BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020880
         (448 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [S...   167   6e-40
gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]        164   9e-39
ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containi...   162   2e-38
ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containi...   159   2e-37
emb|CBI31119.3| unnamed protein product [Vitis vinifera]              159   2e-37

>ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
           gi|241932087|gb|EES05232.1| hypothetical protein
           SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  167 bits (424), Expect = 6e-40
 Identities = 83/150 (55%), Positives = 109/150 (72%), Gaps = 3/150 (2%)
 Frame = +2

Query: 8   IVRNSIMKMYCNMGCLIEARLLFD--GSLNLDLISWNSMISAYGKSGQVELGRELFERMP 181
           +V N ++K+YC +G L +AR +FD  G+  LD++SWN+M+S YGK G +E  RE+F RMP
Sbjct: 117 VVTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAAREVFVRMP 176

Query: 182 MRSLVSWGAMIDGYVVSGGFSEALSLFDDMQVSGLKPDAMTLVSVLKASCNLGALDKGKW 361
            R LVSW AMID  V +G FSEAL +FD M  +G KPDA+ LVSVLK   +LGAL++G+W
Sbjct: 177 ERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHLGALERGRW 236

Query: 362 VHRYVDENKLGWEK-NVVLGTALVDMYAKC 448
           VHR++   +LG    NV+L TALVDMY KC
Sbjct: 237 VHRFLKAERLGGRPGNVMLETALVDMYCKC 266



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
 Frame = +2

Query: 2   NVIVRNSIMKMYCNMGCLIEARLLFDGSLNLDLISWNSMISAYGKSGQVELGRELFERMP 181
           NV++  +++ MYC  GC+ EA  +FDG  + D++ WN+MI     +G  +   ELF RM 
Sbjct: 252 NVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRML 311

Query: 182 MRSLV----SWGAMIDGYVVSGGFSEALSLFDDMQVSGLKP 292
            +  V    ++   +   + +G   E   +F  M+  G++P
Sbjct: 312 DKGFVPNESTFVVALCACIHTGRVDEGEDVFRSMRDHGIEP 352


>gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  164 bits (414), Expect = 9e-39
 Identities = 81/150 (54%), Positives = 107/150 (71%), Gaps = 3/150 (2%)
 Frame = +2

Query: 8   IVRNSIMKMYCNMGCLIEARLLFD--GSLNLDLISWNSMISAYGKSGQVELGRELFERMP 181
           +V N ++K+YC +G L +AR +FD  G+ +LD  SWN+M+S YGK G +E  RE+F RMP
Sbjct: 152 VVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMP 211

Query: 182 MRSLVSWGAMIDGYVVSGGFSEALSLFDDMQVSGLKPDAMTLVSVLKASCNLGALDKGKW 361
            R LVSW AMID  + +G FSEAL +FD M  +G +PDA+ L SVLKA  +LGAL++G+W
Sbjct: 212 ERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRW 271

Query: 362 VHRYVDENKLGWE-KNVVLGTALVDMYAKC 448
           VHR++    LG    NV+L TALVDMY KC
Sbjct: 272 VHRFLKAEGLGRSPDNVMLETALVDMYCKC 301


>ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 454

 Score =  162 bits (411), Expect = 2e-38
 Identities = 78/148 (52%), Positives = 105/148 (70%), Gaps = 1/148 (0%)
 Frame = +2

Query: 8   IVRNSIMKMYCNMGCLIEARLLFDGSLNLDLISWNSMISAYGKSGQVELGRELFERMPMR 187
           +V NS++K+YC +G L  AR +FD    LD+ SWN+M+S YGKSG +   RE+F RMP R
Sbjct: 112 VVTNSLLKLYCTLGLLPHARRVFDSGAALDVASWNTMVSGYGKSGDLAAAREVFGRMPGR 171

Query: 188 SLVSWGAMIDGYVVSGGFSEALSLFDDMQVSGLKPDAMTLVSVLKASCNLGALDKGKWVH 367
           +LVSW AMID  V +  F EALS+FD M   G KPD + LVS+LKA  +LGA+ +G+W H
Sbjct: 172 NLVSWSAMIDALVHAEEFGEALSVFDQMMREGFKPDVVVLVSMLKACAHLGAVKRGRWAH 231

Query: 368 RYVD-ENKLGWEKNVVLGTALVDMYAKC 448
           +Y++ E   G ++NV++ TALVDMY KC
Sbjct: 232 QYLETEGFAGRQRNVMVETALVDMYCKC 259



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
 Frame = +2

Query: 2   NVIVRNSIMKMYCNMGCLIEARLLFDGSLNLDLISWNSMISAYGKSGQVELGRELFERMP 181
           NV+V  +++ MYC  GC+ EA  +FDG    D++ WNSMI     +G  +   ELF+RM 
Sbjct: 245 NVMVETALVDMYCKCGCMEEAWCVFDGVRYRDVVLWNSMIGGLAMNGHGDRALELFQRML 304

Query: 182 MRSLV----SWGAMIDGYVVSGGFSEALSLFDDMQVSGLKP 292
               V    ++   +     +G   E   +F  M   G++P
Sbjct: 305 QEGFVPNQSTFAGALCACTHTGHVDEGREIFKSMWHHGIEP 345


>ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  159 bits (402), Expect = 2e-37
 Identities = 72/146 (49%), Positives = 105/146 (71%)
 Frame = +2

Query: 11  VRNSIMKMYCNMGCLIEARLLFDGSLNLDLISWNSMISAYGKSGQVELGRELFERMPMRS 190
           V+N ++ +Y +  C+  AR LFDGS+N D+++W ++I+ Y KSGQV + R+LF+ MP ++
Sbjct: 150 VQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKN 209

Query: 191 LVSWGAMIDGYVVSGGFSEALSLFDDMQVSGLKPDAMTLVSVLKASCNLGALDKGKWVHR 370
            VSW AMI GY   G F EAL LF+DMQ++G +P+   +V  L A   LGALD+G+W+H 
Sbjct: 210 AVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHA 269

Query: 371 YVDENKLGWEKNVVLGTALVDMYAKC 448
           YVD N++  ++  +LGTAL+DMYAKC
Sbjct: 270 YVDRNRMVLDR--ILGTALIDMYAKC 293


>emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  159 bits (402), Expect = 2e-37
 Identities = 72/146 (49%), Positives = 105/146 (71%)
 Frame = +2

Query: 11  VRNSIMKMYCNMGCLIEARLLFDGSLNLDLISWNSMISAYGKSGQVELGRELFERMPMRS 190
           V+N ++ +Y +  C+  AR LFDGS+N D+++W ++I+ Y KSGQV + R+LF+ MP ++
Sbjct: 125 VQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKN 184

Query: 191 LVSWGAMIDGYVVSGGFSEALSLFDDMQVSGLKPDAMTLVSVLKASCNLGALDKGKWVHR 370
            VSW AMI GY   G F EAL LF+DMQ++G +P+   +V  L A   LGALD+G+W+H 
Sbjct: 185 AVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHA 244

Query: 371 YVDENKLGWEKNVVLGTALVDMYAKC 448
           YVD N++  ++  +LGTAL+DMYAKC
Sbjct: 245 YVDRNRMVLDR--ILGTALIDMYAKC 268