BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020951
         (609 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    79   8e-13
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    72   6e-11
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    72   8e-11
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]              71   2e-10
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]              70   4e-10

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score = 78.6 bits (192), Expect = 8e-13
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 9/209 (4%)
 Frame = -1

Query: 609  LKSSSNLFRFGLNINPDCIFCNNHPDTAQHLFHECPFTQTVWQTSPLPQIGYVPFTETTQ 430
            L  +SNL    L     C+ C +H +T  HL  +CPF +  W  SPLP     P  E  +
Sbjct: 1075 LSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPA---PPGGEWAE 1131

Query: 429  IWITKIQQLLRNTHGTIPFAIELFAI---LCWSIWNSRNERLFEQKRVT-PQGTLRAS-- 268
                 +  +L + H + P   +  A+   + W +W +RN+ +F+ +  T PQ  L+A+  
Sbjct: 1132 SLFRNMHHVL-SVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATED 1190

Query: 267  LAFWRSTKEAQNLLLKPKRTKQLVHPC--WKPNAPPHITLNTDGACHGNPGPMGLGCVLR 94
            +  W + KE Q     P+ T      C  W+P +   +  NTDGA   + G  G+G VLR
Sbjct: 1191 MDAWNNRKEPQ-----PQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLR 1245

Query: 93   TSDGTFVAAAVDFVPISTSFI-AEALAMR 10
               G  +   +  +P   S +  E  A+R
Sbjct: 1246 NHTGRLLWLGLRALPSQQSVLETEVEALR 1274


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl
            transferase, Ribonuclease H fold [Medicago truncatula]
          Length = 729

 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 3/198 (1%)
 Frame = -1

Query: 585  RFGLNINPDCIFCNNHPDTAQHLFHECPFTQTVWQTSPLPQIGYVP--FTETTQIWITKI 412
            ++G+ I+P C  C    +T  H+  +C  +  VW    L    Y+   F+   + W+   
Sbjct: 496  KWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLR--LIPHNYITNFFSFDCREWV--F 551

Query: 411  QQLLRNTHGTIPFAIEL-FAILCWSIWNSRNERLFEQKRVTPQGTLRASLAFWRSTKEAQ 235
              L +   G  P   +  F   CW +WN RN+ +FE     P         F R  ++  
Sbjct: 552  NNLNKKGIGDNPATWQTTFMTTCWYLWNWRNKSIFEIGFQRPSNPTLVIQKFTREIEDNT 611

Query: 234  NLLLKPKRTKQLVHPCWKPNAPPHITLNTDGACHGNPGPMGLGCVLRTSDGTFVAAAVDF 55
             L+ K    K+ ++  W       + LN DGA  G+    G G +LR SDG ++      
Sbjct: 612  KLVHKSSHQKETIYIGWMRPPFGWVKLNCDGAWKGSGTLAGCGGLLRDSDGRWIKGYFKK 671

Query: 54   VPISTSFIAEALAMRLGL 1
            + +  +F AE   M LGL
Sbjct: 672  IGMCDAFHAEMWGMYLGL 689


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 60/212 (28%), Positives = 91/212 (42%), Gaps = 9/212 (4%)
 Frame = -1

Query: 609  LKSSSNLFRFGLNINPDCIFCNNHPDTAQHLFHECPFTQTVWQTSPLPQIGYVPFTETTQ 430
            L ++SN F   L  +P C+ C    +   H+   CP  + +W+     ++G +      +
Sbjct: 1068 LMTNSNRFLRRLTDDPRCLVCGEVEENTDHILRRCPVARILWR-----KLGMLGEHNREE 1122

Query: 429  I----WITKIQQLLRNTHGTIPFAIELFAILCWSIWNSRNERLFEQKRVTPQGTLRASLA 262
            I    WITK   L  +T     + + +FA+ CW +W  RN+R F +    P   +    A
Sbjct: 1123 INLGSWITK--NLSADTMMGSEW-LRVFAVSCWWLWRWRNDRCFNRNPSIPIDQVSFIFA 1179

Query: 261  FWRSTKEAQ-----NLLLKPKRTKQLVHPCWKPNAPPHITLNTDGACHGNPGPMGLGCVL 97
              +  KEA      N      R K+++   W+      + LNTDGA  GNPGP G G ++
Sbjct: 1180 RVKEIKEAMDRNDTNKSQHSGRRKEILVR-WQCPKEGWVKLNTDGASKGNPGPAGGGGLI 1238

Query: 96   RTSDGTFVAAAVDFVPISTSFIAEALAMRLGL 1
            R   G             T   AE LA+  GL
Sbjct: 1239 RGPRGEIHEVFAINCGSCTCTKAELLAVLRGL 1270


>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 53/198 (26%), Positives = 81/198 (40%), Gaps = 3/198 (1%)
 Frame = -1

Query: 585  RFGLNINPDCIFCNNHPDTAQHLFHECPFTQTVWQTSPLPQIGYVPFTETTQIWI-TKIQ 409
            R GL     C  C    +T  HLF  C   +  W ++  P             W+     
Sbjct: 1069 RRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACS 1128

Query: 408  QLLRNTHGTIPFAIELFAILCWSIWNSRNERLFEQKRVTPQGTLRASLAFWRSTKEAQNL 229
               ++ +GT    I  F  + W++W +RN  +F+     P   L  S   +  + EA+ L
Sbjct: 1129 SQQKDGYGTNWSLI--FPYILWNLWKARNRLVFDNNITAPSDILNRS---FMESSEARCL 1183

Query: 228  LLKPK--RTKQLVHPCWKPNAPPHITLNTDGACHGNPGPMGLGCVLRTSDGTFVAAAVDF 55
            L K    +T       W P A     LN+DGAC  +      G +LR  +G +VA  +  
Sbjct: 1184 LAKRTGLQTAFQTWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYICN 1243

Query: 54   VPISTSFIAEALAMRLGL 1
            +  + SF+AE   +R GL
Sbjct: 1244 IGTANSFLAELWGLREGL 1261


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 3/198 (1%)
 Frame = -1

Query: 585  RFGLNINPDCIFCNNHPDTAQHLFHECPFTQTVWQTSPLPQIGYVPFTETTQIWI-TKIQ 409
            R GL     C  C    +T  HLF  C   +  W ++  P             W+     
Sbjct: 1601 RRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACS 1660

Query: 408  QLLRNTHGTIPFAIELFAILCWSIWNSRNERLFEQKRVTPQGTLRASLAFWRSTKEAQNL 229
               ++ +GT    I  F  + W++W +RN  +F+     P   L  S   +  + EA+ L
Sbjct: 1661 SQQKDGYGTNWSLI--FPYILWNLWKARNRLVFDNNITAPSDILNRS---FMESSEARCL 1715

Query: 228  LLKPK--RTKQLVHPCWKPNAPPHITLNTDGACHGNPGPMGLGCVLRTSDGTFVAAAVDF 55
            L K    +T       W P A     LN+DGAC  +      G +LR  +G +VA     
Sbjct: 1716 LAKRTGLQTAFQTWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYTCN 1775

Query: 54   VPISTSFIAEALAMRLGL 1
            +  + SF+AE   +R GL
Sbjct: 1776 IGTANSFLAELWGLREGL 1793