BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020958
         (1283 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529848.1| DNA repair and recombination protein RAD26, ...   442   e-122
ref|XP_002307656.1| chromatin remodeling complex subunit [Populu...   424   e-116
ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-...   423   e-116
ref|XP_003541362.1| PREDICTED: DNA repair and recombination prot...   422   e-116
emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]   419   e-115

>ref|XP_002529848.1| DNA repair and recombination protein RAD26, putative [Ricinus
            communis] gi|223530676|gb|EEF32549.1| DNA repair and
            recombination protein RAD26, putative [Ricinus communis]
          Length = 1230

 Score =  442 bits (1137), Expect = e-122
 Identities = 239/374 (63%), Positives = 278/374 (74%), Gaps = 4/374 (1%)
 Frame = -2

Query: 1282 TIYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQRRFFKARDMKDLFTLQDDAVGGLTE 1103
            T+YRLITRGTIEEKVYHRQIYKHFLTNK+LKNPQQRRFFKARDMKDLFTL DD   GLTE
Sbjct: 862  TVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDLFTLNDDGGSGLTE 921

Query: 1102 TSNIFSQLSGDINVVQTHKESQDRNTTSSSAAIVSDDTEVGRGARSLVLEPSTTKGK--E 929
            TSNIFSQLS ++NVV   KE +D+      +A  +DD  + +   S  + PS  KGK  E
Sbjct: 922  TSNIFSQLSEEVNVVGAKKEKEDKKKHYKGSASHADDAALDK-ENSPEIGPSHRKGKGKE 980

Query: 928  KDDQKNEELDEETNVLQSLFDAHGIHSAMNHDVIMNAHDEEKMRLDEQASQVAQRAAEAL 749
            K +  + E+DEETN+L+SL DA GIHSA+NHD IMNAHDEEK RL+EQASQVAQRAAEAL
Sbjct: 981  KANHSDGEVDEETNILRSLIDAQGIHSAVNHDAIMNAHDEEKTRLEEQASQVAQRAAEAL 1040

Query: 748  RQSRMLRSRDSISVPTWTGRSGAAGAPSSVRKKFGSTVNSKLXXXXXXXXXXXXSLTSKP 569
            RQSRMLRS DS+SVPTWTG+SG AGAPSSVR+KFGSTVNS+L              TS  
Sbjct: 1041 RQSRMLRSHDSVSVPTWTGKSGTAGAPSSVRRKFGSTVNSQLIRSSDVSSNK----TSSM 1096

Query: 568  NXXXXXXXXXXXXXXAEFLARIRGTQEIAVGSGFEHQFDLASSSSNR--NQPSTTNKPSR 395
            N              AE LARIRG QE AVG+G E QF LAS+S+NR  ++ +  ++PS+
Sbjct: 1097 NGMGVGASAGKALSSAELLARIRGNQERAVGAGLEQQFGLASTSANRAGSENNGVSRPSK 1156

Query: 394  SSYSTQPEILIRHICTFIQQNGGSTTSSSVVAHFKERIPSKDLALFKNLLMEIATLEKRP 215
            +    QPEILIR ICTFIQQ GG T S+++V HFK+RI  KD+ LFKNLL EIATLEK P
Sbjct: 1157 NLSGVQPEILIRKICTFIQQRGGITDSATIVNHFKDRILEKDMPLFKNLLKEIATLEKDP 1216

Query: 214  TGKLWVLKPEYQQQ 173
             GK+WVLKPEY+QQ
Sbjct: 1217 NGKVWVLKPEYRQQ 1230


>ref|XP_002307656.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222857105|gb|EEE94652.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1206

 Score =  424 bits (1089), Expect = e-116
 Identities = 235/370 (63%), Positives = 266/370 (71%), Gaps = 2/370 (0%)
 Frame = -2

Query: 1282 TIYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQRRFFKARDMKDLFTLQDDAVGGLTE 1103
            T+YRLIT GTIEEKVYHRQIYKHFLTNK+LKNPQQRRFF+ARDMKDLFTL DD  GG TE
Sbjct: 858  TVYRLITGGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFRARDMKDLFTLNDDGEGGSTE 917

Query: 1102 TSNIFSQLSGDINVVQTHKESQDRNTTSSSAAIVSDDTEVGRGARSLVLEPSTTKGKEKD 923
            TSNIFSQLS D+NVV T KE   +   +   A  +DD                   KEK 
Sbjct: 918  TSNIFSQLSEDVNVVGTKKEKLKKRKKNKGIAQHADDAI-----------------KEKA 960

Query: 922  DQKNEELDEETNVLQSLFDAHGIHSAMNHDVIMNAHDEEKMRLDEQASQVAQRAAEALRQ 743
            D  + E+DEETN+L+SLFDA+GIHSA+NHDVIMNAHD EKMRL+EQASQVAQRAAEALRQ
Sbjct: 961  DCSDGEVDEETNILKSLFDANGIHSAVNHDVIMNAHDGEKMRLEEQASQVAQRAAEALRQ 1020

Query: 742  SRMLRSRDSISVPTWTGRSGAAGAPSSVRKKFGSTVNSKLXXXXXXXXXXXXSLTSKPNX 563
            SRMLRSRDSISVPTWTG+SG AGAPSSVR+KFGSTVNS+L            +L      
Sbjct: 1021 SRMLRSRDSISVPTWTGKSGTAGAPSSVRQKFGSTVNSQLIKSSDSSSSNKSNL----KG 1076

Query: 562  XXXXXXXXXXXXXAEFLARIRGTQEIAVGSGFEHQFDLASSS--SNRNQPSTTNKPSRSS 389
                         AE LARIRG QE AVG+G + QF  ASSS  S  ++ S  +KP ++ 
Sbjct: 1077 IAAGTSAGKALSSAELLARIRGNQERAVGAGLDQQFGFASSSGTSAMSENSGASKPPQTL 1136

Query: 388  YSTQPEILIRHICTFIQQNGGSTTSSSVVAHFKERIPSKDLALFKNLLMEIATLEKRPTG 209
             S QPEILIR ICTFIQ+ GGS+ SSS+V HFK+RIPSKDL LFKNLL EIA+L +   G
Sbjct: 1137 SSVQPEILIRQICTFIQRRGGSSDSSSIVQHFKDRIPSKDLPLFKNLLKEIASLREDANG 1196

Query: 208  KLWVLKPEYQ 179
            K WVLKPEYQ
Sbjct: 1197 KQWVLKPEYQ 1206


>ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
          Length = 1227

 Score =  423 bits (1088), Expect = e-116
 Identities = 236/377 (62%), Positives = 277/377 (73%), Gaps = 9/377 (2%)
 Frame = -2

Query: 1282 TIYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQRRFFKARDMKDLFTLQDDAVGGLTE 1103
            T+YRLITRGTIEEKVY RQIYKHFLTNK+LKNPQQ+RFFKARDMKDLF L DD     TE
Sbjct: 860  TVYRLITRGTIEEKVYQRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNDDGEDASTE 919

Query: 1102 TSNIFSQLSGDINVVQTHKESQDRNTT----SSSAAIVSDDTEVGRGARSLVLEPSTTKG 935
            TSNIFSQLS D+NVV  HK+SQD+  +    SS A    D+        +  + PS +  
Sbjct: 920  TSNIFSQLSEDVNVVGKHKDSQDKQKSIIPVSSHACGAVDE------GNNSTIGPSRSGE 973

Query: 934  KEKDDQKNEELDEETNVLQSLFDAHGIHSAMNHDVIMNAHDEEKMRLDEQASQVAQRAAE 755
             EKDDQ ++E+D+ETN+L+SLFDAH +HSA+NHD IMNAH +EKMRL+E+AS+VA+RA+E
Sbjct: 974  NEKDDQ-SDEMDKETNILRSLFDAHRLHSAVNHDAIMNAHGDEKMRLEEEASRVAKRASE 1032

Query: 754  ALRQSRMLRSRDSISVPTWTGRSGAAGAPSSVRKKFGSTVNSKLXXXXXXXXXXXXSLTS 575
            ALRQS+MLRSR+SISVPTWTGRSGAAGAPSSV +KFGSTV+S+L            +  S
Sbjct: 1033 ALRQSQMLRSRESISVPTWTGRSGAAGAPSSVSRKFGSTVSSQLINRSKSSEESSSNGMS 1092

Query: 574  KPNXXXXXXXXXXXXXXAEFLARIRGTQEIAVGSGFEHQFDLASSSSNRNQPSTTNKP-- 401
            KPN              AE LARIRG QE A   G EHQ  L SSS+NR + ST + P  
Sbjct: 1093 KPNGIAAGASAGKALSSAELLARIRGNQERATDDGLEHQ--LGSSSANRAR-STDSGPSS 1149

Query: 400  SRSSY---STQPEILIRHICTFIQQNGGSTTSSSVVAHFKERIPSKDLALFKNLLMEIAT 230
            SRS++   S QPE+LIR ICTFIQQ GGST S+S+V HFK+RIPSKDL LFKNLL EIAT
Sbjct: 1150 SRSTHNLSSVQPEVLIRKICTFIQQKGGSTNSTSIVQHFKDRIPSKDLPLFKNLLKEIAT 1209

Query: 229  LEKRPTGKLWVLKPEYQ 179
            LEK P G  WVLKPEY+
Sbjct: 1210 LEKDPNGSSWVLKPEYR 1226


>ref|XP_003541362.1| PREDICTED: DNA repair and recombination protein RAD26-like [Glycine
            max]
          Length = 1210

 Score =  422 bits (1086), Expect = e-116
 Identities = 225/370 (60%), Positives = 271/370 (73%), Gaps = 2/370 (0%)
 Frame = -2

Query: 1282 TIYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQRRFFKARDMKDLFTLQDDAVGGLTE 1103
            T+YRLITRGTIEEKVYHRQIYKHFLTNK+LKNPQQ+RFFKARDMKDLFTL  D   G TE
Sbjct: 855  TVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTE 914

Query: 1102 TSNIFSQLSGDINVVQTHKESQDRNTTSSSAAIVSDDTEVGRGARSLVLEPSTTKGKEKD 923
            TSNIFSQ+S ++NV+ T+KE++D+   S +A +VS+D  VG   +S              
Sbjct: 915  TSNIFSQISEEVNVIGTYKENKDKYKHSQTAELVSEDVAVGNDDKS-------------- 960

Query: 922  DQKNEELDEETNVLQSLFDAHGIHSAMNHDVIMNAHDEEKMRLDEQASQVAQRAAEALRQ 743
             ++   + EETN+L+SLFDA+GIHSAMNHD+IMNAHDEEK+RL+EQASQVAQRAAEALRQ
Sbjct: 961  -ERGNGVGEETNILKSLFDANGIHSAMNHDLIMNAHDEEKIRLEEQASQVAQRAAEALRQ 1019

Query: 742  SRMLRSRDSISVPTWTGRSGAAGAPSSVRKKFGSTVNSKLXXXXXXXXXXXXSLTSKPN- 566
            SRMLRS DS+SVPTWTGRSG AGAPSSV++KFGSTVN +L              T+K N 
Sbjct: 1020 SRMLRSHDSVSVPTWTGRSGTAGAPSSVKRKFGSTVNPQLVNNSKASDELPNKGTNKING 1079

Query: 565  XXXXXXXXXXXXXXAEFLARIRGTQEIAVGSGFEHQFDLASSSSNR-NQPSTTNKPSRSS 389
                          AE LA+IRG QE A+G+G EHQF ++SSS+N+       +  +  +
Sbjct: 1080 FAAAGASAGKALSSAELLAQIRGNQEKAIGAGLEHQFGVSSSSTNQPRSGDVRSSRATEN 1139

Query: 388  YSTQPEILIRHICTFIQQNGGSTTSSSVVAHFKERIPSKDLALFKNLLMEIATLEKRPTG 209
             S QPE+LIR ICTFIQQ GGS+ S+S+V +FK+RIPSKDLALFKNLL EIATL K   G
Sbjct: 1140 SSVQPEVLIRKICTFIQQRGGSSDSASIVQYFKDRIPSKDLALFKNLLKEIATLHKGSNG 1199

Query: 208  KLWVLKPEYQ 179
              WVLKP+YQ
Sbjct: 1200 SYWVLKPDYQ 1209


>emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]
          Length = 1249

 Score =  419 bits (1078), Expect = e-115
 Identities = 233/377 (61%), Positives = 277/377 (73%), Gaps = 9/377 (2%)
 Frame = -2

Query: 1282 TIYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQRRFFKARDMKDLFTLQDDAVGGLTE 1103
            T+YRLITRGTIEEKVY RQIYKHFLTNK+LKNPQQ+RFFKARDMKDLF L DD     TE
Sbjct: 882  TVYRLITRGTIEEKVYQRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNDDGEDASTE 941

Query: 1102 TSNIFSQLSGDINVVQTHKESQDRNTT----SSSAAIVSDDTEVGRGARSLVLEPSTTKG 935
            TSNIFSQLS D+NVV  HK++QD+  +    SS A    D+     G  S +   S+  G
Sbjct: 942  TSNIFSQLSEDVNVVGKHKDNQDKQKSIIPVSSHACGAVDE-----GNNSTI--GSSRSG 994

Query: 934  KEKDDQKNEELDEETNVLQSLFDAHGIHSAMNHDVIMNAHDEEKMRLDEQASQVAQRAAE 755
            + + D +++E+D+ETN+L+SLFDAH +HSA+NHD IMNAH +EKMRL+E+AS+VA+RA+E
Sbjct: 995  ENEKDDQSDEMDKETNILRSLFDAHRLHSAVNHDAIMNAHGDEKMRLEEEASRVAKRASE 1054

Query: 754  ALRQSRMLRSRDSISVPTWTGRSGAAGAPSSVRKKFGSTVNSKLXXXXXXXXXXXXSLTS 575
            ALRQS+MLRSR+SISVPTWTGRSGAAGAPSSV +KFGSTV+S+L            +  S
Sbjct: 1055 ALRQSQMLRSRESISVPTWTGRSGAAGAPSSVSRKFGSTVSSQLINRSKSSEESSSNGMS 1114

Query: 574  KPNXXXXXXXXXXXXXXAEFLARIRGTQEIAVGSGFEHQFDLASSSSNRNQPSTTNKP-- 401
            KPN              AE LARIRG QE A   G EHQ  L SSS+NR + ST + P  
Sbjct: 1115 KPNGIAAGASAGKALSSAELLARIRGNQERATDDGLEHQ--LGSSSANRAR-STDSGPSS 1171

Query: 400  SRSSY---STQPEILIRHICTFIQQNGGSTTSSSVVAHFKERIPSKDLALFKNLLMEIAT 230
            SRS++   S QPE+LIR ICTFIQQ GGST S+S+V HFK+RIPSKDL LFKNLL EIAT
Sbjct: 1172 SRSTHNLSSVQPEVLIRKICTFIQQKGGSTNSTSIVQHFKDRIPSKDLPLFKNLLKEIAT 1231

Query: 229  LEKRPTGKLWVLKPEYQ 179
            LEK P G  WVLKPEY+
Sbjct: 1232 LEKDPNGSSWVLKPEYR 1248