BLASTX nr result
ID: Coptis24_contig00020895
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00020895 (241 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ... 131 5e-29 ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago t... 122 3e-26 ref|XP_003523387.1| PREDICTED: RNA polymerase sigma factor rpoD-... 115 3e-24 dbj|BAM05478.1| sigma-like factor 5B [Glycine max] 114 6e-24 ref|XP_003526693.1| PREDICTED: RNA polymerase sigma factor rpoD-... 114 6e-24 >ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera] gi|302143685|emb|CBI22546.3| unnamed protein product [Vitis vinifera] Length = 518 Score = 131 bits (330), Expect = 5e-29 Identities = 71/81 (87%), Positives = 73/81 (90%), Gaps = 1/81 (1%) Frame = -2 Query: 240 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 61 VRVEIQR KLEL+FKL R PTEEEIIEKVGISPERY EVMRASKSVLSLHARHATTQEE+ Sbjct: 366 VRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEY 425 Query: 60 INGITDDGGVGGDR-RQPALL 1 INGITD GVGGDR RQ ALL Sbjct: 426 INGITDVEGVGGDRGRQLALL 446 >ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago truncatula] gi|355491246|gb|AES72449.1| RNA polymerase sigma factor rpoD [Medicago truncatula] Length = 514 Score = 122 bits (306), Expect = 3e-26 Identities = 61/81 (75%), Positives = 70/81 (86%), Gaps = 1/81 (1%) Frame = -2 Query: 240 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 61 VR EI+R K+EL F+L R PTEEEIIEKV +SPERYR+VM+ASK +LSLH+RH TTQEEF Sbjct: 362 VRAEIRRAKIELSFQLQRSPTEEEIIEKVHVSPERYRDVMKASKPLLSLHSRHLTTQEEF 421 Query: 60 INGITDDGGVGGD-RRQPALL 1 ING+ DDGGV GD RRQPALL Sbjct: 422 INGVVDDGGVDGDNRRQPALL 442 >ref|XP_003523387.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max] Length = 509 Score = 115 bits (289), Expect = 3e-24 Identities = 58/81 (71%), Positives = 68/81 (83%), Gaps = 1/81 (1%) Frame = -2 Query: 240 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 61 VR EIQ+ K EL FKL R PTEEEIIE+V ISPERY ++++ASKS+LSL++RH TTQEEF Sbjct: 357 VRAEIQKAKTELTFKLQRSPTEEEIIERVHISPERYHDIIKASKSILSLNSRHTTTQEEF 416 Query: 60 INGITDDGGVGGD-RRQPALL 1 INGI DD GV GD R+QPALL Sbjct: 417 INGIVDDDGVNGDNRKQPALL 437 >dbj|BAM05478.1| sigma-like factor 5B [Glycine max] Length = 507 Score = 114 bits (286), Expect = 6e-24 Identities = 58/81 (71%), Positives = 68/81 (83%), Gaps = 1/81 (1%) Frame = -2 Query: 240 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 61 VR EIQ+ K EL F+L R PTEEEIIE+V ISPERY +V++ASKS+LSL++RH TTQEEF Sbjct: 355 VRAEIQKAKTELTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLNSRHTTTQEEF 414 Query: 60 INGITDDGGVGGD-RRQPALL 1 INGI DD GV GD R+QPALL Sbjct: 415 INGIVDDDGVNGDNRKQPALL 435 >ref|XP_003526693.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max] Length = 507 Score = 114 bits (286), Expect = 6e-24 Identities = 58/81 (71%), Positives = 68/81 (83%), Gaps = 1/81 (1%) Frame = -2 Query: 240 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 61 VR EIQ+ K EL F+L R PTEEEIIE+V ISPERY +V++ASKS+LSL++RH TTQEEF Sbjct: 355 VRAEIQKAKTELTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLNSRHTTTQEEF 414 Query: 60 INGITDDGGVGGD-RRQPALL 1 INGI DD GV GD R+QPALL Sbjct: 415 INGIVDDDGVNGDNRKQPALL 435