BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020895
         (241 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   131   5e-29
ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago t...   122   3e-26
ref|XP_003523387.1| PREDICTED: RNA polymerase sigma factor rpoD-...   115   3e-24
dbj|BAM05478.1| sigma-like factor 5B [Glycine max]                    114   6e-24
ref|XP_003526693.1| PREDICTED: RNA polymerase sigma factor rpoD-...   114   6e-24

>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|302143685|emb|CBI22546.3| unnamed protein product
           [Vitis vinifera]
          Length = 518

 Score =  131 bits (330), Expect = 5e-29
 Identities = 71/81 (87%), Positives = 73/81 (90%), Gaps = 1/81 (1%)
 Frame = -2

Query: 240 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 61
           VRVEIQR KLEL+FKL R PTEEEIIEKVGISPERY EVMRASKSVLSLHARHATTQEE+
Sbjct: 366 VRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEY 425

Query: 60  INGITDDGGVGGDR-RQPALL 1
           INGITD  GVGGDR RQ ALL
Sbjct: 426 INGITDVEGVGGDRGRQLALL 446


>ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
           gi|355491246|gb|AES72449.1| RNA polymerase sigma factor
           rpoD [Medicago truncatula]
          Length = 514

 Score =  122 bits (306), Expect = 3e-26
 Identities = 61/81 (75%), Positives = 70/81 (86%), Gaps = 1/81 (1%)
 Frame = -2

Query: 240 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 61
           VR EI+R K+EL F+L R PTEEEIIEKV +SPERYR+VM+ASK +LSLH+RH TTQEEF
Sbjct: 362 VRAEIRRAKIELSFQLQRSPTEEEIIEKVHVSPERYRDVMKASKPLLSLHSRHLTTQEEF 421

Query: 60  INGITDDGGVGGD-RRQPALL 1
           ING+ DDGGV GD RRQPALL
Sbjct: 422 INGVVDDGGVDGDNRRQPALL 442


>ref|XP_003523387.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 509

 Score =  115 bits (289), Expect = 3e-24
 Identities = 58/81 (71%), Positives = 68/81 (83%), Gaps = 1/81 (1%)
 Frame = -2

Query: 240 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 61
           VR EIQ+ K EL FKL R PTEEEIIE+V ISPERY ++++ASKS+LSL++RH TTQEEF
Sbjct: 357 VRAEIQKAKTELTFKLQRSPTEEEIIERVHISPERYHDIIKASKSILSLNSRHTTTQEEF 416

Query: 60  INGITDDGGVGGD-RRQPALL 1
           INGI DD GV GD R+QPALL
Sbjct: 417 INGIVDDDGVNGDNRKQPALL 437


>dbj|BAM05478.1| sigma-like factor 5B [Glycine max]
          Length = 507

 Score =  114 bits (286), Expect = 6e-24
 Identities = 58/81 (71%), Positives = 68/81 (83%), Gaps = 1/81 (1%)
 Frame = -2

Query: 240 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 61
           VR EIQ+ K EL F+L R PTEEEIIE+V ISPERY +V++ASKS+LSL++RH TTQEEF
Sbjct: 355 VRAEIQKAKTELTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLNSRHTTTQEEF 414

Query: 60  INGITDDGGVGGD-RRQPALL 1
           INGI DD GV GD R+QPALL
Sbjct: 415 INGIVDDDGVNGDNRKQPALL 435


>ref|XP_003526693.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 507

 Score =  114 bits (286), Expect = 6e-24
 Identities = 58/81 (71%), Positives = 68/81 (83%), Gaps = 1/81 (1%)
 Frame = -2

Query: 240 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 61
           VR EIQ+ K EL F+L R PTEEEIIE+V ISPERY +V++ASKS+LSL++RH TTQEEF
Sbjct: 355 VRAEIQKAKTELTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLNSRHTTTQEEF 414

Query: 60  INGITDDGGVGGD-RRQPALL 1
           INGI DD GV GD R+QPALL
Sbjct: 415 INGIVDDDGVNGDNRKQPALL 435