BLASTX nr result
ID: Coptis24_contig00020948
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00020948 (2107 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI25851.3| unnamed protein product [Vitis vinifera] 292 e-130 ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containi... 292 e-130 ref|XP_002531466.1| pentatricopeptide repeat-containing protein,... 276 e-122 ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containi... 263 e-117 ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|2... 273 e-115 >emb|CBI25851.3| unnamed protein product [Vitis vinifera] Length = 528 Score = 292 bits (748), Expect(2) = e-130 Identities = 150/284 (52%), Positives = 192/284 (67%), Gaps = 6/284 (2%) Frame = +2 Query: 17 QGMSINSICRHFPLNYSIKRXXXXXXID--ETNYLRLLQTNYNLEKTLTENRGKLNSSIV 190 + M+ +S+ R P + K + E Y L + N+EKTL R KL+SS V Sbjct: 5 KSMAFSSVSRLLPYSIRHKNPNFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCV 64 Query: 191 EDVLRKCSSDKPILGLRFFIWAGLQSDYRHSKFIYNKACNFFEIER----ISDVLEIYRK 358 +VL +CS + LGLRFFIWAG+QS YRHS ++Y+KAC F I + I DV+E YR Sbjct: 65 NEVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRV 124 Query: 359 EGCLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGDMDV 538 EG +V VK F V+L+L REAKLA+EAL + +KM EF R DT ++N VIR+FCEKGDMD+ Sbjct: 125 EGTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDL 184 Query: 539 VLVLIKEMALIGIYPDMITYIVSIKGFCEVGRLEDASGLVKVMRNQGCVPNVVAYSALLD 718 L+KEM LI +YP+MITY+ IKGFC VGRLEDA L KVM+ GC PNVV Y+ +LD Sbjct: 185 AAGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILD 244 Query: 719 GFCKIGDFDKALELLGEMEKEENGGMPNVVTYTSLIQNFCDNDR 850 G C+ G ++ALELLGEMEKE PNVVTYTS+IQ+ C+ + Sbjct: 245 GVCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGK 288 Score = 201 bits (510), Expect(2) = e-130 Identities = 100/189 (52%), Positives = 136/189 (71%) Frame = +3 Query: 858 VEALAVLDRMGSRGCFPNRVAICTLIKRLCSDDNIEEAHKLIVKVVANGSVSRNECYSCL 1037 +EAL +LDRM + GC PNRV + L+K C++ +EEA KLI KVVA G+VS ECYS L Sbjct: 290 MEALEILDRMRACGCAPNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSL 349 Query: 1038 VVSLLRNKNMNEANELFRWMLKNQIKPDGLASSILIKQLCLDGQILEGFEYYDEMEKIDC 1217 +VSL+ NKN+ EA +LFR ML N +KPDGLA LIK LCL+G++L+GF +DE E ++ Sbjct: 350 IVSLVGNKNLQEAEKLFRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEG 409 Query: 1218 LPSIDSNIYSILLVGLCQHGYSVEAVRLINAMVKRKIKVKASYTDSLIKSLQNSGEKELA 1397 L +DS+IYSILLVGL Q +SVEAV+L MV R I++K Y DS+++ L+ SG+KE+ Sbjct: 410 LSYLDSDIYSILLVGLSQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEIC 469 Query: 1398 LHLKSAGIM 1424 H + ++ Sbjct: 470 THFCTLALL 478 Score = 67.4 bits (163), Expect = 1e-08 Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 4/182 (2%) Frame = +2 Query: 305 CNFFEIERISDVLEIYRKEGCLVCVKMFKVILN-LCREAKL--ANEALGVFRKMREFG-C 472 CN +E + ++ + GC V ++ VIL+ +CR L A E LG K E G C Sbjct: 212 CNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEK--ESGDC 269 Query: 473 RPDTTSFNIVIRMFCEKGDMDVVLVLIKEMALIGIYPDMITYIVSIKGFCEVGRLEDASG 652 P+ ++ +I+ CEKG + L ++ M G P+ +T + +KGFC GR+E+A Sbjct: 270 SPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAPNRVTVSILMKGFCAEGRVEEAFK 329 Query: 653 LVKVMRNQGCVPNVVAYSALLDGFCKIGDFDKALELLGEMEKEENGGMPNVVTYTSLIQN 832 L+ + G V YS+L+ + +A +L M N P+ + +LI+ Sbjct: 330 LIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKLFRRM--LANAVKPDGLACGTLIKA 387 Query: 833 FC 838 C Sbjct: 388 LC 389 >ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Vitis vinifera] Length = 638 Score = 292 bits (747), Expect(2) = e-130 Identities = 150/282 (53%), Positives = 191/282 (67%), Gaps = 6/282 (2%) Frame = +2 Query: 23 MSINSICRHFPLNYSIKRXXXXXXID--ETNYLRLLQTNYNLEKTLTENRGKLNSSIVED 196 M+ +S+ R P + K + E Y L + N+EKTL R KL+SS V + Sbjct: 1 MAFSSVSRLLPYSIRHKNPNFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVNE 60 Query: 197 VLRKCSSDKPILGLRFFIWAGLQSDYRHSKFIYNKACNFFEIER----ISDVLEIYRKEG 364 VL +CS + LGLRFFIWAG+QS YRHS ++Y+KAC F I + I DV+E YR EG Sbjct: 61 VLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVEG 120 Query: 365 CLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGDMDVVL 544 +V VK F V+L+L REAKLA+EAL + +KM EF R DT ++N VIR+FCEKGDMD+ Sbjct: 121 TVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAA 180 Query: 545 VLIKEMALIGIYPDMITYIVSIKGFCEVGRLEDASGLVKVMRNQGCVPNVVAYSALLDGF 724 L+KEM LI +YP+MITY+ IKGFC VGRLEDA L KVM+ GC PNVV Y+ +LDG Sbjct: 181 GLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGV 240 Query: 725 CKIGDFDKALELLGEMEKEENGGMPNVVTYTSLIQNFCDNDR 850 C+ G ++ALELLGEMEKE PNVVTYTS+IQ+ C+ + Sbjct: 241 CRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGK 282 Score = 201 bits (510), Expect(2) = e-130 Identities = 100/183 (54%), Positives = 135/183 (73%) Frame = +3 Query: 858 VEALAVLDRMGSRGCFPNRVAICTLIKRLCSDDNIEEAHKLIVKVVANGSVSRNECYSCL 1037 +EAL +LDRM + GC PNRV + L+K C++ +EEA KLI KVVA G+VS ECYS L Sbjct: 284 MEALEILDRMRACGCAPNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSL 343 Query: 1038 VVSLLRNKNMNEANELFRWMLKNQIKPDGLASSILIKQLCLDGQILEGFEYYDEMEKIDC 1217 +VSL+ NKN+ EA +LFR ML N +KPDGLA LIK LCL+G++L+GF +DE E ++ Sbjct: 344 IVSLVGNKNLQEAEKLFRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEG 403 Query: 1218 LPSIDSNIYSILLVGLCQHGYSVEAVRLINAMVKRKIKVKASYTDSLIKSLQNSGEKELA 1397 L +DS+IYSILLVGL Q +SVEAV+L MV R I++K Y DS+++ L+ SG+KE+ Sbjct: 404 LSYLDSDIYSILLVGLSQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEIV 463 Query: 1398 LHL 1406 ++L Sbjct: 464 MYL 466 Score = 67.4 bits (163), Expect = 1e-08 Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 4/182 (2%) Frame = +2 Query: 305 CNFFEIERISDVLEIYRKEGCLVCVKMFKVILN-LCREAKL--ANEALGVFRKMREFG-C 472 CN +E + ++ + GC V ++ VIL+ +CR L A E LG K E G C Sbjct: 206 CNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEK--ESGDC 263 Query: 473 RPDTTSFNIVIRMFCEKGDMDVVLVLIKEMALIGIYPDMITYIVSIKGFCEVGRLEDASG 652 P+ ++ +I+ CEKG + L ++ M G P+ +T + +KGFC GR+E+A Sbjct: 264 SPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAPNRVTVSILMKGFCAEGRVEEAFK 323 Query: 653 LVKVMRNQGCVPNVVAYSALLDGFCKIGDFDKALELLGEMEKEENGGMPNVVTYTSLIQN 832 L+ + G V YS+L+ + +A +L M N P+ + +LI+ Sbjct: 324 LIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKLFRRM--LANAVKPDGLACGTLIKA 381 Query: 833 FC 838 C Sbjct: 382 LC 383 >ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528920|gb|EEF30916.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 518 Score = 276 bits (705), Expect(2) = e-122 Identities = 134/251 (53%), Positives = 176/251 (70%), Gaps = 4/251 (1%) Frame = +2 Query: 110 YLRLLQTNYNLEKTLTENRGKLNSSIVEDVLRKCSSDKPILGLRFFIWAGLQSDYRHSKF 289 Y L N+EK+L + KL++ V +VL KCS + +GLRFF+WAG QS+YRHS F Sbjct: 35 YTHLQNNPNNVEKSLNSIKPKLDTRCVTEVLHKCSLNNSQIGLRFFVWAGYQSNYRHSSF 94 Query: 290 IYNKACNFFEIER----ISDVLEIYRKEGCLVCVKMFKVILNLCREAKLANEALGVFRKM 457 +Y+KAC F I++ + D+ E YR E C+V +K FKV+LNLC+E LANEA V RKM Sbjct: 95 LYSKACKLFNIKQNPQAVLDLFEFYRAEKCVVNLKTFKVVLNLCKEGTLANEAFLVLRKM 154 Query: 458 REFGCRPDTTSFNIVIRMFCEKGDMDVVLVLIKEMALIGIYPDMITYIVSIKGFCEVGRL 637 +EF + DT ++ IVIR+FC+KGDMD+ L+ EM+ +YPDM+TY+ IKGFC++GRL Sbjct: 155 QEFDIQADTKAYTIVIRLFCDKGDMDMAQKLMGEMSFNDLYPDMVTYVSIIKGFCDIGRL 214 Query: 638 EDASGLVKVMRNQGCVPNVVAYSALLDGFCKIGDFDKALELLGEMEKEENGGMPNVVTYT 817 E+A LVK MR GCVPNVV YS L+DG C+ G ++ALELLG MEKE PNV+TYT Sbjct: 215 EEACRLVKEMRAHGCVPNVVVYSTLVDGICRFGSVERALELLGGMEKEGGDCNPNVLTYT 274 Query: 818 SLIQNFCDNDR 850 S+IQ C+ R Sbjct: 275 SVIQGLCEKGR 285 Score = 191 bits (485), Expect(2) = e-122 Identities = 93/189 (49%), Positives = 137/189 (72%) Frame = +3 Query: 852 RPVEALAVLDRMGSRGCFPNRVAICTLIKRLCSDDNIEEAHKLIVKVVANGSVSRNECYS 1031 R ++A AVLDRM + GC PNRV + TL+KRLC D ++EEA+KLI +VVA GSVS +CYS Sbjct: 285 RTMDAFAVLDRMEACGCAPNRVTVSTLLKRLCMDGHLEEAYKLIDRVVAGGSVSSCDCYS 344 Query: 1032 CLVVSLLRNKNMNEANELFRWMLKNQIKPDGLASSILIKQLCLDGQILEGFEYYDEMEKI 1211 +VV L+R K + EA +LFR + + +KPDGLA S++IK+LC ++L+G+ +DE+EKI Sbjct: 345 PIVVCLIRIKKVEEAEKLFRRAVVSGVKPDGLACSLMIKELCFVNRVLDGYCLHDEIEKI 404 Query: 1212 DCLPSIDSNIYSILLVGLCQHGYSVEAVRLINAMVKRKIKVKASYTDSLIKSLQNSGEKE 1391 L +IDS+ YS+LLVGLCQ GYS+EA +L ++++++I +K Y D +++ ++ G + Sbjct: 405 GSLSTIDSDTYSVLLVGLCQQGYSLEAAKLARSLIEKRIHLKHPYVDKVVEYMKKFGVTD 464 Query: 1392 LALHLKSAG 1418 L L S G Sbjct: 465 LVTELASIG 473 >ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Cucumis sativus] gi|449505643|ref|XP_004162530.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Cucumis sativus] Length = 475 Score = 263 bits (673), Expect(2) = e-117 Identities = 131/248 (52%), Positives = 175/248 (70%), Gaps = 4/248 (1%) Frame = +2 Query: 110 YLRLLQTNYNLEKTLTENRGKLNSSIVEDVLRKCSSDKPILGLRFFIWAGLQSDYRHSKF 289 Y L ++N NL+KTL + KL+S V +VL KCS + +GLRFFIWAG Q +YRHS F Sbjct: 36 YDHLEKSNGNLDKTLATLKTKLDSRCVNEVLYKCSFELSQMGLRFFIWAGRQPNYRHSSF 95 Query: 290 IYNKACNFFEIE----RISDVLEIYRKEGCLVCVKMFKVILNLCREAKLANEALGVFRKM 457 +Y++AC I + +V+E YR+EGCLV ++MFK+ILNLC+EAKLA EAL + RKM Sbjct: 96 MYSRACELIGINVSPCLLFNVIEDYRREGCLVDIRMFKIILNLCKEAKLAKEALSILRKM 155 Query: 458 REFGCRPDTTSFNIVIRMFCEKGDMDVVLVLIKEMALIGIYPDMITYIVSIKGFCEVGRL 637 EF R DTT +N+VIR+F EKG+MD + L+KEM + I+P+MITYI +KGFC+VGR Sbjct: 156 SEFHLRADTTMYNLVIRLFTEKGEMDKAMELMKEMDSVDIHPNMITYISMLKGFCDVGRW 215 Query: 638 EDASGLVKVMRNQGCVPNVVAYSALLDGFCKIGDFDKALELLGEMEKEENGGMPNVVTYT 817 EDA GL K M+ GC PN V YS L++G ++ D+ +E+L EMEK+ PN VTYT Sbjct: 216 EDAYGLFKDMKENGCAPNTVVYSVLVNGAIRLRIMDRLMEMLKEMEKQGGTCSPNTVTYT 275 Query: 818 SLIQNFCD 841 S+IQ+ C+ Sbjct: 276 SIIQSLCE 283 Score = 187 bits (476), Expect(2) = e-117 Identities = 92/184 (50%), Positives = 135/184 (73%) Frame = +3 Query: 855 PVEALAVLDRMGSRGCFPNRVAICTLIKRLCSDDNIEEAHKLIVKVVANGSVSRNECYSC 1034 P+EAL VLDRM G PNRVA+ L+K C D ++EEA+KLI +VVA G VS +CYS Sbjct: 287 PLEALKVLDRMEEYGYAPNRVAVSFLVKEFCKDGHVEEAYKLIDRVVARGGVSYGDCYSS 346 Query: 1035 LVVSLLRNKNMNEANELFRWMLKNQIKPDGLASSILIKQLCLDGQILEGFEYYDEMEKID 1214 LVV+L++ K + EA +LFR ML N +KPDG+A S++I++LCL+ ++L+GF E+++ Sbjct: 347 LVVTLVKMKKIAEAEKLFRNMLANGVKPDGVACSLMIRELCLEERVLDGFNLCYEVDRNG 406 Query: 1215 CLPSIDSNIYSILLVGLCQHGYSVEAVRLINAMVKRKIKVKASYTDSLIKSLQNSGEKEL 1394 L SID++IYS+LLVGLC+H +SV+A +L M+K+ I++K Y +S+IK L+ ++EL Sbjct: 407 YLCSIDADIYSLLLVGLCEHDHSVDAAKLARLMLKKGIRLKPHYAESIIKHLKKFEDREL 466 Query: 1395 ALHL 1406 +HL Sbjct: 467 VMHL 470 Score = 61.2 bits (147), Expect = 1e-06 Identities = 43/185 (23%), Positives = 88/185 (47%), Gaps = 5/185 (2%) Frame = +2 Query: 311 FFEIERISDVLEIYR---KEGCLVCVKMFKVILNLCREAKLANEALGVFRKMREFG--CR 475 F ++ R D +++ + GC ++ V++N ++ + + + ++M + G C Sbjct: 209 FCDVGRWEDAYGLFKDMKENGCAPNTVVYSVLVNGAIRLRIMDRLMEMLKEMEKQGGTCS 268 Query: 476 PDTTSFNIVIRMFCEKGDMDVVLVLIKEMALIGIYPDMITYIVSIKGFCEVGRLEDASGL 655 P+T ++ +I+ CE+G L ++ M G P+ + +K FC+ G +E+A L Sbjct: 269 PNTVTYTSIIQSLCEEGHPLEALKVLDRMEEYGYAPNRVAVSFLVKEFCKDGHVEEAYKL 328 Query: 656 VKVMRNQGCVPNVVAYSALLDGFCKIGDFDKALELLGEMEKEENGGMPNVVTYTSLIQNF 835 + + +G V YS+L+ K+ +A +L M NG P+ V + +I+ Sbjct: 329 IDRVVARGGVSYGDCYSSLVVTLVKMKKIAEAEKLFRNM--LANGVKPDGVACSLMIREL 386 Query: 836 CDNDR 850 C +R Sbjct: 387 CLEER 391 >ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|222833786|gb|EEE72263.1| predicted protein [Populus trichocarpa] Length = 476 Score = 273 bits (699), Expect(2) = e-115 Identities = 145/287 (50%), Positives = 189/287 (65%), Gaps = 11/287 (3%) Frame = +2 Query: 23 MSINSICRHFPLNYSIKRXXXXXXIDETNYL------RLLQTNYNLEKTLTENRG-KLNS 181 MS+ S+ RHF + K T L L + N+EKTL KL++ Sbjct: 1 MSLFSLTRHFTFSIKPKTPKISTLHFATTSLGEKLDAHLQNSPNNVEKTLNSLAPIKLDT 60 Query: 182 SIVEDVLRKCSSDKPILGLRFFIWAGLQSDYRHSKFIYNKACNFFEIER----ISDVLEI 349 V D++ + S + LGLRFFIWAG Q +YRH+ +IYNKAC+ F+I++ I D++E Sbjct: 61 KYVNDIIHRWSLNNLQLGLRFFIWAGDQPNYRHNLYIYNKACSLFKIKQNPQVILDLIET 120 Query: 350 YRKEGCLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGD 529 Y+ E C+VCV FKV+L LC+ LA+EAL V +KM EF RPDTT++N+VIR CEKGD Sbjct: 121 YKLEKCVVCVDTFKVVLRLCKAGGLADEALMVLKKMPEFNIRPDTTAYNVVIRSLCEKGD 180 Query: 530 MDVVLVLIKEMALIGIYPDMITYIVSIKGFCEVGRLEDASGLVKVMRNQGCVPNVVAYSA 709 +D+ L+ EM LI +YPDMITY+ IKGFC+VGRLE+A L VM GC PNVVAYSA Sbjct: 181 VDMAKKLMGEMGLIDLYPDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAYSA 240 Query: 710 LLDGFCKIGDFDKALELLGEMEKEENGGMPNVVTYTSLIQNFCDNDR 850 LLDG C+ G ++A ELL EMEK+ G PNV+TYTS+IQ+FC+ R Sbjct: 241 LLDGICRFGIVERAFELLAEMEKQGEGCCPNVITYTSVIQSFCEQGR 287 Score = 169 bits (429), Expect(2) = e-115 Identities = 82/187 (43%), Positives = 127/187 (67%) Frame = +3 Query: 852 RPVEALAVLDRMGSRGCFPNRVAICTLIKRLCSDDNIEEAHKLIVKVVANGSVSRNECYS 1031 R +AL+VL+ M RGC PNRV I +C++ +++ + I ++VA GSVS +CYS Sbjct: 287 RTKDALSVLELMEVRGCAPNRVTASAWINGICTNGQLQDVYNFIERIVAGGSVSIGDCYS 346 Query: 1032 CLVVSLLRNKNMNEANELFRWMLKNQIKPDGLASSILIKQLCLDGQILEGFEYYDEMEKI 1211 LVV L++ K + EA + FR L + +KPD LA S++I+++C + ++L+GF Y+E+EK Sbjct: 347 SLVVCLIKIKKVEEAEKTFRRALSSGMKPDSLACSMMIREICSEKRVLDGFCLYEEVEKT 406 Query: 1212 DCLPSIDSNIYSILLVGLCQHGYSVEAVRLINAMVKRKIKVKASYTDSLIKSLQNSGEKE 1391 CL SID +IYSILL GLCQ G+S EA RL +M++++I ++A + + +++ L+N G KE Sbjct: 407 GCLSSIDIDIYSILLAGLCQQGHSAEAARLARSMLEKRIPLRAPHVEKIVEHLKNFGGKE 466 Query: 1392 LALHLKS 1412 L L S Sbjct: 467 LVAELVS 473