+PD
Sbjct: 53  EICRITRTKPRWEDTLLSQYPSFNFKDPSFFLLYLKHQNNAFLSLRFFHWLCSSCGFSPD 112

Query: 400 SRCCNAVFDVLVQAKASKVAKMLIGDMDFVPDIGSLELFVVCLCEDGDVDEGFEFFLYLR 579
              CN +F VLV A A K+AK L+    F P+  SLE ++ CL   G V++  +    L+
Sbjct: 113 QSSCNVLFQVLVDAGAGKLAKSLLDSPGFTPEPASLEGYIQCLSGAGMVEDAVDM---LK 169

Query: 580 KAGYVPSLGVCNNMLSGCLGAERSDVVWKFYGEMMECGLGG--DADTVGYLIRAYCADNK 753
           +  + PS+   N  L GCL A R+D+VW  Y +MME G+    + +TVGYLI A+CA+ K
Sbjct: 170 RVVFCPSVATWNASLLGCLRARRTDLVWTLYEQMMESGVVASINVETVGYLIMAFCAEYK 229

Query: 754 CFEAYELLKQVLESGFVPHGIVFCKLIARFCKVRDYGKVSELLHLMIAKNCAP 912
             + YELLK++LE+G  P  +VF +LI  FCK   Y +VSE+LH+MIAK C P
Sbjct: 230 VLKGYELLKELLENGLCPDNVVFNELIRGFCKEGQYDRVSEILHIMIAKQCNP 282


>ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score =  196 bits (499), Expect = 5e-48
 Identities = 104/236 (44%), Positives = 140/236 (59%), Gaps = 2/236 (0%)
 Frame = +1

Query: 211 IAKQVSKTIRVQPRWEKTLLCDYPPSVLLTTHCVEQVIKSTNNALLSYRFFRWVCSRNGF 390
           IA +V K IR +PRWE++LL DYP           +++K  NN  LS RFF W+ S+  F
Sbjct: 96  IAAEVGKVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNVFLSLRFFLWLSSQPEF 155

Query: 391 TPDSRCCNAVFDVLVQAKASKVAKMLIGDMDFVPDIGSLELFVVCLCEDGDVDEGFEFFL 570
            P    CN +FD L++AKA   AK  +   +F P+  SLE ++ C+CE G V+E    F 
Sbjct: 156 LPHPVSCNKLFDALLEAKACVPAKSFLYSFEFSPEPASLENYIRCVCEGGLVEEAVYTFD 215

Query: 571 YLRKAGYVPSLGVCNNMLSGCLGAERSDVVWKFYGEMMECGLGGDAD--TVGYLIRAYCA 744
            L++AGY P +   N     CL   R+D++WK Y  MME G+  D D  TVGYLI+A+C 
Sbjct: 216 MLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVGYLIQAFCN 275

Query: 745 DNKCFEAYELLKQVLESGFVPHGIVFCKLIARFCKVRDYGKVSELLHLMIAKNCAP 912
           DNK   AYE+L+Q LE G  P    F KLI+ FCK +++ +V EL+H MI KN  P
Sbjct: 276 DNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNP 331



 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 35/146 (23%), Positives = 68/146 (46%)
 Frame = +1

Query: 475 DMDFVPDIGSLELFVVCLCEDGDVDEGFEFFLYLRKAGYVPSLGVCNNMLSGCLGAERSD 654
           D  F+P+  S    +   C+ G++DE  + +  +  +GY  +   CN ++ G     R+D
Sbjct: 396 DKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTD 455

Query: 655 VVWKFYGEMMECGLGGDADTVGYLIRAYCADNKCFEAYELLKQVLESGFVPHGIVFCKLI 834
             + F+ EM    +  D  T   LI+ +C + K  ++ +LLK++   G  P    +  LI
Sbjct: 456 EAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLI 515

Query: 835 ARFCKVRDYGKVSELLHLMIAKNCAP 912
            + C++    +  E+ + M  +   P
Sbjct: 516 QKLCQLGSVQEAKEMWNDMHNRGLQP 541


>ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 602

 Score =  196 bits (499), Expect = 5e-48
 Identities = 104/236 (44%), Positives = 140/236 (59%), Gaps = 2/236 (0%)
 Frame = +1

Query: 211 IAKQVSKTIRVQPRWEKTLLCDYPPSVLLTTHCVEQVIKSTNNALLSYRFFRWVCSRNGF 390
           IA +V K IR +PRWE++LL DYP           +++K  NN  LS RFF W+ S+  F
Sbjct: 60  IAAEVGKVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNVFLSLRFFLWLSSQPEF 119

Query: 391 TPDSRCCNAVFDVLVQAKASKVAKMLIGDMDFVPDIGSLELFVVCLCEDGDVDEGFEFFL 570
            P    CN +FD L++AKA   AK  +   +F P+  SLE ++ C+CE G V+E    F 
Sbjct: 120 LPHPVSCNKLFDALLEAKACVPAKSFLYSFEFSPEPASLENYIRCVCEGGLVEEAVYTFD 179

Query: 571 YLRKAGYVPSLGVCNNMLSGCLGAERSDVVWKFYGEMMECGLGGDAD--TVGYLIRAYCA 744
            L++AGY P +   N     CL   R+D++WK Y  MME G+  D D  TVGYLI+A+C 
Sbjct: 180 MLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVGYLIQAFCN 239

Query: 745 DNKCFEAYELLKQVLESGFVPHGIVFCKLIARFCKVRDYGKVSELLHLMIAKNCAP 912
           DNK   AYE+L+Q LE G  P    F KLI+ FCK +++ +V EL+H MI KN  P
Sbjct: 240 DNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNP 295



 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 35/146 (23%), Positives = 68/146 (46%)
 Frame = +1

Query: 475 DMDFVPDIGSLELFVVCLCEDGDVDEGFEFFLYLRKAGYVPSLGVCNNMLSGCLGAERSD 654
           D  F+P+  S    +   C+ G++DE  + +  +  +GY  +   CN ++ G     R+D
Sbjct: 360 DKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTD 419

Query: 655 VVWKFYGEMMECGLGGDADTVGYLIRAYCADNKCFEAYELLKQVLESGFVPHGIVFCKLI 834
             + F+ EM    +  D  T   LI+ +C + K  ++ +LLK++   G  P    +  LI
Sbjct: 420 EAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLI 479

Query: 835 ARFCKVRDYGKVSELLHLMIAKNCAP 912
            + C++    +  E+ + M  +   P
Sbjct: 480 QKLCQLGSVQEAKEMWNDMHNRGLQP 505