BLASTX nr result
ID: Coptis24_contig00020940
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00020940 (411 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi... 221 6e-56 emb|CBI36131.3| unnamed protein product [Vitis vinifera] 221 6e-56 ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi... 202 2e-50 ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ... 201 5e-50 ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat... 195 3e-48 >ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Vitis vinifera] Length = 648 Score = 221 bits (562), Expect = 6e-56 Identities = 110/137 (80%), Positives = 118/137 (86%) Frame = +1 Query: 1 LALFEDMVKEGYPPDHITFVGVLSACSHGGLMEKGSKFFESMTSDYLIRPTVQHYTCMVD 180 L LFE+M + PDHITFVGVLSACSHGGL+E+G FFE+M DY I PTVQHYTCMVD Sbjct: 363 LDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVD 421 Query: 181 LLGHSGRLDEAYDLIMNMPVRPDSGVWGALLNSCKLHGNVELGEEALLRLIDLEPRDAGN 360 LLGHSGRLDEAY+LIM M V PDSGVWGALLNSCK+H NVELGE AL RLI+LEP DAGN Sbjct: 422 LLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGN 481 Query: 361 YVILSNIYAQAGKWEGV 411 YVILSNIYAQAGKWEGV Sbjct: 482 YVILSNIYAQAGKWEGV 498 >emb|CBI36131.3| unnamed protein product [Vitis vinifera] Length = 550 Score = 221 bits (562), Expect = 6e-56 Identities = 110/137 (80%), Positives = 118/137 (86%) Frame = +1 Query: 1 LALFEDMVKEGYPPDHITFVGVLSACSHGGLMEKGSKFFESMTSDYLIRPTVQHYTCMVD 180 L LFE+M + PDHITFVGVLSACSHGGL+E+G FFE+M DY I PTVQHYTCMVD Sbjct: 265 LDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVD 323 Query: 181 LLGHSGRLDEAYDLIMNMPVRPDSGVWGALLNSCKLHGNVELGEEALLRLIDLEPRDAGN 360 LLGHSGRLDEAY+LIM M V PDSGVWGALLNSCK+H NVELGE AL RLI+LEP DAGN Sbjct: 324 LLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGN 383 Query: 361 YVILSNIYAQAGKWEGV 411 YVILSNIYAQAGKWEGV Sbjct: 384 YVILSNIYAQAGKWEGV 400 >ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus] gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus] Length = 574 Score = 202 bits (515), Expect = 2e-50 Identities = 97/137 (70%), Positives = 114/137 (83%) Frame = +1 Query: 1 LALFEDMVKEGYPPDHITFVGVLSACSHGGLMEKGSKFFESMTSDYLIRPTVQHYTCMVD 180 L LF++M K PDHITFVGVL+ACSHGGL+ +G F SM SD+ I PTVQHYTCM+D Sbjct: 289 LDLFKEM-KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMID 347 Query: 181 LLGHSGRLDEAYDLIMNMPVRPDSGVWGALLNSCKLHGNVELGEEALLRLIDLEPRDAGN 360 LLGH GRL+EAY LIM M V PD+GVWGALL+SCK+HGNVE+GE AL +L++LEP D GN Sbjct: 348 LLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGN 407 Query: 361 YVILSNIYAQAGKWEGV 411 YVILSN+YAQAGKW+GV Sbjct: 408 YVILSNMYAQAGKWDGV 424 >ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula] gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 620 Score = 201 bits (511), Expect = 5e-50 Identities = 97/137 (70%), Positives = 113/137 (82%) Frame = +1 Query: 1 LALFEDMVKEGYPPDHITFVGVLSACSHGGLMEKGSKFFESMTSDYLIRPTVQHYTCMVD 180 L LF+ M KE P DHITFVGVL+ACS G L+++G + M DY I PTVQHYTCM+D Sbjct: 335 LDLFDKMRKEDRP-DHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMID 393 Query: 181 LLGHSGRLDEAYDLIMNMPVRPDSGVWGALLNSCKLHGNVELGEEALLRLIDLEPRDAGN 360 LLGH G+LDEAYDLI NM V+PDSGVWGALLNSCK+HGNVEL E AL +LI+LEP D+GN Sbjct: 394 LLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGN 453 Query: 361 YVILSNIYAQAGKWEGV 411 YVIL+N+YAQ+GKWEGV Sbjct: 454 YVILANMYAQSGKWEGV 470 >ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330-like [Glycine max] Length = 631 Score = 195 bits (496), Expect = 3e-48 Identities = 95/137 (69%), Positives = 109/137 (79%) Frame = +1 Query: 1 LALFEDMVKEGYPPDHITFVGVLSACSHGGLMEKGSKFFESMTSDYLIRPTVQHYTCMVD 180 L LFE M+KE P DHITFVG L+ACS G L+++G + M D I PTV+HYTCMVD Sbjct: 346 LDLFERMMKEAQP-DHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVD 404 Query: 181 LLGHSGRLDEAYDLIMNMPVRPDSGVWGALLNSCKLHGNVELGEEALLRLIDLEPRDAGN 360 LLGH G+LDEAYDLI M V PDSGVWGALLNSCK HGNVEL E AL +LI+LEP D+GN Sbjct: 405 LLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGN 464 Query: 361 YVILSNIYAQAGKWEGV 411 YVIL+N+YAQ+GKWEGV Sbjct: 465 YVILANMYAQSGKWEGV 481