BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021053
         (483 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546871.1| PREDICTED: 60S ribosomal protein L6-like [Gl...    44   1e-06
ref|XP_004150161.1| PREDICTED: 60S ribosomal protein L6-like [Cu...    48   1e-06
ref|XP_002513192.1| 60S ribosomal protein L6, putative [Ricinus ...    47   2e-06
ref|XP_004149609.1| PREDICTED: 60S ribosomal protein L6-like [Cu...    45   2e-06
ref|XP_003531428.1| PREDICTED: 60S ribosomal protein L6-like [Gl...    44   3e-06

>ref|XP_003546871.1| PREDICTED: 60S ribosomal protein L6-like [Glycine max]
          Length = 232

 Score = 44.3 bits (103), Expect(2) = 1e-06
 Identities = 30/51 (58%), Positives = 33/51 (64%), Gaps = 7/51 (13%)
 Frame = +3

Query: 279 PADEVKKPFVNNRKHQP--LRATF----*LYWLEG-FKGKRVVFLKQLSFG 410
           PAD+VKKP VN  K +P  LRA+      L  L G FKGKRVVFLKQL  G
Sbjct: 65  PADDVKKPLVNKHKPKPAKLRASITPGTVLILLAGRFKGKRVVFLKQLPSG 115



 Score = 33.1 bits (74), Expect(2) = 1e-06
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 14/52 (26%)
 Frame = +1

Query: 157 KARVSSRNPDQGV*LG--------------IIQAKNGGVSPRHDN*KPAPKA 270
           K R ++RNPD    +G               I+AKNGGV PRHD  KP P+A
Sbjct: 5   KPRTTTRNPDLVRGIGKYSRSQMYHKRGIWAIKAKNGGVLPRHDP-KPKPEA 55


>ref|XP_004150161.1| PREDICTED: 60S ribosomal protein L6-like [Cucumis sativus]
          Length = 231

 Score = 48.1 bits (113), Expect(2) = 1e-06
 Identities = 27/51 (52%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
 Frame = +3

Query: 279 PADEVKKPFVNNRKHQPLR-------ATF*LYWLEGFKGKRVVFLKQLSFG 410
           PAD+VKKP VN RK +P +        T  +     FKGKRVVFLKQL FG
Sbjct: 64  PADDVKKPLVNKRKPKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPFG 114



 Score = 29.3 bits (64), Expect(2) = 1e-06
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 14/47 (29%)
 Frame = +1

Query: 148 LVPKARVSSRNPD--QGV*------------LGIIQAKNGGVSPRHD 246
           + PK    SRNP+  +GV             L  I+AKNGGV PRHD
Sbjct: 1   MAPKTARVSRNPELIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHD 47


>ref|XP_002513192.1| 60S ribosomal protein L6, putative [Ricinus communis]
           gi|223547690|gb|EEF49183.1| 60S ribosomal protein L6,
           putative [Ricinus communis]
          Length = 233

 Score = 46.6 bits (109), Expect(2) = 2e-06
 Identities = 31/51 (60%), Positives = 35/51 (68%), Gaps = 7/51 (13%)
 Frame = +3

Query: 279 PADEVKKPFVNNRKHQP--LRATF*----LYWLEG-FKGKRVVFLKQLSFG 410
           PAD+VKKP +N RK +P  LRA+      L  L G FKGKRVVFLKQLS G
Sbjct: 66  PADDVKKPLLNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSG 116



 Score = 29.6 bits (65), Expect(2) = 2e-06
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 199 LGIIQAKNGGVSPRHDN*KPAPKA 270
           L  I+AKNGGV P+HD  KP P A
Sbjct: 34  LWAIKAKNGGVFPKHDP-KPKPAA 56


>ref|XP_004149609.1| PREDICTED: 60S ribosomal protein L6-like [Cucumis sativus]
           gi|449533212|ref|XP_004173570.1| PREDICTED: 60S
           ribosomal protein L6-like [Cucumis sativus]
          Length = 231

 Score = 45.1 bits (105), Expect(2) = 2e-06
 Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
 Frame = +3

Query: 279 PADEVKKPFVNNRKHQPLR-------ATF*LYWLEGFKGKRVVFLKQLSFG 410
           PAD+VKKP VN RK +P +        T  +     FKGKRVVFLKQL  G
Sbjct: 64  PADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSG 114



 Score = 31.2 bits (69), Expect(2) = 2e-06
 Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
 Frame = +1

Query: 148 LVPKARVSSRNPD--QGV*------------LGIIQAKNGGVSPRHDN*KPAPKA 270
           + PK    SRNPD  +GV             L  I+AKNGGV PRHD  KP  +A
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA-KPKAEA 54


>ref|XP_003531428.1| PREDICTED: 60S ribosomal protein L6-like [Glycine max]
          Length = 232

 Score = 44.3 bits (103), Expect(2) = 3e-06
 Identities = 30/51 (58%), Positives = 33/51 (64%), Gaps = 7/51 (13%)
 Frame = +3

Query: 279 PADEVKKPFVNNRKHQP--LRATF----*LYWLEG-FKGKRVVFLKQLSFG 410
           PAD+VKKP VN  K +P  LRA+      L  L G FKGKRVVFLKQL  G
Sbjct: 65  PADDVKKPLVNKHKPKPAKLRASITPGTVLILLAGRFKGKRVVFLKQLPSG 115



 Score = 31.6 bits (70), Expect(2) = 3e-06
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 14/52 (26%)
 Frame = +1

Query: 157 KARVSSRNPDQGV*LG--------------IIQAKNGGVSPRHDN*KPAPKA 270
           K R +SRNPD    +G               I+AKNGGV P HD  KP P+A
Sbjct: 5   KPRTTSRNPDLVRGIGKYSRSQMYHKRGIWAIKAKNGGVLPLHDP-KPKPEA 55