BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020940
         (411 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi...   221   6e-56
emb|CBI36131.3| unnamed protein product [Vitis vinifera]              221   6e-56
ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...   202   2e-50
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ...   201   5e-50
ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat...   195   3e-48

>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  221 bits (562), Expect = 6e-56
 Identities = 110/137 (80%), Positives = 118/137 (86%)
 Frame = +1

Query: 1   LALFEDMVKEGYPPDHITFVGVLSACSHGGLMEKGSKFFESMTSDYLIRPTVQHYTCMVD 180
           L LFE+M +    PDHITFVGVLSACSHGGL+E+G  FFE+M  DY I PTVQHYTCMVD
Sbjct: 363 LDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVD 421

Query: 181 LLGHSGRLDEAYDLIMNMPVRPDSGVWGALLNSCKLHGNVELGEEALLRLIDLEPRDAGN 360
           LLGHSGRLDEAY+LIM M V PDSGVWGALLNSCK+H NVELGE AL RLI+LEP DAGN
Sbjct: 422 LLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGN 481

Query: 361 YVILSNIYAQAGKWEGV 411
           YVILSNIYAQAGKWEGV
Sbjct: 482 YVILSNIYAQAGKWEGV 498


>emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  221 bits (562), Expect = 6e-56
 Identities = 110/137 (80%), Positives = 118/137 (86%)
 Frame = +1

Query: 1   LALFEDMVKEGYPPDHITFVGVLSACSHGGLMEKGSKFFESMTSDYLIRPTVQHYTCMVD 180
           L LFE+M +    PDHITFVGVLSACSHGGL+E+G  FFE+M  DY I PTVQHYTCMVD
Sbjct: 265 LDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVD 323

Query: 181 LLGHSGRLDEAYDLIMNMPVRPDSGVWGALLNSCKLHGNVELGEEALLRLIDLEPRDAGN 360
           LLGHSGRLDEAY+LIM M V PDSGVWGALLNSCK+H NVELGE AL RLI+LEP DAGN
Sbjct: 324 LLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGN 383

Query: 361 YVILSNIYAQAGKWEGV 411
           YVILSNIYAQAGKWEGV
Sbjct: 384 YVILSNIYAQAGKWEGV 400


>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449522468|ref|XP_004168248.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  202 bits (515), Expect = 2e-50
 Identities = 97/137 (70%), Positives = 114/137 (83%)
 Frame = +1

Query: 1   LALFEDMVKEGYPPDHITFVGVLSACSHGGLMEKGSKFFESMTSDYLIRPTVQHYTCMVD 180
           L LF++M K    PDHITFVGVL+ACSHGGL+ +G   F SM SD+ I PTVQHYTCM+D
Sbjct: 289 LDLFKEM-KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMID 347

Query: 181 LLGHSGRLDEAYDLIMNMPVRPDSGVWGALLNSCKLHGNVELGEEALLRLIDLEPRDAGN 360
           LLGH GRL+EAY LIM M V PD+GVWGALL+SCK+HGNVE+GE AL +L++LEP D GN
Sbjct: 348 LLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGN 407

Query: 361 YVILSNIYAQAGKWEGV 411
           YVILSN+YAQAGKW+GV
Sbjct: 408 YVILSNMYAQAGKWDGV 424


>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240430|gb|ABD32288.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355486783|gb|AES67986.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  201 bits (511), Expect = 5e-50
 Identities = 97/137 (70%), Positives = 113/137 (82%)
 Frame = +1

Query: 1   LALFEDMVKEGYPPDHITFVGVLSACSHGGLMEKGSKFFESMTSDYLIRPTVQHYTCMVD 180
           L LF+ M KE  P DHITFVGVL+ACS G L+++G   +  M  DY I PTVQHYTCM+D
Sbjct: 335 LDLFDKMRKEDRP-DHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMID 393

Query: 181 LLGHSGRLDEAYDLIMNMPVRPDSGVWGALLNSCKLHGNVELGEEALLRLIDLEPRDAGN 360
           LLGH G+LDEAYDLI NM V+PDSGVWGALLNSCK+HGNVEL E AL +LI+LEP D+GN
Sbjct: 394 LLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGN 453

Query: 361 YVILSNIYAQAGKWEGV 411
           YVIL+N+YAQ+GKWEGV
Sbjct: 454 YVILANMYAQSGKWEGV 470


>ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  195 bits (496), Expect = 3e-48
 Identities = 95/137 (69%), Positives = 109/137 (79%)
 Frame = +1

Query: 1   LALFEDMVKEGYPPDHITFVGVLSACSHGGLMEKGSKFFESMTSDYLIRPTVQHYTCMVD 180
           L LFE M+KE  P DHITFVG L+ACS G L+++G   +  M  D  I PTV+HYTCMVD
Sbjct: 346 LDLFERMMKEAQP-DHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVD 404

Query: 181 LLGHSGRLDEAYDLIMNMPVRPDSGVWGALLNSCKLHGNVELGEEALLRLIDLEPRDAGN 360
           LLGH G+LDEAYDLI  M V PDSGVWGALLNSCK HGNVEL E AL +LI+LEP D+GN
Sbjct: 405 LLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGN 464

Query: 361 YVILSNIYAQAGKWEGV 411
           YVIL+N+YAQ+GKWEGV
Sbjct: 465 YVILANMYAQSGKWEGV 481