BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020888
         (1351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   101   2e-29
gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japo...   112   2e-29
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   101   3e-29
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   118   4e-29
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   100   5e-29

>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  101 bits (251), Expect(2) = 2e-29
 Identities = 49/163 (30%), Positives = 89/163 (54%), Gaps = 1/163 (0%)
 Frame = +1

Query: 172  YLGVLSLLGRASQDTFAPLVERFQSRLAGWKAATLSKGGRLTLVQFVLSALPTYIMSCTL 351
            YLG+   +GR+    F+ L ER   R+ GWK   LS+ G+  L++ V  A+PT+ M C  
Sbjct: 1006 YLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFE 1065

Query: 352  LPAGVLEKLERIRRNFLWRHDNRQHKMHYFNWQLACTSKRYGGLGIPNLQIQTFALLAKQ 531
            L   + +++ ++   + W +  + +KMH+ +W      K  GGLG  ++ I   A+LAKQ
Sbjct: 1066 LTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQ 1125

Query: 532  AWTLL-EPRTLWACQMQSKYFHSSKFLQTRLPTSSSKVWKHME 657
             W L+ +P +L +  +++KYF      + +  ++ S  W+ ++
Sbjct: 1126 GWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQ 1168



 Score = 55.8 bits (133), Expect(2) = 2e-29
 Identities = 51/193 (26%), Positives = 73/193 (37%), Gaps = 35/193 (18%)
 Frame = +3

Query: 684  GIKWKVGDGLSINAWVDNWIPYIPTEGHPPFCPDGCDLI--VDTCCRFY--*WDSQKLCE 851
            G+ W+VGDG  IN W D WIP        P  P G +L+  V+     Y   WD   L +
Sbjct: 1177 GMIWRVGDGSKINIWADPWIP--RGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQ 1234

Query: 852  FWPAHYVLQILSIPFRFIVQDDKTDMGLS*ISGIHGKICL*FVMGWHF---------SSP 1004
             +    V  I SIP    ++D                     V+ WHF         S+ 
Sbjct: 1235 TFWEEDVAAIKSIPVHVEMED---------------------VLAWHFDARGCFTVKSAY 1273

Query: 1005 KIEQPLV----------------------VKIWKSKLPFKIRFFFLWQCYHGLIPAASFL 1118
            K+++ +                        K+WK  +P KI+  FLW+  H  +   + L
Sbjct: 1274 KVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIK-HFLWRMCHNTLALRANL 1332

Query: 1119 AHRGFRVNNSCTM 1157
             HRG  V+  C M
Sbjct: 1333 HHRGMDVDTRCVM 1345


>gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japonica Group]
          Length = 615

 Score =  112 bits (279), Expect(2) = 2e-29
 Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
 Frame = +1

Query: 145 IQLTHKFPNYLGVLSLLGRASQDTFAPLVERFQSRLAGWKAATLSKGGRLTLVQFVLSAL 324
           IQ   +   YLG+   +GR+   TF+ L +R   RL GWK   LSK G+  L++ V+ ++
Sbjct: 197 IQSEARNEKYLGLPIYMGRSRSQTFSYLKDRVWKRLQGWKERLLSKAGKEILIKSVVQSI 256

Query: 325 PTYIMSCTLLPAGVLEKLERIRRNFLWRHDNRQHKMHYFNWQLACTSKRYGGLGIPNLQI 504
           PTY MSC  L   +  +L  +   F W     ++K+H+ +W+L C  K  GG+G  +L +
Sbjct: 257 PTYAMSCFDLTKTLCNELGSLVCRFWWAQQENENKVHWVSWELLCRRKEQGGIGYRDLHL 316

Query: 505 QTFALLAKQAWTL-LEPRTLWACQMQSKYFHSSKFLQTRLPTSSSKVWK 648
              A+LA+Q W L +EP +L A  +++KYF +   +  R     S  W+
Sbjct: 317 FNLAMLARQGWRLIMEPMSLCAQVLRAKYFPTGDLMAVREKPGISYSWR 365



 Score = 45.1 bits (105), Expect(2) = 2e-29
 Identities = 47/195 (24%), Positives = 71/195 (36%), Gaps = 39/195 (20%)
 Frame = +3

Query: 684  GIKWKVGDGLSINAWVDNWIPYIPTEGHPPFCPDG-------CDLIVDTCCRFY*WDSQK 842
            G+ W+VGDG +I+ W D W+P   T    P  P G        DLI  T  +   WD + 
Sbjct: 377  GLIWRVGDGTNIDIWHDPWLPSGIT--RRPITPRGRTVVNKVTDLIDPTIGK---WDKEL 431

Query: 843  LCEFWPAHYVLQILSIPFRFIVQDDKTDMGLS*ISGIHGKICL*FVMGWHFSS------- 1001
            +   +    V QIL+IP R  V+D                      + WHF +       
Sbjct: 432  IEGLFWEEDVKQILTIPIRAGVEDG---------------------LAWHFDNRGIFSVK 470

Query: 1002 --------------PK-----------IEQPLVVKIWKSKLPFKIRFFFLWQCYHGLIPA 1106
                          PK           +E+    +IWK     K++  F+W   H  +P 
Sbjct: 471  SAYHVLEDERRRHKPKQDGASSSGQTNMEKLCWQQIWKLPYLPKVK-HFIWHLAHNSLPF 529

Query: 1107 ASFLAHRGFRVNNSC 1151
               +  RG +++  C
Sbjct: 530  RMSIQKRGMQIDTRC 544


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  101 bits (251), Expect(2) = 3e-29
 Identities = 49/163 (30%), Positives = 89/163 (54%), Gaps = 1/163 (0%)
 Frame = +1

Query: 172  YLGVLSLLGRASQDTFAPLVERFQSRLAGWKAATLSKGGRLTLVQFVLSALPTYIMSCTL 351
            YLG+   +GR+    F+ L ER   R+ GWK   LS+ G+  L++ V  A+PT+ M C  
Sbjct: 979  YLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFE 1038

Query: 352  LPAGVLEKLERIRRNFLWRHDNRQHKMHYFNWQLACTSKRYGGLGIPNLQIQTFALLAKQ 531
            L   + +++ ++   + W +  + +KMH+ +W      K  GGLG  ++ I   A+LAKQ
Sbjct: 1039 LTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQ 1098

Query: 532  AWTLL-EPRTLWACQMQSKYFHSSKFLQTRLPTSSSKVWKHME 657
             W L+ +P +L +  +++KYF      + +  ++ S  W+ ++
Sbjct: 1099 GWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQ 1141



 Score = 55.1 bits (131), Expect(2) = 3e-29
 Identities = 50/193 (25%), Positives = 73/193 (37%), Gaps = 35/193 (18%)
 Frame = +3

Query: 684  GIKWKVGDGLSINAWVDNWIPYIPTEGHPPFCPDGCDLI--VDTCCRFY--*WDSQKLCE 851
            G+ W++GDG  IN W D WIP        P  P G +L+  V+     Y   WD   L +
Sbjct: 1150 GMIWRMGDGSKINIWADPWIP--RGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQ 1207

Query: 852  FWPAHYVLQILSIPFRFIVQDDKTDMGLS*ISGIHGKICL*FVMGWHF---------SSP 1004
             +    V  I SIP    ++D                     V+ WHF         S+ 
Sbjct: 1208 TFWEEDVAAIKSIPVHVEMED---------------------VLAWHFDARGCFTVKSAY 1246

Query: 1005 KIEQPLV----------------------VKIWKSKLPFKIRFFFLWQCYHGLIPAASFL 1118
            K+++ +                        K+WK  +P KI+  FLW+  H  +   + L
Sbjct: 1247 KVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIK-HFLWRMCHNTLALRANL 1305

Query: 1119 AHRGFRVNNSCTM 1157
             HRG  V+  C M
Sbjct: 1306 QHRGMDVDTRCVM 1318


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  118 bits (295), Expect(2) = 4e-29
 Identities = 60/160 (37%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
 Frame = +1

Query: 172  YLGVLSLLGRASQDTFAPLVERFQSRLAGWKAATLSKGGRLTLVQFVLSALPTYIMSCTL 351
            YLG+ +++GR+ + TFA + ER   +L GWK   LS+ G+  L++ V  A+PTY+MS   
Sbjct: 753  YLGLPTIIGRSKKVTFACIKERIWKKLQGWKEKLLSRPGKEVLIKSVAQAIPTYMMSVFS 812

Query: 352  LPAGVLEKLERIRRNFLWRHDNRQHKMHYFNWQLACTSKRYGGLGIPNLQIQTFALLAKQ 531
            LP+G+++++  +   F W   +   KMH+ +W   C  K  GGLG  +L     +LLAKQ
Sbjct: 813  LPSGLIDEIHSLLARFWWGSSDTNRKMHWHSWDTLCYPKSMGGLGFRDLHCFNQSLLAKQ 872

Query: 532  AWTLLE-PRTLWACQMQSKYFHSSKFLQTRLPTSSSKVWK 648
            AW L    +TL    +Q++YF SS+ L+ R   + S  W+
Sbjct: 873  AWRLCTGDQTLLYRLLQARYFKSSELLEARRGYNPSFTWR 912



 Score = 37.7 bits (86), Expect(2) = 4e-29
 Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 14/172 (8%)
 Frame = +3

Query: 684  GIKWKVGDGLSINAWVDNWI-----PYIPTEGHPPFCPDGCDL----IVDTCCRFY*WDS 836
            G+KW VG G  I  W D WI       +PT    P      DL    ++D       W+ 
Sbjct: 924  GLKWCVGSGERIRVWEDAWILGEGAHMVPT----PQADSNLDLKVCDLIDVARGA--WNI 977

Query: 837  QKLCEFWPAHYVLQILSIPFRFIVQDD-----KTDMGLS*ISGIHGKICL*FVMGWHFSS 1001
            + + + +       +LSIP    + DD      +  G+  +   +    L  V  W    
Sbjct: 978  ESVQQTFVEEEWELVLSIPLSRFLPDDHRYWWPSRNGIFSVRSCYWLGRLGPVRTWQLQH 1037

Query: 1002 PKIEQPLVVKIWKSKLPFKIRFFFLWQCYHGLIPAASFLAHRGFRVNNSCTM 1157
             + E  L  ++W+ + P K+   FLW+   G +     L  R   V+ +C++
Sbjct: 1038 GERETELWRRVWQLQGPPKLS-HFLWRACKGSLAVKGRLFSRHISVDATCSV 1088


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score = 99.8 bits (247), Expect(2) = 5e-29
 Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 1/163 (0%)
 Frame = +1

Query: 172  YLGVLSLLGRASQDTFAPLVERFQSRLAGWKAATLSKGGRLTLVQFVLSALPTYIMSCTL 351
            YLG+   +GR+    F+ L ER   R+ GWK   LS+ G+  L++ V   +PT+ M C  
Sbjct: 951  YLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFE 1010

Query: 352  LPAGVLEKLERIRRNFLWRHDNRQHKMHYFNWQLACTSKRYGGLGIPNLQIQTFALLAKQ 531
            L   + +++ ++   + W +  + +KMH+ +W      K  GGLG  ++ I   A+LAKQ
Sbjct: 1011 LTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQ 1070

Query: 532  AWTLL-EPRTLWACQMQSKYFHSSKFLQTRLPTSSSKVWKHME 657
             W L+ +P +L +  +++KYF      + +  ++ S  W+ ++
Sbjct: 1071 GWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQ 1113



 Score = 55.8 bits (133), Expect(2) = 5e-29
 Identities = 51/193 (26%), Positives = 73/193 (37%), Gaps = 35/193 (18%)
 Frame = +3

Query: 684  GIKWKVGDGLSINAWVDNWIPYIPTEGHPPFCPDGCDLI--VDTCCRFY--*WDSQKLCE 851
            G+ W+VGDG  IN W D WIP        P  P G +L+  V+     Y   WD   L +
Sbjct: 1122 GMIWRVGDGSKINIWADPWIP--RGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQ 1179

Query: 852  FWPAHYVLQILSIPFRFIVQDDKTDMGLS*ISGIHGKICL*FVMGWHF---------SSP 1004
             +    V  I SIP    ++D                     V+ WHF         S+ 
Sbjct: 1180 TFWEEDVAAIKSIPVHVEMED---------------------VLAWHFDARGCFTVKSAY 1218

Query: 1005 KIEQPLV----------------------VKIWKSKLPFKIRFFFLWQCYHGLIPAASFL 1118
            K+++ +                        K+WK  +P KI+  FLW+  H  +   + L
Sbjct: 1219 KVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIK-HFLWRMCHNTLALRANL 1277

Query: 1119 AHRGFRVNNSCTM 1157
             HRG  V+  C M
Sbjct: 1278 HHRGMDVDTRCVM 1290