BLASTX nr result
ID: Coptis24_contig00021053
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00021053 (483 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003546871.1| PREDICTED: 60S ribosomal protein L6-like [Gl... 44 1e-06 ref|XP_004150161.1| PREDICTED: 60S ribosomal protein L6-like [Cu... 48 1e-06 ref|XP_002513192.1| 60S ribosomal protein L6, putative [Ricinus ... 47 2e-06 ref|XP_004149609.1| PREDICTED: 60S ribosomal protein L6-like [Cu... 45 2e-06 ref|XP_003531428.1| PREDICTED: 60S ribosomal protein L6-like [Gl... 44 3e-06 >ref|XP_003546871.1| PREDICTED: 60S ribosomal protein L6-like [Glycine max] Length = 232 Score = 44.3 bits (103), Expect(2) = 1e-06 Identities = 30/51 (58%), Positives = 33/51 (64%), Gaps = 7/51 (13%) Frame = +3 Query: 279 PADEVKKPFVNNRKHQP--LRATF----*LYWLEG-FKGKRVVFLKQLSFG 410 PAD+VKKP VN K +P LRA+ L L G FKGKRVVFLKQL G Sbjct: 65 PADDVKKPLVNKHKPKPAKLRASITPGTVLILLAGRFKGKRVVFLKQLPSG 115 Score = 33.1 bits (74), Expect(2) = 1e-06 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 14/52 (26%) Frame = +1 Query: 157 KARVSSRNPDQGV*LG--------------IIQAKNGGVSPRHDN*KPAPKA 270 K R ++RNPD +G I+AKNGGV PRHD KP P+A Sbjct: 5 KPRTTTRNPDLVRGIGKYSRSQMYHKRGIWAIKAKNGGVLPRHDP-KPKPEA 55 >ref|XP_004150161.1| PREDICTED: 60S ribosomal protein L6-like [Cucumis sativus] Length = 231 Score = 48.1 bits (113), Expect(2) = 1e-06 Identities = 27/51 (52%), Positives = 31/51 (60%), Gaps = 7/51 (13%) Frame = +3 Query: 279 PADEVKKPFVNNRKHQPLR-------ATF*LYWLEGFKGKRVVFLKQLSFG 410 PAD+VKKP VN RK +P + T + FKGKRVVFLKQL FG Sbjct: 64 PADDVKKPLVNKRKPKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPFG 114 Score = 29.3 bits (64), Expect(2) = 1e-06 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 14/47 (29%) Frame = +1 Query: 148 LVPKARVSSRNPD--QGV*------------LGIIQAKNGGVSPRHD 246 + PK SRNP+ +GV L I+AKNGGV PRHD Sbjct: 1 MAPKTARVSRNPELIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHD 47 >ref|XP_002513192.1| 60S ribosomal protein L6, putative [Ricinus communis] gi|223547690|gb|EEF49183.1| 60S ribosomal protein L6, putative [Ricinus communis] Length = 233 Score = 46.6 bits (109), Expect(2) = 2e-06 Identities = 31/51 (60%), Positives = 35/51 (68%), Gaps = 7/51 (13%) Frame = +3 Query: 279 PADEVKKPFVNNRKHQP--LRATF*----LYWLEG-FKGKRVVFLKQLSFG 410 PAD+VKKP +N RK +P LRA+ L L G FKGKRVVFLKQLS G Sbjct: 66 PADDVKKPLLNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSG 116 Score = 29.6 bits (65), Expect(2) = 2e-06 Identities = 15/24 (62%), Positives = 17/24 (70%) Frame = +1 Query: 199 LGIIQAKNGGVSPRHDN*KPAPKA 270 L I+AKNGGV P+HD KP P A Sbjct: 34 LWAIKAKNGGVFPKHDP-KPKPAA 56 >ref|XP_004149609.1| PREDICTED: 60S ribosomal protein L6-like [Cucumis sativus] gi|449533212|ref|XP_004173570.1| PREDICTED: 60S ribosomal protein L6-like [Cucumis sativus] Length = 231 Score = 45.1 bits (105), Expect(2) = 2e-06 Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 7/51 (13%) Frame = +3 Query: 279 PADEVKKPFVNNRKHQPLR-------ATF*LYWLEGFKGKRVVFLKQLSFG 410 PAD+VKKP VN RK +P + T + FKGKRVVFLKQL G Sbjct: 64 PADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSG 114 Score = 31.2 bits (69), Expect(2) = 2e-06 Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 14/55 (25%) Frame = +1 Query: 148 LVPKARVSSRNPD--QGV*------------LGIIQAKNGGVSPRHDN*KPAPKA 270 + PK SRNPD +GV L I+AKNGGV PRHD KP +A Sbjct: 1 MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA-KPKAEA 54 >ref|XP_003531428.1| PREDICTED: 60S ribosomal protein L6-like [Glycine max] Length = 232 Score = 44.3 bits (103), Expect(2) = 3e-06 Identities = 30/51 (58%), Positives = 33/51 (64%), Gaps = 7/51 (13%) Frame = +3 Query: 279 PADEVKKPFVNNRKHQP--LRATF----*LYWLEG-FKGKRVVFLKQLSFG 410 PAD+VKKP VN K +P LRA+ L L G FKGKRVVFLKQL G Sbjct: 65 PADDVKKPLVNKHKPKPAKLRASITPGTVLILLAGRFKGKRVVFLKQLPSG 115 Score = 31.6 bits (70), Expect(2) = 3e-06 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 14/52 (26%) Frame = +1 Query: 157 KARVSSRNPDQGV*LG--------------IIQAKNGGVSPRHDN*KPAPKA 270 K R +SRNPD +G I+AKNGGV P HD KP P+A Sbjct: 5 KPRTTSRNPDLVRGIGKYSRSQMYHKRGIWAIKAKNGGVLPLHDP-KPKPEA 55