BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020956
         (1065 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278976.2| PREDICTED: DNA repair protein recA homolog 2...   400   e-109
ref|XP_002533897.1| DNA repair protein reca, putative [Ricinus c...   375   e-101
ref|XP_002323326.1| predicted protein [Populus trichocarpa] gi|2...   370   e-100
ref|NP_187625.2| DNA repair protein recA-like 2 [Arabidopsis tha...   356   6e-96
ref|XP_003554153.1| PREDICTED: DNA repair protein recA homolog 2...   355   1e-95

>ref|XP_002278976.2| PREDICTED: DNA repair protein recA homolog 2, mitochondrial-like
            [Vitis vinifera] gi|296087050|emb|CBI33377.3| unnamed
            protein product [Vitis vinifera]
          Length = 398

 Score =  400 bits (1027), Expect = e-109
 Identities = 209/322 (64%), Positives = 260/322 (80%), Gaps = 3/322 (0%)
 Frame = +3

Query: 108  IYTRSLSSAAEIISEYEGDKLHDNEKALGKDTALRLAISQVAGEFGRDSMLSLRRFFGLR 287
            ++TRSLSS+ E + E E D+  ++ KA  KDTALRLAIS++AG+FGR+SMLSL+RFF  R
Sbjct: 41   MHTRSLSSSVEFL-EIECDEYGNDVKAAEKDTALRLAISRLAGDFGRESMLSLQRFFVSR 99

Query: 288  YAPIVSTGSLKLDVALGLGGLPKGRIVEIYGPESSGKTTLGLHIIKEAQKHGGYCAFIDV 467
            +AP++STGSLKLD+ALG+GGLPKGRIVEIYG E+SGKTTL LHIIKEAQK GGYCA++DV
Sbjct: 100  HAPVISTGSLKLDLALGIGGLPKGRIVEIYGQEASGKTTLALHIIKEAQKLGGYCAYLDV 159

Query: 468  ENALDPSLAESMGVNTDRLLIARPNSAENLLSITNTLAKSGSVEVIVVDSVAALTSQYEL 647
            ENA++PS AESMGVN D LLI+ P+SAENLLS+ NTL KSGS++VIVVDSVAAL  Q+EL
Sbjct: 160  ENAMNPSFAESMGVNVDNLLISPPDSAENLLSMVNTLTKSGSMDVIVVDSVAALVPQHEL 219

Query: 648  DVGIDGPCRGIQSRLMTQAVRKISSSLCHSGTLLVFLNQVRSRPCEGLGYA---TVTCGG 818
            DV I G  + +QS++M QA+RKI  SLC S TL++F+NQVRS      G+     VTCGG
Sbjct: 220  DVVIGGTYQDVQSQIMAQALRKIHYSLCRSETLIIFVNQVRSSLKSSHGFGRLDEVTCGG 279

Query: 819  NALEFYSAVRMKIFRKGLIREEDEIAGLSVCVEVVKNKLAPAMKMADLDIIYGKGIPYEA 998
            NAL FY+AVR+++ R GL+R ED++ GL VCV+VVKNKLA A K ADL I +G+GI +E+
Sbjct: 280  NALRFYAAVRLRVMRTGLLRTEDKVTGLGVCVQVVKNKLAHATKKADLGIQFGRGICFES 339

Query: 999  EVLEMACKQGVIMKRDSGYCIE 1064
            EVLE+AC+ GVI K  S Y IE
Sbjct: 340  EVLELACEHGVIWKEGSKYIIE 361


>ref|XP_002533897.1| DNA repair protein reca, putative [Ricinus communis]
            gi|223526148|gb|EEF28487.1| DNA repair protein reca,
            putative [Ricinus communis]
          Length = 388

 Score =  375 bits (963), Expect = e-101
 Identities = 207/340 (60%), Positives = 254/340 (74%), Gaps = 5/340 (1%)
 Frame = +3

Query: 60   LYSSFFRSLHMINSNRIYTRSLSSAAEIIS--EYEGDKLHDNEKALGKDTALRLAISQVA 233
            L SSFF SL     N   T SL     ++   ++E DKL D+ +A+ K   L LA+ +++
Sbjct: 18   LCSSFFPSLSQNMRNEAIT-SLGRGPRLLCSLDFECDKLIDDSEAMEKHNKLFLALKEIS 76

Query: 234  GEFGRDSMLSLRRFFGLRYAPIVSTGSLKLDVALGLGGLPKGRIVEIYGPESSGKTTLGL 413
            GEF R+SMLSL RFF  R A ++STGSLKLD+ALG+GGLPKGR+VEIYG E+SGKTTL L
Sbjct: 77   GEFCRESMLSLHRFFSSRQASVISTGSLKLDLALGIGGLPKGRMVEIYGQEASGKTTLAL 136

Query: 414  HIIKEAQKHGGYCAFIDVENALDPSLAESMGVNTDRLLIARPNSAENLLSITNTLAKSGS 593
            HIIKEAQK GGYCA++D ENALDPSL ESMGVNT+ LLI+ P+SAENLLS+ +TL KSGS
Sbjct: 137  HIIKEAQKCGGYCAYLDAENALDPSLVESMGVNTENLLISPPDSAENLLSVVDTLTKSGS 196

Query: 594  VEVIVVDSVAALTSQYELDVGIDGPCRGIQSRLMTQAVRKISSSLCHSGTLLVFLNQVRS 773
            V+VIVVDSVAAL  Q ELD  + G     QSR+M+QAVRKI+ SL  S TL++FLNQVR+
Sbjct: 197  VDVIVVDSVAALVPQLELDTML-GSTEDRQSRIMSQAVRKINYSLSQSKTLIIFLNQVRA 255

Query: 774  RPCEGLGYATV---TCGGNALEFYSAVRMKIFRKGLIREEDEIAGLSVCVEVVKNKLAPA 944
                G G   V   TCGGNAL+FYSAVR+++ RK L++ EDEI GL V V+VVKNKLAPA
Sbjct: 256  NVKSGQGLGQVDEATCGGNALKFYSAVRLRMARKALLKTEDEITGLRVSVQVVKNKLAPA 315

Query: 945  MKMADLDIIYGKGIPYEAEVLEMACKQGVIMKRDSGYCIE 1064
            MK A+L I +G+G   E+EVLE+AC+ GVI +  S YCIE
Sbjct: 316  MKKAELGIQFGRGFCSESEVLELACEYGVIRQEGSTYCIE 355


>ref|XP_002323326.1| predicted protein [Populus trichocarpa] gi|222867956|gb|EEF05087.1|
            predicted protein [Populus trichocarpa]
          Length = 323

 Score =  370 bits (951), Expect = e-100
 Identities = 189/289 (65%), Positives = 231/289 (79%)
 Frame = +3

Query: 195  KDTALRLAISQVAGEFGRDSMLSLRRFFGLRYAPIVSTGSLKLDVALGLGGLPKGRIVEI 374
            KD ALRLA++Q+AGEFGR+SMLSL+RFF  R AP++STGSLKLD+ALG+GGLPKGR+VEI
Sbjct: 2    KDNALRLALTQLAGEFGRESMLSLQRFFNSRRAPVISTGSLKLDLALGIGGLPKGRMVEI 61

Query: 375  YGPESSGKTTLGLHIIKEAQKHGGYCAFIDVENALDPSLAESMGVNTDRLLIARPNSAEN 554
            YG E+SGKTTL LHIIKEAQK GGYCA++DVENA+DP L ESMG+NT+ LLI+ P+ AEN
Sbjct: 62   YGKEASGKTTLALHIIKEAQKLGGYCAYLDVENAMDPLLPESMGINTENLLISHPDCAEN 121

Query: 555  LLSITNTLAKSGSVEVIVVDSVAALTSQYELDVGIDGPCRGIQSRLMTQAVRKISSSLCH 734
            LLS+ +TL KSGSV+VIVVDSVAAL  Q E+D  + G    IQSRLMTQA+RKI+ SLC 
Sbjct: 122  LLSVVDTLTKSGSVDVIVVDSVAALVPQREIDTAVGGTFEDIQSRLMTQALRKINYSLCQ 181

Query: 735  SGTLLVFLNQVRSRPCEGLGYATVTCGGNALEFYSAVRMKIFRKGLIREEDEIAGLSVCV 914
            S TL++FLNQVR     G     VTCGGNAL+FYSAVR+++ R  L++ ED I GL VC 
Sbjct: 182  SQTLIIFLNQVRKSLKSGRA-EEVTCGGNALKFYSAVRLRMIRTRLLKTEDRITGLGVCA 240

Query: 915  EVVKNKLAPAMKMADLDIIYGKGIPYEAEVLEMACKQGVIMKRDSGYCI 1061
            +VVKNKLAPAM  A+L+I +G+G   E+EVLE+AC+  +I K  S Y I
Sbjct: 241  QVVKNKLAPAMTKAELEIQFGRGFCSESEVLELACEHSLIKKEGSSYVI 289


>ref|NP_187625.2| DNA repair protein recA-like 2 [Arabidopsis thaliana]
            gi|75158993|sp|Q8RY99.1|RECAM_ARATH RecName: Full=DNA
            repair protein recA homolog 2, mitochondrial; AltName:
            Full=Recombinase A homolog 2; Flags: Precursor
            gi|18996122|gb|AAL79768.1| RecA protein [Arabidopsis
            thaliana] gi|22531124|gb|AAM97066.1| putative RecA
            protein [Arabidopsis thaliana] gi|23198012|gb|AAN15533.1|
            putative RecA protein [Arabidopsis thaliana]
            gi|332641343|gb|AEE74864.1| DNA repair protein recA-like
            2 [Arabidopsis thaliana]
          Length = 389

 Score =  356 bits (913), Expect = 6e-96
 Identities = 192/341 (56%), Positives = 249/341 (73%), Gaps = 10/341 (2%)
 Frame = +3

Query: 72   FFRSLHMINSNRIY-------TRSLSSAAEIISEYEGDKLHDNEKALGKDTALRLAISQV 230
            FF  L  +N  R          R LSS  E  S+ E D++ D+ K   KDTAL LA+SQ+
Sbjct: 15   FFSYLSQLNGRRSVLACSGYENRYLSSLVEA-SDCELDEVPDDRKVAEKDTALHLALSQL 73

Query: 231  AGEFGRDSMLSLRRFFGLRYAPIVSTGSLKLDVALGLGGLPKGRIVEIYGPESSGKTTLG 410
            +G+F +DS LSL+RF+  R   ++STGSL LD+ALG+GGLPKGR+VE+YG E+SGKTTL 
Sbjct: 74   SGDFDKDSKLSLQRFYRKRRVSVISTGSLNLDLALGVGGLPKGRMVEVYGKEASGKTTLA 133

Query: 411  LHIIKEAQKHGGYCAFIDVENALDPSLAESMGVNTDRLLIARPNSAENLLSITNTLAKSG 590
            LHIIKEAQK GGYCA++D ENA+DPSLAES+GVNT+ LLI+RP+SAE +L+I + L KSG
Sbjct: 134  LHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLISRPSSAEKMLNIVDVLTKSG 193

Query: 591  SVEVIVVDSVAALTSQYELDVGIDGPCRGIQSRLMTQAVRKISSSLCHSGTLLVFLNQVR 770
            SV+VIVVDSVAAL  Q ELD  +    R  QSR+MTQA+RKI  S+ +S TL+VFLNQVR
Sbjct: 194  SVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIMTQALRKIHYSVGYSQTLIVFLNQVR 253

Query: 771  SRPCEGLGY---ATVTCGGNALEFYSAVRMKIFRKGLIREEDEIAGLSVCVEVVKNKLAP 941
            S     + +     VTCGGNAL F++A+R+K+ R GLI+  ++I+GL+VCV+VVKNKLAP
Sbjct: 254  SHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRTGLIKTANKISGLNVCVQVVKNKLAP 313

Query: 942  AMKMADLDIIYGKGIPYEAEVLEMACKQGVIMKRDSGYCIE 1064
              K ++L I +G G   E EVLE+AC+ GVI++  + Y IE
Sbjct: 314  GKKKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIE 354


>ref|XP_003554153.1| PREDICTED: DNA repair protein recA homolog 2, mitochondrial-like
            [Glycine max]
          Length = 386

 Score =  355 bits (910), Expect = 1e-95
 Identities = 187/319 (58%), Positives = 247/319 (77%), Gaps = 4/319 (1%)
 Frame = +3

Query: 120  SLSSAAEIISEYEGDKLHDNEKALGKDTALRLAISQVAGEFGRDSMLSLRRFFGLRYAPI 299
            SLSSAAE  S++E D +HD+ KA  KD AL LA+SQ+A EF ++SMLSL++ FG+R A +
Sbjct: 36   SLSSAAEA-SDFECDAIHDDVKAAEKDNALCLAVSQLASEFSKESMLSLQKIFGVRRAHV 94

Query: 300  VSTGSLKLDVALGLGGLPKGRIVEIYGPESSGKTTLGLHIIKEAQKHGGYCAFIDVENAL 479
            +STGSLKLD+ALG+GGLPKGRIVEIYG E++GKTTL + IIKEAQK GGYCA++DVENAL
Sbjct: 95   ISTGSLKLDLALGIGGLPKGRIVEIYGREAAGKTTLAIQIIKEAQKLGGYCAYLDVENAL 154

Query: 480  DPSLAESMGVNTDRLLIARPNSAENLLSITNTLAKSGSVEVIVVDSVAALTSQYELDVGI 659
            D SL ESMG++T+ LLI+ P+ AENLLS+ +TL KSG+V+VIV+DSVAAL  + ELD   
Sbjct: 155  DFSLMESMGIDTENLLISHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALVPKCELDQLG 214

Query: 660  DGPCRGIQSRLMTQAVRKISSSLCHSGTLLVFLNQVRSRPCEGLGYAT---VTCGGNALE 830
                R +QSR+MTQA+RKI  SL HS TL+VF+NQ+R  P     Y +   VTCGGNAL 
Sbjct: 215  VTTNRDLQSRMMTQALRKIHYSLSHSQTLIVFINQIRLSPKSAKEYGSVEEVTCGGNALR 274

Query: 831  FYSAVRMKIFRKGLIREEDEIAGLSVCVEVVKNKLAP-AMKMADLDIIYGKGIPYEAEVL 1007
            FY+AVR+++ R  LI+ ED++ G+ +C +VVKNKLAP A K A+L I +G+G  +E++VL
Sbjct: 275  FYAAVRLRLSRVRLIKTEDKVEGVMICAQVVKNKLAPAATKRAELGIKFGRGFCHESDVL 334

Query: 1008 EMACKQGVIMKRDSGYCIE 1064
            ++AC+ G+ +K +  Y IE
Sbjct: 335  DLACEHGIFVKHEGSYFIE 353