BLASTX nr result
ID: Coptis24_contig00021017
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00021017 (609 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2... 80 3e-13 ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ... 79 5e-13 ref|XP_002510609.1| conserved hypothetical protein [Ricinus comm... 77 2e-12 ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ... 75 9e-12 emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] 75 9e-12 >ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1| predicted protein [Populus trichocarpa] Length = 393 Score = 80.1 bits (196), Expect = 3e-13 Identities = 49/140 (35%), Positives = 80/140 (57%), Gaps = 3/140 (2%) Frame = -1 Query: 456 SQLPQHILDLIPKKIDTLDDLIRFSWVCKTWRLSALPLLPSNLFNK-PWLIVPYTNDHVS 280 +QLP ++++I KKI D + F VC W+ S++P P++L + PWL++P + + S Sbjct: 6 TQLPPELIEIISKKITIYSDYLHFQAVCHAWK-SSIPKTPNHLPPQLPWLLLPQSQSNQS 64 Query: 279 KTGTACDKTLGFFDLSTRKLYKVDLPEIANHR--ICGSCRGGWLVTVNSFGDIQLLHPFA 106 FF+LST K + ++LPE A+HR CGS GWL+ ++ I +++P Sbjct: 65 SYRA-------FFNLSTYKFHSLNLPE-ASHRKKHCGSSH-GWLIILDDSPSILVINPLT 115 Query: 105 RKVISLAPVTALPGVVSCYY 46 R+ I L +++ P VVS Y Sbjct: 116 RRKIHLPAISSFPNVVSFDY 135 >ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase, putative [Ricinus communis] Length = 398 Score = 79.3 bits (194), Expect = 5e-13 Identities = 47/141 (33%), Positives = 80/141 (56%), Gaps = 2/141 (1%) Frame = -1 Query: 456 SQLPQHILDLIPKKIDTLDDLIRFSWVCKTWRLSALPLLPSNLFNK-PWLIVPYTNDHVS 280 SQLP ++++I K + D + VC WR S +P P++L + PWL++P + + Sbjct: 6 SQLPPELIEIISKGLTIYSDYLYSRAVCHAWRFS-IPKTPNHLPPQLPWLMLPQSQSQSN 64 Query: 279 KTGTACDKTLGFFDLSTRKLYKVDLPEIA-NHRICGSCRGGWLVTVNSFGDIQLLHPFAR 103 ++ A FF LST K + ++LPE++ R CGS GWL+ ++ I L++P R Sbjct: 65 QSRRA------FFSLSTNKFHFLNLPEVSYRKRHCGSSH-GWLMILDDTPTILLINPLTR 117 Query: 102 KVISLAPVTALPGVVSCYYNE 40 +SL P+++ P V+S Y++ Sbjct: 118 AKLSLPPLSSFPNVISFNYSD 138 >ref|XP_002510609.1| conserved hypothetical protein [Ricinus communis] gi|223551310|gb|EEF52796.1| conserved hypothetical protein [Ricinus communis] Length = 406 Score = 77.4 bits (189), Expect = 2e-12 Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 3/152 (1%) Frame = -1 Query: 456 SQLPQHILDLIPKKIDTLDDLIRFSWVCKTWRLSALPLLPSNLFNK-PWLIVPYTNDHVS 280 S+LPQ +L I +K D I VCK+W SA+P P +L + PWL++P+ D+ + Sbjct: 5 SELPQELLQTITQKQTNYVDYISTRAVCKSW-WSAIPKKPHDLLCRLPWLLLPHHKDNPN 63 Query: 279 KTGTACDKTLGFFDLSTRKLYKVDLPEIANHRICGSCRGGWLVTVNSFGDIQLLHPFARK 100 G F++ S K Y ++LPE + R CGS GWLV V I LL+P + Sbjct: 64 HRG--------FYNPSDGKTYHLELPETVDKRCCGSSH-GWLVMVEDTPSIFLLNPLTKS 114 Query: 99 VISLAPVTALPGVVS--CYYNERQNLVYDVKN 10 I L ++ P + Y N R Y ++N Sbjct: 115 RIELPSLSTFPNFPTEVIYQNSRNLNEYFIRN 146 >ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera] Length = 389 Score = 75.1 bits (183), Expect = 9e-12 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Frame = -1 Query: 456 SQLPQHILDLIPKKIDTLDDLIRFSWVCKTWRLSALPLLPSNLFNK-PWLIVPYTNDHVS 280 SQL +LD I KK D +RF VC WR S +P P +L + PWL++P + H + Sbjct: 5 SQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRAS-VPKTPHHLPTQLPWLMLPQSQPHHT 63 Query: 279 KTGTACDKTLGFFDLSTRKLYKVDLPEIANHRICGSCRGGWLVTVNSFGDIQLLHPFARK 100 FF LS K + + LPE ++ R GWL+ ++ +I LL+P R Sbjct: 64 HRP--------FFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLTRS 115 Query: 99 VISLAPVTALPGVV 58 + L P++ P VV Sbjct: 116 KVHLPPLSTFPNVV 129 >emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] Length = 389 Score = 75.1 bits (183), Expect = 9e-12 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Frame = -1 Query: 456 SQLPQHILDLIPKKIDTLDDLIRFSWVCKTWRLSALPLLPSNLFNK-PWLIVPYTNDHVS 280 SQL +LD I KK D +RF VC WR S +P P +L + PWL++P + H + Sbjct: 5 SQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRAS-VPKTPHHLPTQLPWLMLPQSQPHHT 63 Query: 279 KTGTACDKTLGFFDLSTRKLYKVDLPEIANHRICGSCRGGWLVTVNSFGDIQLLHPFARK 100 FF LS K + + LPE ++ R GWL+ ++ +I LL+P R Sbjct: 64 HRP--------FFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLTRS 115 Query: 99 VISLAPVTALPGVV 58 + L P++ P VV Sbjct: 116 KVHLPPLSTFPNVV 129