BLASTX nr result
ID: Coptis24_contig00020879
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00020879
(705 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003637494.1| F-box protein [Medicago truncatula] gi|35550... 50 2e-12
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ... 55 2e-12
ref|XP_003594188.1| F-box protein [Medicago truncatula] gi|87162... 51 3e-12
ref|XP_003546182.1| PREDICTED: F-box protein CPR30-like [Glycine... 51 7e-12
ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|2... 58 7e-12
>ref|XP_003637494.1| F-box protein [Medicago truncatula] gi|355503429|gb|AES84632.1|
F-box protein [Medicago truncatula]
Length = 381
Score = 49.7 bits (117), Expect(2) = 2e-12
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Frame = -3
Query: 697 VCVNETLNWLATEDFEGDSILQLVSFNFVEEKFREVPYPTCLTCIDD------VAVLGGQ 536
V V +L+W+ TE + +V+FN E F EVP+P ++ VAVL G
Sbjct: 200 VFVENSLHWIMTEKLDPLKPRVIVAFNLTHEIFNEVPFPEIGEEVNSESFEIGVAVLEGC 259
Query: 535 LCLVNHISSSRVDVWVLDDEGLR 467
LC+ + + ++DVW++ + G R
Sbjct: 260 LCMTVNYQTVKIDVWLMKEYGCR 282
Score = 48.5 bits (114), Expect(2) = 2e-12
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Frame = -1
Query: 486 WMTKDYGVKDSWTCLFSIPLLEEFKHYGIVCMNILCFCNFGN-VLVQARNRKLCFYDPKL 310
W+ K+YG +DSW LF+ L E + + +L + + G VL+Q KL +YD K
Sbjct: 274 WLMKEYGCRDSWCKLFT--LAESCFTLPLKALRLLAYSSDGGMVLLQVDPEKLFWYDLKS 331
Query: 309 EEVEVLQIRGIPEVFTSEIYVGSPISLKSGTFVE*KQAKRMEHDAIKVGDEVKL 148
E+V +Q GIP + I VGS +S S E + +KR + D + G ++KL
Sbjct: 332 EQVSCVQ--GIPNFDQAMICVGSLVS-PSFPRKENRTSKRRD-DFLSRGFKLKL 381
>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 389
Score = 55.5 bits (132), Expect(2) = 2e-12
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Frame = -1
Query: 486 WMTKDYGVKDSWTCLFSIPLLEEFKHYGIV-CMNILCFCNFGN-VLVQARNRKLCFYDPK 313
W+ ++Y VK+SW+ LFS+ LE GI+ + L + GN VL++ N L +YD K
Sbjct: 271 WVMEEYMVKESWSKLFSVARLEVI---GILRSLKPLAYSKSGNEVLIEHDNVNLFWYDLK 327
Query: 312 LEEVEVLQIRGIPEVFTSEIYVGSPISLKSGTFVE*KQAKRMEHDAIK 169
+EV + I+G+P F +EI VGS + L + ++ + EH K
Sbjct: 328 RKEVVNVWIQGVPITFEAEICVGSLVPLNANRL---RRRPKHEHKETK 372
Score = 42.4 bits (98), Expect(2) = 2e-12
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = -3
Query: 697 VCVNETLNWLATEDFEGDSILQLVSFNFVEEKFREVPYPTC--LTCIDDVAVLGGQLCLV 524
+ N L+WL ++D + +V+ + E + VP P + C V VL G L L+
Sbjct: 201 IYANGALHWLVSQDPDSTVADTIVALDLGVEDYHVVPKPEFVDMNCNMGVGVLQGCLSLL 260
Query: 523 NHISSSRVDVWVLDD 479
+ S RVDVWV+++
Sbjct: 261 AYARSERVDVWVMEE 275
>ref|XP_003594188.1| F-box protein [Medicago truncatula] gi|87162697|gb|ABD28492.1|
Cyclin-like F-box; F-box protein interaction domain;
Galactose oxidase, central [Medicago truncatula]
gi|355483236|gb|AES64439.1| F-box protein [Medicago
truncatula]
Length = 424
Score = 50.8 bits (120), Expect(2) = 3e-12
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Frame = -3
Query: 697 VCVNETLNWLATEDFEGDSILQLVSFNFVEEKFREVPYPTCLTCID-----------DVA 551
V V +L+W+ + +G +V+FN E F EVP P L + VA
Sbjct: 226 VFVQNSLHWVMAKKLDGSYPWLIVAFNLTLEIFNEVPLPVELEGEEVNSNSNGSFKIRVA 285
Query: 550 VLGGQLCLVNHISSSRVDVWVLDDEGLR 467
VLGG LC+ + ++++DVWV+ D G R
Sbjct: 286 VLGGCLCMSVNYEATKIDVWVMKDYGSR 313
Score = 46.6 bits (109), Expect(2) = 3e-12
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Frame = -1
Query: 486 WMTKDYGVKDSWTCLFSIPLLEEFKHYGIVCMNILCFCNFGNVLVQARN-------RKLC 328
W+ KDYG +DSW LF+ L++ + + + LC+ + G ++ N RKL
Sbjct: 305 WVMKDYGSRDSWCKLFT--LVKSCFNSPLDFLRPLCYSSDGGKVLLEANPNLDKTLRKLF 362
Query: 327 FYDPKLEEVEVLQIRGIPEVFTSEIYVGSPIS 232
+YD K E+V + GIP + YVGS +S
Sbjct: 363 WYDLKSEQVS--YVEGIPNFDEAMFYVGSLVS 392
>ref|XP_003546182.1| PREDICTED: F-box protein CPR30-like [Glycine max]
Length = 394
Score = 51.2 bits (121), Expect(2) = 7e-12
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = -3
Query: 697 VCVNETLNWLATEDFEGDSILQLVSFNFVEEKFREVPYPTCLTCID-----DVAVLGGQL 533
V V +L+W+ T E D +++F+ + FRE+P P +D D+A+LGG L
Sbjct: 203 VFVGNSLHWVVTRKLEPDQPDLIIAFDLTHDIFRELPLPDT-GGVDGGFEIDLALLGGSL 261
Query: 532 CLVNHISSSRVDVWVLDDEGLR 467
C+ + +R+DVWV+ + R
Sbjct: 262 CMTVNFHKTRIDVWVMREYNRR 283
Score = 45.1 bits (105), Expect(2) = 7e-12
Identities = 23/83 (27%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = -1
Query: 486 WMTKDYGVKDSWTCLFSIPLLEEFKHYGIVCMNILCFCNFGN-VLVQARNRKLCFYDPKL 310
W+ ++Y +DSW +F++ E + + C+ L + + GN VL++ ++L +YD +
Sbjct: 275 WVMREYNRRDSWCKVFTLEESREMR--SLKCVRPLGYSSDGNKVLLEHDRKRLFWYDLEK 332
Query: 309 EEVEVLQIRGIPEVFTSEIYVGS 241
+EV +++I+G+P + + I +G+
Sbjct: 333 KEVALVKIQGLPNLNEAMICLGT 355
>ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1|
predicted protein [Populus trichocarpa]
Length = 408
Score = 58.2 bits (139), Expect(2) = 7e-12
Identities = 28/89 (31%), Positives = 51/89 (57%)
Frame = -1
Query: 486 WMTKDYGVKDSWTCLFSIPLLEEFKHYGIVCMNILCFCNFGNVLVQARNRKLCFYDPKLE 307
W+ K+YGVK+SWT L ++ + K + + + +L++ NR +YD +
Sbjct: 288 WVMKEYGVKESWTHLCTVIAQLQVKAFWLHARPLAYSKGGDKILLELDNRFFVWYDLRRR 347
Query: 306 EVEVLQIRGIPEVFTSEIYVGSPISLKSG 220
+ ++++IRG P +F +EI VGS ++L G
Sbjct: 348 KSKIIRIRGAPPIFIAEICVGSLVTLNGG 376
Score = 38.1 bits (87), Expect(2) = 7e-12
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Frame = -3
Query: 697 VCVNETLNWLAT---EDFEGDSILQLVSFNFVEEKFREVPYPTCLTCIDD--VAVLGGQL 533
V N ++W AT + E S L +V+F+ E+F+ +P P + + V VLGG L
Sbjct: 216 VFANSAVHWKATVVGKGKENGSDL-IVAFDLGAEEFKIIPQPDYSSNEHEMNVGVLGGCL 274
Query: 532 CLVNHISSSRVDVWVLDDEGLR 467
C+ + + +V++WV+ + G++
Sbjct: 275 CVFCNKNCKQVEIWVMKEYGVK 296